Wall clock time and date at job start Wed Apr 15 2020 11:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46495 * 119.99943 * 2 1 4 4 C 1.50701 * 109.47158 * 269.99473 * 3 2 1 5 5 N 1.30504 * 126.36608 * 89.97411 * 4 3 2 6 6 N 1.28574 * 109.66827 * 179.97438 * 5 4 3 7 7 C 1.30680 * 109.63080 * 359.96416 * 6 5 4 8 8 N 1.35166 * 107.33702 * 0.13295 * 7 6 5 9 9 C 1.46796 * 111.15518 * 179.76443 * 8 7 6 10 10 C 1.54428 * 105.55615 * 17.05541 * 9 8 7 11 11 C 1.51341 * 142.71957 * 180.25430 * 7 6 5 12 12 C 1.34779 * 120.00081 * 179.97438 * 2 1 3 13 13 O 1.21273 * 120.00081 * 180.02562 * 12 2 1 14 14 C 1.50698 * 119.99607 * 0.02562 * 12 2 1 15 15 C 1.53007 * 109.46785 * 179.97438 * 14 12 2 16 16 C 1.50707 * 109.46789 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00145 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99599 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00005 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99706 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47003 * 60.00200 * 20 18 16 22 22 H 1.48498 * 109.46831 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.47348 * 299.99981 * 20 18 16 24 24 H 1.08996 * 109.46939 * 90.00263 * 1 2 3 25 25 H 1.08998 * 109.46833 * 210.00015 * 1 2 3 26 26 H 1.09000 * 109.46690 * 330.00429 * 1 2 3 27 27 H 1.09005 * 109.47250 * 150.00140 * 3 2 1 28 28 H 1.09000 * 109.47361 * 29.99740 * 3 2 1 29 29 H 1.09000 * 110.23399 * 136.08124 * 9 8 7 30 30 H 1.08999 * 110.22839 * 258.04069 * 9 8 7 31 31 H 1.09007 * 110.95665 * 92.51620 * 10 9 8 32 32 H 1.08994 * 110.96475 * 216.25298 * 10 9 8 33 33 H 1.09005 * 110.47310 * 44.74157 * 11 7 6 34 34 H 1.08996 * 110.58598 * 282.19272 * 11 7 6 35 35 H 1.08998 * 109.47404 * 299.99638 * 14 12 2 36 36 H 1.08998 * 109.47195 * 60.00060 * 14 12 2 37 37 H 1.08998 * 109.46878 * 299.99990 * 15 14 12 38 38 H 1.09003 * 109.46990 * 60.00523 * 15 14 12 39 39 H 0.96998 * 119.99974 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 7 1.6675 2.4521 -2.1506 6 7 2.1931 2.6234 -3.3115 7 6 3.3353 1.9916 -3.3738 8 7 3.5282 1.3893 -2.1792 9 6 4.7938 0.6457 -2.1590 10 6 5.6142 1.1922 -3.3477 11 6 4.5019 1.7005 -4.2930 12 6 2.1390 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3797 -3.6352 0.0005 16 6 1.6261 -4.9403 -0.0001 17 1 0.5461 -4.9403 -0.0001 18 6 2.3155 -6.1344 0.0003 19 7 3.6307 -6.1344 0.0018 20 14 1.3815 -7.7521 0.0002 21 1 0.5282 -7.8309 -1.2126 22 1 2.3465 -8.8808 0.0001 23 1 0.5273 -7.8306 1.2124 24 1 -0.3633 0.0000 -1.0276 25 1 -0.3633 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 3.1500 1.1384 0.5138 28 1 1.6085 2.0284 0.5138 29 1 5.3216 0.8253 -1.2224 30 1 4.6066 -0.4202 -2.2886 31 1 6.2612 2.0105 -3.0314 32 1 6.1939 0.3986 -3.8190 33 1 4.8211 2.6092 -4.8034 34 1 4.2361 0.9308 -5.0175 35 1 0.7585 -2.5298 0.8903 36 1 0.7591 -2.5302 -0.8897 37 1 3.0063 -3.5774 -0.8895 38 1 3.0063 -3.5775 0.8906 39 1 4.1157 -6.9744 0.0024 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324062971.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:39 Heat of formation + Delta-G solvation = 24.166864 kcal Electronic energy + Delta-G solvation = -21791.243252 eV Core-core repulsion = 18541.539704 eV Total energy + Delta-G solvation = -3249.703548 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -44.46886 -40.92600 -38.26532 -36.85555 -35.62557 -33.80988 -32.91912 -31.29865 -29.63719 -28.16101 -27.92640 -26.44281 -23.78266 -23.38020 -22.09005 -21.81716 -20.10619 -18.83078 -18.16562 -17.67556 -17.52532 -16.98983 -16.68574 -16.45514 -15.81038 -15.50008 -14.81932 -14.64850 -14.37272 -14.22938 -14.15878 -13.88634 -13.80250 -13.51817 -13.32206 -12.98644 -12.80796 -12.62119 -12.53567 -12.50875 -12.29761 -11.95409 -11.63160 -11.49788 -11.34625 -11.12944 -10.84624 -10.57128 -10.16585 -9.91621 -8.19860 -6.33260 0.61858 1.41054 1.41768 1.44945 1.52636 1.58465 1.62064 2.14178 2.42097 2.72411 3.13440 3.24305 3.41031 3.59103 3.75920 3.85584 4.04067 4.27568 4.31234 4.37742 4.41586 4.44699 4.45347 4.51160 4.67125 4.76275 4.82074 4.87587 4.96939 5.01659 5.05142 5.14501 5.36944 5.47710 5.60056 5.77434 5.82108 6.15822 6.22845 6.83503 7.11063 7.36839 7.58073 8.92255 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021390 B = 0.004297 C = 0.003862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.683666 B = 6514.856143 C = 7248.894034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.613 5.613 3 C 0.203 3.797 4 C 0.169 3.831 5 N -0.305 5.305 6 N -0.327 5.327 7 C 0.152 3.848 8 N -0.483 5.483 9 C 0.099 3.901 10 C -0.112 4.112 11 C -0.038 4.038 12 C 0.512 3.488 13 O -0.569 6.569 14 C -0.116 4.116 15 C 0.049 3.951 16 C -0.546 4.546 17 H 0.071 0.929 18 C -0.001 4.001 19 N -0.934 5.934 20 Si 0.969 3.031 21 H -0.265 1.265 22 H -0.286 1.286 23 H -0.263 1.263 24 H 0.048 0.952 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.095 0.905 28 H 0.142 0.858 29 H 0.099 0.901 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.091 0.909 37 H -0.018 1.018 38 H -0.013 1.013 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.403 16.347 -3.915 16.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.347 5.347 3 C 0.077 3.923 4 C -0.099 4.099 5 N -0.147 5.147 6 N -0.168 5.168 7 C -0.117 4.117 8 N -0.174 5.174 9 C -0.022 4.022 10 C -0.150 4.150 11 C -0.077 4.077 12 C 0.302 3.698 13 O -0.447 6.447 14 C -0.156 4.156 15 C 0.011 3.989 16 C -0.584 4.584 17 H 0.090 0.910 18 C -0.199 4.199 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.190 1.190 22 H -0.211 1.211 23 H -0.187 1.187 24 H 0.067 0.933 25 H 0.108 0.892 26 H 0.122 0.878 27 H 0.114 0.886 28 H 0.160 0.840 29 H 0.117 0.883 30 H 0.094 0.906 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.145 0.855 34 H 0.129 0.871 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.000 1.000 38 H 0.006 0.994 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.036 17.026 -4.136 17.521 hybrid contribution 0.732 -1.747 0.420 1.940 sum 0.696 15.279 -3.715 15.740 Atomic orbital electron populations 1.22063 0.76560 1.05439 1.02424 1.48047 1.08743 1.04276 1.73597 1.19820 1.00088 0.86574 0.85786 1.25311 0.85714 1.00019 0.98884 1.74251 1.24222 1.17368 0.98811 1.73824 1.06927 1.22618 1.13452 1.26885 0.98109 0.96707 0.90005 1.47452 1.18831 1.37975 1.13144 1.22638 0.80228 0.95937 1.03410 1.22905 0.96423 1.03587 0.92062 1.20963 0.86484 1.04969 0.95290 1.21407 0.87959 0.86354 0.74057 1.90597 1.15684 1.87879 1.50569 1.21652 0.99462 0.90343 1.04147 1.18640 0.93468 0.91994 0.94790 1.21657 0.93865 0.91756 1.51106 0.91044 1.26041 0.95698 1.03611 0.94543 1.70142 1.08104 1.27863 1.51273 0.85444 0.78175 0.77701 0.79381 1.19024 1.21145 1.18735 0.93284 0.89240 0.87833 0.88641 0.84007 0.88257 0.90650 0.87207 0.85282 0.85457 0.87061 0.87628 0.89117 0.99986 0.99410 0.92805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.62 10.29 127.77 1.31 2.93 16 2 N -0.61 -17.42 2.86 -851.13 -2.43 -19.86 16 3 C 0.20 5.19 6.07 85.63 0.52 5.71 16 4 C 0.17 5.13 7.88 137.94 1.09 6.22 16 5 N -0.31 -10.32 12.21 -50.09 -0.61 -10.94 16 6 N -0.33 -11.11 12.22 -49.74 -0.61 -11.72 16 7 C 0.15 4.18 8.69 138.24 1.20 5.38 16 8 N -0.48 -13.77 3.62 -499.99 -1.81 -15.58 16 9 C 0.10 2.30 7.51 86.81 0.65 2.95 16 10 C -0.11 -1.43 7.17 31.62 0.23 -1.21 16 11 C -0.04 -0.59 6.85 30.59 0.21 -0.38 16 12 C 0.51 19.19 7.67 87.66 0.67 19.86 16 13 O -0.57 -24.94 15.28 -3.01 -0.05 -24.99 16 14 C -0.12 -4.64 4.19 29.85 0.13 -4.52 16 15 C 0.05 2.63 4.26 29.85 0.13 2.76 16 16 C -0.55 -30.58 9.11 25.60 0.23 -30.35 16 17 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 18 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 19 N -0.93 -57.65 13.29 21.45 0.28 -57.37 16 20 Si 0.97 43.57 29.54 68.60 2.03 45.60 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.68 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 24 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 25 H 0.09 1.73 6.44 -2.39 -0.02 1.72 16 26 H 0.10 1.55 7.89 -2.39 -0.02 1.54 16 27 H 0.10 2.53 7.42 -2.38 -0.02 2.51 16 28 H 0.14 2.65 7.89 -2.39 -0.02 2.63 16 29 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.08 2.18 8.12 -2.39 -0.02 2.16 16 31 H 0.11 0.98 8.14 -2.38 -0.02 0.96 16 32 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 34 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.11 3.69 7.40 -2.39 -0.02 3.67 16 36 H 0.09 3.39 8.11 -2.39 -0.02 3.37 16 37 H -0.02 -1.12 8.10 -2.39 -0.02 -1.13 16 38 H -0.01 -0.76 8.10 -2.39 -0.02 -0.78 16 39 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -80.87 329.88 4.68 -76.19 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: 1.05 Total: 8.90 kcal Atomic # 6 Polarization: 2.94 SS G_CDS: 6.83 Total: 9.77 kcal Atomic # 7 Polarization: -110.29 SS G_CDS: -5.18 Total: -115.47 kcal Atomic # 8 Polarization: -24.94 SS G_CDS: -0.05 Total: -24.99 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -80.87 4.68 -76.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324062971.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.356 kcal (2) G-P(sol) polarization free energy of solvation -80.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds