Wall clock time and date at job start Wed Apr 15 2020 11:43:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 119.99854 * 2 1 4 4 H 1.07999 * 120.00057 * 154.60424 * 3 2 1 5 5 C 1.38818 * 120.00009 * 334.60841 * 3 2 1 6 6 N 1.31618 * 119.99903 * 3.91697 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 183.91431 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46502 * 119.99914 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46989 * 90.00011 * 11 2 1 13 13 H 1.09002 * 110.88469 * 305.69381 * 12 11 2 14 14 C 1.55160 * 111.00327 * 181.82054 * 12 11 2 15 15 C 1.54369 * 102.92153 * 206.45207 * 14 12 11 16 16 N 1.47027 * 107.28611 * 22.13658 * 15 14 12 17 17 C 1.34776 * 125.64456 * 181.05927 * 16 15 14 18 18 O 1.21573 * 119.99981 * 180.02562 * 17 16 15 19 19 C 1.47709 * 120.00001 * 0.04127 * 17 16 15 20 20 C 1.41504 * 126.51554 * 179.97438 * 19 17 16 21 21 C 1.35360 * 105.50273 * 179.97438 * 20 19 17 22 22 N 1.35037 * 107.22990 * 0.02562 * 21 20 19 23 23 H 0.96997 * 124.88306 * 180.02562 * 22 21 20 24 24 N 1.28466 * 110.23056 * 359.72349 * 22 21 20 25 25 C 1.47420 * 108.70354 * 1.09267 * 16 15 14 26 26 H 1.08992 * 109.47396 * 84.46423 * 1 2 3 27 27 H 1.09003 * 109.47061 * 324.46114 * 1 2 3 28 28 H 1.09007 * 109.47249 * 204.46916 * 1 2 3 29 29 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 30 30 H 1.09000 * 109.46590 * 209.99663 * 11 2 1 31 31 H 1.08989 * 109.46908 * 329.99685 * 11 2 1 32 32 H 1.09008 * 110.71495 * 324.78239 * 14 12 11 33 33 H 1.09000 * 110.72268 * 88.05231 * 14 12 11 34 34 H 1.08997 * 109.84548 * 262.73448 * 15 14 12 35 35 H 1.08994 * 110.03046 * 141.64232 * 15 14 12 36 36 H 1.08001 * 127.24945 * 0.02562 * 20 19 17 37 37 H 1.08000 * 126.38666 * 179.97438 * 21 20 19 38 38 H 1.09000 * 110.36800 * 217.03578 * 25 16 15 39 39 H 1.09001 * 110.45994 * 94.76113 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1514 1.2312 0.4011 5 6 1.5561 2.3301 -0.5155 6 7 0.3086 2.2930 -0.9334 7 14 2.5281 3.9221 -0.6160 8 1 3.7224 3.7195 -1.4748 9 1 1.6736 4.9877 -1.1989 10 1 2.9604 4.3250 0.7463 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 1.5208 -1.7500 -2.0077 14 6 3.1878 -3.0754 -1.4857 15 6 3.9369 -3.0224 -2.8343 16 7 4.0793 -1.6054 -3.1996 17 6 4.6613 -1.1382 -4.3219 18 8 4.7236 0.0595 -4.5210 19 6 5.2230 -2.0814 -5.3101 20 6 5.8601 -1.7446 -6.5279 21 6 6.2059 -2.9247 -7.0937 22 7 5.7963 -3.9038 -6.2588 23 1 5.9161 -4.8534 -6.4165 24 7 5.2310 -3.3966 -5.2228 25 6 3.4808 -0.7802 -2.1346 26 1 -0.3634 0.0991 -1.0228 27 1 -0.3633 0.8363 0.5974 28 1 -0.3634 -0.9354 0.4257 29 1 -0.1060 3.0924 -1.2939 30 1 3.1499 -1.1386 0.5133 31 1 1.6084 -2.0285 0.5129 32 1 3.8911 -3.1605 -0.6572 33 1 2.4735 -3.8986 -1.4726 34 1 3.3617 -3.5460 -3.5979 35 1 4.9211 -3.4797 -2.7330 36 1 6.0345 -0.7545 -6.9225 37 1 6.7138 -3.0583 -8.0374 38 1 2.9796 0.0875 -2.5634 39 1 4.2440 -0.4636 -1.4236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481476982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:10 Heat of formation + Delta-G solvation = 74.844646 kcal Electronic energy + Delta-G solvation = -21925.012199 eV Core-core repulsion = 18677.506205 eV Total energy + Delta-G solvation = -3247.505994 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.69558 -39.39886 -37.25262 -35.21672 -32.42840 -31.69538 -30.88238 -30.28451 -28.56529 -25.94825 -25.75555 -23.88780 -22.20684 -21.73254 -21.03343 -19.47545 -19.08972 -18.27670 -16.84803 -16.65699 -15.95509 -15.43724 -14.95645 -14.61298 -14.06255 -13.77509 -13.47509 -13.38476 -13.17672 -12.87940 -12.73846 -12.16029 -12.05832 -11.74110 -11.10922 -11.00011 -10.92650 -10.66620 -10.58583 -10.26760 -10.20015 -9.98078 -9.90458 -9.72099 -9.65239 -9.49647 -9.32384 -8.39305 -8.16991 -6.64498 -5.64236 -3.10501 1.60390 2.06978 2.72189 3.38744 3.49160 3.54364 3.58653 3.63839 4.41421 4.59801 4.69447 4.95773 5.07778 5.24468 5.34702 5.53766 5.55818 5.65163 5.74649 5.89733 5.91123 6.12878 6.15511 6.25037 6.35322 6.38161 6.58340 6.61926 6.75105 6.83491 6.86731 6.95770 7.07990 7.56604 7.70571 7.85554 7.93320 7.94155 8.51402 8.51647 9.35703 9.96687 10.46284 11.40503 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021352 B = 0.004961 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.067731 B = 5642.600496 C = 6615.596211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.167 3.833 2 N -0.605 5.605 3 C -0.254 4.254 4 H 0.067 0.933 5 C 0.010 3.990 6 N -0.908 5.908 7 Si 0.897 3.103 8 H -0.279 1.279 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.164 3.836 12 C -0.115 4.115 13 H 0.076 0.924 14 C -0.132 4.132 15 C 0.114 3.886 16 N -0.606 5.606 17 C 0.606 3.394 18 O -0.531 6.531 19 C -0.001 4.001 20 C -0.181 4.181 21 C -0.020 4.020 22 N -0.389 5.389 23 H 0.444 0.556 24 N -0.257 5.257 25 C 0.128 3.872 26 H 0.023 0.977 27 H 0.052 0.948 28 H -0.010 1.010 29 H 0.252 0.748 30 H 0.045 0.955 31 H 0.042 0.958 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.162 0.838 37 H 0.183 0.817 38 H 0.089 0.911 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.752 -16.174 -9.239 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.328 5.328 3 C -0.383 4.383 4 H 0.085 0.915 5 C -0.188 4.188 6 N -0.553 5.553 7 Si 0.726 3.274 8 H -0.205 1.205 9 H -0.216 1.216 10 H -0.211 1.211 11 C 0.036 3.964 12 C -0.138 4.138 13 H 0.094 0.906 14 C -0.171 4.171 15 C -0.010 4.010 16 N -0.339 5.339 17 C 0.392 3.608 18 O -0.406 6.406 19 C -0.162 4.162 20 C -0.209 4.209 21 C -0.164 4.164 22 N -0.103 5.103 23 H 0.288 0.712 24 N -0.094 5.094 25 C 0.007 3.993 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.008 0.992 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.091 0.909 33 H 0.093 0.907 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.180 0.820 37 H 0.200 0.800 38 H 0.107 0.893 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.342 -16.143 -8.752 20.602 hybrid contribution 0.855 0.960 -1.030 1.648 sum 10.197 -15.183 -9.782 20.741 Atomic orbital electron populations 1.20863 0.82421 0.95209 0.99242 1.43940 1.01966 1.00598 1.86268 1.19093 0.99148 0.86297 1.33777 0.91530 1.25107 0.96448 0.98661 0.98626 1.70062 1.11303 1.28019 1.45966 0.86450 0.79765 0.83314 0.77825 1.20530 1.21643 1.21120 1.20786 0.95919 0.88336 0.91396 1.23181 0.97309 0.92055 1.01214 0.90605 1.22759 0.99294 0.98972 0.96053 1.21974 1.00158 0.82065 0.96779 1.48534 1.56652 1.08749 1.19951 1.16515 0.78258 0.86344 0.79693 1.90832 1.58584 1.14760 1.76451 1.22111 1.06015 0.89960 0.98156 1.21843 1.04110 0.99497 0.95431 1.22906 1.05917 0.88207 0.99348 1.43415 1.42609 1.10102 1.14182 0.71202 1.73694 1.15656 1.10843 1.09166 1.22272 0.94943 0.94481 0.87565 0.95821 0.92974 0.99184 0.93747 0.93626 0.93981 0.90910 0.90685 0.91633 0.91724 0.81995 0.79956 0.89259 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.18 8.99 59.85 0.54 4.71 16 2 N -0.61 -15.12 2.90 -181.12 -0.53 -15.65 16 3 C -0.25 -6.97 8.85 -15.06 -0.13 -7.10 16 4 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 5 C 0.01 0.28 5.38 -17.43 -0.09 0.19 16 6 N -0.91 -26.89 10.13 55.49 0.56 -26.33 16 7 Si 0.90 22.78 29.56 -169.99 -5.02 17.76 16 8 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 9 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 10 H -0.28 -7.06 7.11 56.52 0.40 -6.66 16 11 C 0.16 3.26 5.24 -4.04 -0.02 3.24 16 12 C -0.12 -2.11 3.27 -88.47 -0.29 -2.40 16 13 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 14 C -0.13 -1.83 6.42 -24.87 -0.16 -1.99 16 15 C 0.11 1.65 5.55 -3.04 -0.02 1.63 16 16 N -0.61 -11.15 3.33 -171.66 -0.57 -11.72 16 17 C 0.61 11.77 7.86 -12.39 -0.10 11.67 16 18 O -0.53 -12.29 17.18 5.30 0.09 -12.20 16 19 C 0.00 -0.02 6.98 -82.76 -0.58 -0.59 16 20 C -0.18 -2.26 10.81 -39.36 -0.43 -2.68 16 21 C -0.02 -0.16 12.02 -17.17 -0.21 -0.37 16 22 N -0.39 -3.27 6.83 30.47 0.21 -3.06 16 23 H 0.44 1.82 8.96 -190.44 -1.71 0.11 16 24 N -0.26 -3.26 9.75 33.42 0.33 -2.93 16 25 C 0.13 2.65 5.52 -2.53 -0.01 2.63 16 26 H 0.02 0.64 7.43 -51.93 -0.39 0.25 16 27 H 0.05 1.41 7.04 -51.93 -0.37 1.05 16 28 H -0.01 -0.23 7.83 -51.93 -0.41 -0.63 16 29 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.05 0.89 7.93 -51.93 -0.41 0.48 16 31 H 0.04 0.76 7.86 -51.94 -0.41 0.35 16 32 H 0.07 0.93 8.04 -51.92 -0.42 0.52 16 33 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 35 H 0.06 0.87 7.76 -51.93 -0.40 0.47 16 36 H 0.16 1.93 8.06 -52.49 -0.42 1.51 16 37 H 0.18 0.69 8.06 -52.49 -0.42 0.27 16 38 H 0.09 2.24 8.04 -51.93 -0.42 1.82 16 39 H 0.07 1.41 7.95 -51.93 -0.41 0.99 16 LS Contribution 322.92 15.07 4.87 4.87 Total: -1.00 -34.66 322.92 -8.53 -43.19 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -6.97 Total: -2.85 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -1.50 Total: 8.93 kcal Atomic # 7 Polarization: -59.69 SS G_CDS: 0.00 Total: -59.69 kcal Atomic # 8 Polarization: -12.29 SS G_CDS: 0.09 Total: -12.20 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -34.66 -8.53 -43.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481476982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.035 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds