Wall clock time and date at job start Wed Apr 15 2020 11:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.33008 * 1 3 3 C 1.50697 * 119.99933 * 2 1 4 4 N 1.46904 * 109.46879 * 95.00186 * 3 2 1 5 5 C 1.46894 * 110.99966 * 170.00274 * 4 3 2 6 6 C 1.46904 * 111.00211 * 293.95525 * 4 3 2 7 7 C 1.47063 * 120.00155 * 180.02562 * 2 1 3 8 8 O 1.21634 * 119.99890 * 0.02562 * 7 2 1 9 9 N 1.34779 * 120.00251 * 179.97438 * 7 2 1 10 10 C 1.40060 * 120.00181 * 179.97438 * 9 7 2 11 11 C 1.40425 * 125.97837 * 0.02562 * 10 9 7 12 12 C 1.35239 * 107.86772 * 179.71619 * 11 10 9 13 13 N 1.34962 * 107.86411 * 0.42152 * 12 11 10 14 14 C 1.46500 * 125.97410 * 179.83729 * 13 12 11 15 15 C 1.50706 * 109.47299 * 124.71196 * 14 13 12 16 16 H 1.07998 * 119.99503 * 0.02562 * 15 14 13 17 17 C 1.37871 * 120.00434 * 180.02562 * 15 14 13 18 18 N 1.31516 * 119.99826 * 359.72891 * 17 15 14 19 19 Si 1.86800 * 120.00406 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47364 * 179.72558 * 19 17 15 21 21 H 1.48508 * 109.46883 * 299.72681 * 19 17 15 22 22 H 1.48497 * 109.46870 * 59.72491 * 19 17 15 23 23 N 1.31239 * 125.97748 * 179.97438 * 10 9 7 24 24 H 1.07998 * 120.00571 * 359.97438 * 1 2 3 25 25 H 1.08003 * 120.00277 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47423 * 215.00453 * 3 2 1 27 27 H 1.09008 * 109.47082 * 335.01015 * 3 2 1 28 28 H 1.08999 * 109.47507 * 60.00080 * 5 4 3 29 29 H 1.09002 * 109.47390 * 180.02562 * 5 4 3 30 30 H 1.09004 * 109.47061 * 300.00194 * 5 4 3 31 31 H 1.09004 * 109.46848 * 59.99719 * 6 4 3 32 32 H 1.08997 * 109.46989 * 179.97438 * 6 4 3 33 33 H 1.08998 * 109.47132 * 300.00093 * 6 4 3 34 34 H 0.96999 * 119.99333 * 359.97438 * 9 7 2 35 35 H 1.08003 * 126.06238 * 0.02562 * 11 10 9 36 36 H 1.08001 * 126.06343 * 180.28980 * 12 11 10 37 37 H 1.09004 * 109.47078 * 4.71958 * 14 13 12 38 38 H 1.08993 * 109.47364 * 244.71729 * 14 13 12 39 39 H 0.97000 * 120.00236 * 0.27947 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3301 0.0000 0.0000 3 6 2.0836 1.3051 0.0000 4 7 2.4329 1.6687 1.3798 5 6 3.3662 2.8028 1.4050 6 6 1.2284 1.9606 2.1684 7 6 2.0654 -1.2736 -0.0006 8 8 1.4573 -2.3270 -0.0015 9 7 3.4132 -1.2736 -0.0011 10 6 4.1135 -2.4865 -0.0011 11 6 3.5419 -3.7692 -0.0011 12 6 4.5487 -4.6721 -0.0075 13 7 5.7146 -3.9923 -0.0019 14 6 7.0552 -4.5831 -0.0025 15 6 7.8433 -4.0393 -1.1663 16 1 7.3909 -3.3249 -1.8380 17 6 9.1418 -4.4540 -1.3735 18 7 9.6945 -5.3199 -0.5523 19 14 10.1189 -3.7795 -2.8156 20 1 11.4798 -4.3738 -2.8128 21 1 9.4303 -4.1254 -4.0851 22 1 10.2232 -2.3031 -2.6955 23 7 5.4188 -2.6232 -0.0020 24 1 -0.5401 0.9352 0.0004 25 1 -0.5401 -0.9353 -0.0004 26 1 2.9942 1.1989 -0.5895 27 1 1.4585 2.0855 -0.4342 28 1 2.9043 3.6644 0.9229 29 1 3.6086 3.0510 2.4384 30 1 4.2787 2.5344 0.8725 31 1 0.5867 1.0798 2.1909 32 1 1.5158 2.2264 3.1857 33 1 0.6890 2.7915 1.7139 34 1 3.8981 -0.4335 -0.0015 35 1 2.4857 -3.9945 -0.0015 36 1 4.4391 -5.7466 -0.0136 37 1 6.9749 -5.6664 -0.0926 38 1 7.5630 -4.3327 0.9289 39 1 9.1872 -5.6700 0.1967 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001444475138.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:07 Heat of formation + Delta-G solvation = 50.824824 kcal Electronic energy + Delta-G solvation = -21110.548680 eV Core-core repulsion = 17862.001108 eV Total energy + Delta-G solvation = -3248.547572 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.31377 -40.82499 -38.52094 -36.45811 -35.51403 -34.33738 -32.61311 -31.03482 -28.61427 -28.24066 -27.87107 -25.67852 -24.42479 -22.95357 -22.42966 -21.48927 -20.01425 -19.22857 -18.33184 -17.90734 -16.99155 -16.69747 -16.24431 -16.03862 -15.73480 -15.70334 -15.49347 -15.27641 -14.95601 -14.20767 -14.05803 -13.92795 -13.74929 -13.37327 -13.20708 -13.13998 -12.68202 -12.61335 -12.57480 -12.21325 -12.02043 -11.95043 -11.66053 -11.00799 -10.96220 -10.69648 -10.60478 -9.83850 -9.28018 -9.19378 -8.78049 -6.56398 0.22978 1.04950 1.33402 1.51038 1.57720 1.72099 1.79563 2.31777 2.39582 2.49479 3.00915 3.17146 3.50806 3.75467 3.89053 4.12526 4.24149 4.31190 4.50583 4.55212 4.60551 4.66767 4.71890 4.74292 4.77466 4.81471 4.82500 5.05724 5.06857 5.07862 5.22174 5.37668 5.55329 5.82210 5.92686 6.02450 6.08917 6.22001 6.26710 6.41267 6.93798 7.06391 7.19580 8.57921 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021614 B = 0.003774 C = 0.003436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.140358 B = 7417.262594 C = 8147.201736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.184 4.184 3 C 0.090 3.910 4 N -0.568 5.568 5 C 0.024 3.976 6 C 0.021 3.979 7 C 0.561 3.439 8 O -0.557 6.557 9 N -0.617 5.617 10 C 0.267 3.733 11 C -0.291 4.291 12 C 0.055 3.945 13 N -0.343 5.343 14 C 0.259 3.741 15 C -0.622 4.622 16 H 0.045 0.955 17 C -0.019 4.019 18 N -0.923 5.923 19 Si 1.121 2.879 20 H -0.274 1.274 21 H -0.271 1.271 22 H -0.275 1.275 23 N -0.346 5.346 24 H 0.154 0.846 25 H 0.112 0.888 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.044 0.956 34 H 0.421 0.579 35 H 0.169 0.831 36 H 0.203 0.797 37 H 0.055 0.945 38 H 0.016 0.984 39 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.997 15.736 2.049 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.187 4.187 3 C -0.037 4.037 4 N -0.293 5.293 5 C -0.124 4.124 6 C -0.127 4.127 7 C 0.352 3.648 8 O -0.435 6.435 9 N -0.265 5.265 10 C 0.012 3.988 11 C -0.322 4.322 12 C -0.093 4.093 13 N -0.124 5.124 14 C 0.140 3.860 15 C -0.660 4.660 16 H 0.063 0.937 17 C -0.218 4.218 18 N -0.559 5.559 19 Si 0.941 3.059 20 H -0.199 1.199 21 H -0.196 1.196 22 H -0.200 1.200 23 N -0.177 5.177 24 H 0.172 0.828 25 H 0.131 0.869 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.091 0.909 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.062 0.938 34 H 0.259 0.741 35 H 0.187 0.813 36 H 0.220 0.780 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -16.477 15.101 1.545 22.403 hybrid contribution -2.039 0.325 0.741 2.193 sum -18.515 15.426 2.285 24.207 Atomic orbital electron populations 1.25003 0.93458 1.04991 0.86224 1.21235 0.95773 0.91844 1.09892 1.21127 0.99730 0.92814 0.90042 1.61918 1.16033 1.39325 1.11985 1.22413 0.96005 0.91136 1.02827 1.22459 0.91481 1.00650 0.98070 1.19070 0.80331 0.90819 0.74581 1.90688 1.68286 1.34060 1.50503 1.42532 1.06468 1.05671 1.71828 1.19508 0.90073 0.88389 1.00856 1.21744 1.01106 0.89450 1.19945 1.23186 0.84615 1.00737 1.00743 1.48577 1.07186 1.02321 1.54363 1.19428 0.75766 0.93392 0.97414 1.22291 1.01217 1.29496 1.13030 0.93669 1.27300 0.96260 0.94403 1.03848 1.70945 1.40068 1.29357 1.15547 0.82877 0.75008 0.75956 0.72053 1.19904 1.19613 1.20039 1.77280 1.12864 0.97091 1.30443 0.82810 0.86938 0.90262 0.90411 0.94051 0.90933 0.91584 0.91537 0.91254 0.93767 0.74097 0.81332 0.78026 0.92775 0.96612 0.92979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.79 12.52 66.65 0.83 0.04 16 2 C -0.18 -3.57 4.89 -18.71 -0.09 -3.66 16 3 C 0.09 1.38 4.59 85.56 0.39 1.77 16 4 N -0.57 -9.44 5.01 -953.46 -4.78 -14.22 16 5 C 0.02 0.33 9.57 127.69 1.22 1.55 16 6 C 0.02 0.27 9.20 127.69 1.18 1.45 16 7 C 0.56 16.88 7.72 86.56 0.67 17.55 16 8 O -0.56 -19.92 13.34 -4.14 -0.06 -19.97 16 9 N -0.62 -20.67 5.39 -310.81 -1.68 -22.34 16 10 C 0.27 11.34 8.11 133.36 1.08 12.42 16 11 C -0.29 -11.98 9.60 22.11 0.21 -11.77 16 12 C 0.06 2.27 11.43 83.52 0.96 3.23 16 13 N -0.34 -16.71 3.67 -351.84 -1.29 -18.00 16 14 C 0.26 13.68 5.57 85.64 0.48 14.16 16 15 C -0.62 -36.07 9.24 25.60 0.24 -35.83 16 16 H 0.04 2.74 7.81 -2.91 -0.02 2.71 16 17 C -0.02 -1.05 5.46 84.65 0.46 -0.59 16 18 N -0.92 -54.59 13.65 21.45 0.29 -54.30 16 19 Si 1.12 50.14 29.90 68.60 2.05 52.20 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 23 N -0.35 -16.93 12.42 -54.49 -0.68 -17.61 16 24 H 0.15 0.90 8.02 -2.91 -0.02 0.88 16 25 H 0.11 1.80 7.49 -2.91 -0.02 1.78 16 26 H 0.08 1.29 6.88 -2.39 -0.02 1.27 16 27 H 0.08 0.79 7.99 -2.38 -0.02 0.77 16 28 H 0.04 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 0.97 8.12 -2.39 -0.02 0.95 16 30 H 0.07 0.99 8.12 -2.39 -0.02 0.97 16 31 H 0.07 0.90 6.41 -2.39 -0.02 0.89 16 32 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 33 H 0.04 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.42 12.37 7.04 -92.71 -0.65 11.71 16 35 H 0.17 6.65 5.91 -2.91 -0.02 6.63 16 36 H 0.20 6.50 8.06 -2.91 -0.02 6.48 16 37 H 0.05 2.73 7.94 -2.39 -0.02 2.71 16 38 H 0.02 0.89 8.00 -2.39 -0.02 0.87 16 39 H 0.26 15.26 7.22 -92.71 -0.67 14.59 16 Total: -1.00 -74.01 332.03 2.00 -72.01 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.50 Total: 21.92 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 7.62 Total: 0.32 kcal Atomic # 7 Polarization: -118.35 SS G_CDS: -8.13 Total: -126.47 kcal Atomic # 8 Polarization: -19.92 SS G_CDS: -0.06 Total: -19.97 kcal Atomic # 14 Polarization: 50.14 SS G_CDS: 2.05 Total: 52.20 kcal Total: -74.01 2.00 -72.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001444475138.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.836 kcal (2) G-P(sol) polarization free energy of solvation -74.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds