Wall clock time and date at job start Wed Apr 15 2020 11:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46495 * 119.99943 * 2 1 4 4 C 1.50701 * 109.47158 * 269.99473 * 3 2 1 5 5 N 1.30504 * 126.36608 * 89.97411 * 4 3 2 6 6 N 1.28574 * 109.66827 * 179.97438 * 5 4 3 7 7 C 1.30680 * 109.63080 * 359.96416 * 6 5 4 8 8 N 1.35166 * 107.33702 * 0.13295 * 7 6 5 9 9 C 1.46796 * 111.15518 * 179.76443 * 8 7 6 10 10 C 1.54428 * 105.55615 * 17.05541 * 9 8 7 11 11 C 1.51341 * 142.71957 * 180.25430 * 7 6 5 12 12 C 1.34779 * 120.00081 * 179.97438 * 2 1 3 13 13 O 1.21273 * 120.00081 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99607 * 0.02562 * 12 2 1 15 15 C 1.53007 * 109.46785 * 179.97438 * 14 12 2 16 16 C 1.50707 * 109.46789 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00145 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99599 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99706 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47003 * 60.00200 * 20 18 16 22 22 H 1.48498 * 109.46831 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47348 * 299.99981 * 20 18 16 24 24 H 1.08996 * 109.46939 * 90.00263 * 1 2 3 25 25 H 1.08998 * 109.46833 * 210.00015 * 1 2 3 26 26 H 1.09000 * 109.46690 * 330.00429 * 1 2 3 27 27 H 1.09005 * 109.47250 * 150.00140 * 3 2 1 28 28 H 1.09000 * 109.47361 * 29.99740 * 3 2 1 29 29 H 1.09000 * 110.23399 * 136.08124 * 9 8 7 30 30 H 1.08999 * 110.22839 * 258.04069 * 9 8 7 31 31 H 1.09007 * 110.95665 * 92.51620 * 10 9 8 32 32 H 1.08994 * 110.96475 * 216.25298 * 10 9 8 33 33 H 1.09005 * 110.47310 * 44.74157 * 11 7 6 34 34 H 1.08996 * 110.58598 * 282.19272 * 11 7 6 35 35 H 1.08998 * 109.47404 * 299.99638 * 14 12 2 36 36 H 1.08998 * 109.47195 * 60.00060 * 14 12 2 37 37 H 1.08998 * 109.46878 * 299.99990 * 15 14 12 38 38 H 1.09003 * 109.46990 * 60.00523 * 15 14 12 39 39 H 0.96998 * 119.99974 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 7 1.6675 2.4521 -2.1506 6 7 2.1931 2.6234 -3.3115 7 6 3.3353 1.9916 -3.3738 8 7 3.5282 1.3893 -2.1792 9 6 4.7938 0.6457 -2.1590 10 6 5.6142 1.1922 -3.3477 11 6 4.5019 1.7005 -4.2930 12 6 2.1390 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0005 16 6 1.6261 -4.9403 -0.0001 17 1 0.5461 -4.9403 -0.0001 18 6 2.3155 -6.1344 0.0003 19 7 3.6307 -6.1344 0.0018 20 14 1.3815 -7.7521 0.0002 21 1 0.5282 -7.8309 -1.2126 22 1 2.3465 -8.8808 0.0001 23 1 0.5273 -7.8306 1.2124 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.1500 1.1384 0.5138 28 1 1.6085 2.0284 0.5138 29 1 5.3216 0.8253 -1.2224 30 1 4.6066 -0.4202 -2.2886 31 1 6.2612 2.0105 -3.0314 32 1 6.1939 0.3986 -3.8190 33 1 4.8211 2.6092 -4.8034 34 1 4.2361 0.9308 -5.0175 35 1 0.7585 -2.5298 0.8903 36 1 0.7591 -2.5302 -0.8897 37 1 3.0063 -3.5774 -0.8895 38 1 3.0063 -3.5775 0.8906 39 1 4.1157 -6.9744 0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324062971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:40 Heat of formation + Delta-G solvation = 46.762356 kcal Electronic energy + Delta-G solvation = -21790.263438 eV Core-core repulsion = 18541.539704 eV Total energy + Delta-G solvation = -3248.723734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -43.37034 -39.50936 -37.32759 -35.54022 -33.61144 -32.62025 -31.19352 -30.17267 -28.58759 -27.03894 -26.40051 -24.89638 -22.75631 -21.75282 -21.06849 -20.61978 -18.69536 -17.18671 -16.98363 -16.50658 -15.97854 -15.66781 -15.41567 -14.67766 -14.53956 -14.40011 -13.60435 -13.52739 -13.35033 -13.12611 -12.85959 -12.50830 -12.28625 -12.21005 -12.08094 -11.82147 -11.67362 -11.34380 -11.19128 -10.95887 -10.66111 -10.37584 -10.05866 -10.02457 -9.72428 -9.40603 -9.18864 -8.94218 -8.69188 -8.37885 -6.02475 -4.06794 1.72575 2.46354 2.73664 3.03074 3.30714 3.34165 3.35770 3.38851 3.63040 4.11722 4.37859 4.42245 4.46165 4.57415 4.78176 5.17591 5.20809 5.27884 5.31976 5.32916 5.33702 5.37138 5.45488 5.55238 5.61695 5.68754 5.81994 6.00655 6.13842 6.14683 6.17999 6.51423 6.78318 6.82021 7.54580 7.66374 7.76596 7.98754 8.30570 8.54675 8.73622 9.00668 9.57168 11.08443 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.004297 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.683666 B = 6514.856143 C = 7248.894034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.623 5.623 3 C 0.202 3.798 4 C 0.181 3.819 5 N -0.284 5.284 6 N -0.286 5.286 7 C 0.150 3.850 8 N -0.474 5.474 9 C 0.106 3.894 10 C -0.130 4.130 11 C -0.039 4.039 12 C 0.514 3.486 13 O -0.534 6.534 14 C -0.128 4.128 15 C 0.040 3.960 16 C -0.528 4.528 17 H 0.055 0.945 18 C 0.059 3.941 19 N -0.891 5.891 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.276 1.276 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.099 0.901 28 H 0.109 0.891 29 H 0.098 0.902 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.021 0.979 38 H 0.023 0.977 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.348 16.047 -3.652 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.359 5.359 3 C 0.076 3.924 4 C -0.087 4.087 5 N -0.125 5.125 6 N -0.128 5.128 7 C -0.118 4.118 8 N -0.165 5.165 9 C -0.016 4.016 10 C -0.168 4.168 11 C -0.079 4.079 12 C 0.304 3.696 13 O -0.410 6.410 14 C -0.168 4.168 15 C 0.002 3.998 16 C -0.566 4.566 17 H 0.073 0.927 18 C -0.142 4.142 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.202 1.202 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.072 0.928 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.117 0.883 28 H 0.127 0.873 29 H 0.116 0.884 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.124 0.876 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.100 0.900 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.042 0.958 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.955 16.687 -3.870 17.156 hybrid contribution 0.417 -1.697 0.350 1.783 sum 1.373 14.990 -3.520 15.458 Atomic orbital electron populations 1.21806 0.78766 1.03293 1.02115 1.48130 1.07424 1.04948 1.75388 1.19593 0.99655 0.86798 0.86387 1.25026 0.85386 1.00025 0.98269 1.74356 1.23317 1.16454 0.98392 1.73929 1.05211 1.20625 1.12991 1.25966 0.98179 0.98504 0.89149 1.47157 1.18333 1.37931 1.13063 1.22464 0.80529 0.97437 1.01189 1.22842 0.97154 1.02396 0.94404 1.20648 0.88174 1.03375 0.95655 1.21718 0.88490 0.85547 0.73796 1.90607 1.14343 1.87311 1.48714 1.21911 1.00775 0.91578 1.02490 1.18886 0.93089 0.89383 0.98406 1.21175 0.92926 0.90973 1.51575 0.92651 1.25005 0.94826 0.99221 0.95179 1.69977 1.06068 1.26746 1.50134 0.86649 0.79578 0.83091 0.78623 1.20230 1.21241 1.20181 0.92752 0.90196 0.91044 0.88260 0.87308 0.88413 0.87816 0.89409 0.87620 0.88138 0.88089 0.89955 0.90279 0.96104 0.95811 0.92883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 10.29 59.85 0.62 1.59 16 2 N -0.62 -9.17 2.86 -182.95 -0.52 -9.69 16 3 C 0.20 2.67 6.07 -5.20 -0.03 2.64 16 4 C 0.18 2.76 7.88 -154.89 -1.22 1.54 16 5 N -0.28 -4.82 12.21 32.82 0.40 -4.42 16 6 N -0.29 -4.87 12.22 32.93 0.40 -4.47 16 7 C 0.15 2.12 8.69 -154.84 -1.35 0.77 16 8 N -0.47 -6.78 3.62 -109.39 -0.40 -7.18 16 9 C 0.11 1.23 7.51 -3.13 -0.02 1.20 16 10 C -0.13 -0.97 7.17 -25.16 -0.18 -1.15 16 11 C -0.04 -0.34 6.85 -26.74 -0.18 -0.53 16 12 C 0.51 9.55 7.67 -10.99 -0.08 9.47 16 13 O -0.53 -11.28 15.28 5.56 0.08 -11.19 16 14 C -0.13 -2.55 4.19 -27.88 -0.12 -2.67 16 15 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 16 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 17 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 18 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 19 N -0.89 -26.80 13.29 55.43 0.74 -26.06 16 20 Si 0.89 21.35 29.54 -169.99 -5.02 16.33 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 25 H 0.08 0.88 6.44 -51.93 -0.33 0.54 16 26 H 0.07 0.65 7.89 -51.93 -0.41 0.24 16 27 H 0.10 1.33 7.42 -51.93 -0.39 0.94 16 28 H 0.11 1.13 7.89 -51.93 -0.41 0.72 16 29 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 30 H 0.10 1.42 8.12 -51.93 -0.42 1.00 16 31 H 0.09 0.53 8.14 -51.92 -0.42 0.11 16 32 H 0.11 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.08 1.50 7.40 -51.93 -0.38 1.11 16 36 H 0.08 1.51 8.11 -51.93 -0.42 1.09 16 37 H 0.02 0.59 8.10 -51.93 -0.42 0.17 16 38 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -35.72 329.88 -8.13 -43.85 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -5.69 Total: -2.50 kcal Atomic # 6 Polarization: 3.46 SS G_CDS: -3.10 Total: 0.36 kcal Atomic # 7 Polarization: -52.44 SS G_CDS: 0.62 Total: -51.82 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.19 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -35.72 -8.13 -43.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324062971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.614 kcal (2) G-P(sol) polarization free energy of solvation -35.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.852 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.79 seconds