Wall clock time and date at job start Wed Apr 15 2020 11:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.36938 * 119.99854 * 2 1 4 4 H 1.07999 * 120.00057 * 154.60424 * 3 2 1 5 5 C 1.38818 * 120.00009 * 334.60841 * 3 2 1 6 6 N 1.31618 * 119.99903 * 3.91697 * 5 3 2 7 7 Si 1.86800 * 119.99547 * 183.91431 * 5 3 2 8 8 H 1.48493 * 109.47192 * 60.00281 * 7 5 3 9 9 H 1.48503 * 109.46739 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47316 * 299.99485 * 7 5 3 11 11 C 1.46502 * 119.99914 * 180.02562 * 2 1 3 12 12 C 1.53001 * 109.46989 * 90.00011 * 11 2 1 13 13 H 1.09002 * 110.88469 * 305.69381 * 12 11 2 14 14 C 1.55160 * 111.00327 * 181.82054 * 12 11 2 15 15 C 1.54369 * 102.92153 * 206.45207 * 14 12 11 16 16 N 1.47027 * 107.28611 * 22.13658 * 15 14 12 17 17 C 1.34776 * 125.64456 * 181.05927 * 16 15 14 18 18 O 1.21573 * 119.99981 * 180.02562 * 17 16 15 19 19 C 1.47709 * 120.00001 * 0.04127 * 17 16 15 20 20 C 1.41504 * 126.51554 * 179.97438 * 19 17 16 21 21 C 1.35360 * 105.50273 * 179.97438 * 20 19 17 22 22 N 1.35037 * 107.22990 * 0.02562 * 21 20 19 23 23 H 0.96997 * 124.88306 * 180.02562 * 22 21 20 24 24 N 1.28466 * 110.23056 * 359.72349 * 22 21 20 25 25 C 1.47420 * 108.70354 * 1.09267 * 16 15 14 26 26 H 1.08992 * 109.47396 * 84.46423 * 1 2 3 27 27 H 1.09003 * 109.47061 * 324.46114 * 1 2 3 28 28 H 1.09007 * 109.47249 * 204.46916 * 1 2 3 29 29 H 0.96996 * 119.99876 * 180.02562 * 6 5 3 30 30 H 1.09000 * 109.46590 * 209.99663 * 11 2 1 31 31 H 1.08989 * 109.46908 * 329.99685 * 11 2 1 32 32 H 1.09008 * 110.71495 * 324.78239 * 14 12 11 33 33 H 1.09000 * 110.72268 * 88.05231 * 14 12 11 34 34 H 1.08997 * 109.84548 * 262.73448 * 15 14 12 35 35 H 1.08994 * 110.03046 * 141.64232 * 15 14 12 36 36 H 1.08001 * 127.24945 * 0.02562 * 20 19 17 37 37 H 1.08000 * 126.38666 * 179.97438 * 21 20 19 38 38 H 1.09000 * 110.36800 * 217.03578 * 25 16 15 39 39 H 1.09001 * 110.45994 * 94.76113 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1514 1.2312 0.4011 5 6 1.5561 2.3301 -0.5155 6 7 0.3086 2.2930 -0.9334 7 14 2.5281 3.9221 -0.6160 8 1 3.7224 3.7195 -1.4748 9 1 1.6736 4.9877 -1.1989 10 1 2.9604 4.3250 0.7463 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7098 -1.4433 13 1 1.5208 -1.7500 -2.0077 14 6 3.1878 -3.0754 -1.4857 15 6 3.9369 -3.0224 -2.8343 16 7 4.0793 -1.6054 -3.1996 17 6 4.6613 -1.1382 -4.3219 18 8 4.7236 0.0595 -4.5210 19 6 5.2230 -2.0814 -5.3101 20 6 5.8601 -1.7446 -6.5279 21 6 6.2059 -2.9247 -7.0937 22 7 5.7963 -3.9038 -6.2588 23 1 5.9161 -4.8534 -6.4165 24 7 5.2310 -3.3966 -5.2228 25 6 3.4808 -0.7802 -2.1346 26 1 -0.3634 0.0991 -1.0228 27 1 -0.3633 0.8363 0.5974 28 1 -0.3634 -0.9354 0.4257 29 1 -0.1060 3.0924 -1.2939 30 1 3.1499 -1.1386 0.5133 31 1 1.6084 -2.0285 0.5129 32 1 3.8911 -3.1605 -0.6572 33 1 2.4735 -3.8986 -1.4726 34 1 3.3617 -3.5460 -3.5979 35 1 4.9211 -3.4797 -2.7330 36 1 6.0345 -0.7545 -6.9225 37 1 6.7138 -3.0583 -8.0374 38 1 2.9796 0.0875 -2.5634 39 1 4.2440 -0.4636 -1.4236 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481476982.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:09 Heat of formation + Delta-G solvation = 49.918863 kcal Electronic energy + Delta-G solvation = -21926.093062 eV Core-core repulsion = 18677.506205 eV Total energy + Delta-G solvation = -3248.586857 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.58360 -40.85881 -38.82391 -37.08355 -34.03473 -32.95093 -32.19367 -31.52556 -30.03778 -27.87647 -27.55154 -25.34419 -23.51832 -22.77324 -22.56209 -21.03010 -20.25030 -19.21309 -18.81291 -18.03204 -17.33159 -16.79997 -16.63995 -16.14746 -15.63017 -15.18415 -14.95620 -14.75849 -14.62469 -14.31854 -14.08715 -13.76582 -13.68741 -13.28564 -12.91637 -12.77894 -12.64063 -12.40469 -12.11546 -12.05324 -11.95698 -11.71076 -11.55511 -11.41757 -11.26530 -10.57126 -10.46250 -10.16573 -9.65082 -8.70964 -7.82483 -5.27715 0.49751 1.22355 1.40466 1.46875 1.50023 1.80856 2.26549 2.30504 2.50004 3.29718 3.36391 3.60665 3.80513 3.91690 4.06380 4.13299 4.22625 4.38276 4.55054 4.73116 4.76530 4.78962 4.81229 4.89550 4.95685 4.98375 5.05273 5.10793 5.25546 5.30445 5.40294 5.46652 5.53589 5.67147 5.84483 6.18825 6.38123 6.50524 6.82112 7.08834 7.21323 7.93299 8.35412 9.21054 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021352 B = 0.004961 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1311.067731 B = 5642.600496 C = 6615.596211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.181 3.819 2 N -0.622 5.622 3 C -0.248 4.248 4 H 0.069 0.931 5 C -0.046 4.046 6 N -0.937 5.937 7 Si 0.949 3.051 8 H -0.291 1.291 9 H -0.294 1.294 10 H -0.269 1.269 11 C 0.161 3.839 12 C -0.107 4.107 13 H 0.055 0.945 14 C -0.114 4.114 15 C 0.115 3.885 16 N -0.610 5.610 17 C 0.595 3.405 18 O -0.589 6.589 19 C -0.039 4.039 20 C -0.215 4.215 21 C 0.022 3.978 22 N -0.363 5.363 23 H 0.467 0.533 24 N -0.260 5.260 25 C 0.134 3.866 26 H -0.007 1.007 27 H 0.023 0.977 28 H 0.029 0.971 29 H 0.244 0.756 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.108 0.892 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.238 0.762 38 H 0.030 0.970 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.480 -20.024 -9.775 25.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.345 5.345 3 C -0.378 4.378 4 H 0.087 0.913 5 C -0.240 4.240 6 N -0.584 5.584 7 Si 0.778 3.222 8 H -0.218 1.218 9 H -0.220 1.220 10 H -0.195 1.195 11 C 0.035 3.965 12 C -0.129 4.129 13 H 0.074 0.926 14 C -0.152 4.152 15 C -0.007 4.007 16 N -0.341 5.341 17 C 0.383 3.617 18 O -0.469 6.469 19 C -0.198 4.198 20 C -0.243 4.243 21 C -0.123 4.123 22 N -0.080 5.080 23 H 0.316 0.684 24 N -0.098 5.098 25 C 0.012 3.988 26 H 0.012 0.988 27 H 0.041 0.959 28 H 0.047 0.953 29 H 0.054 0.946 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.111 0.889 33 H 0.126 0.874 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.173 0.827 37 H 0.254 0.746 38 H 0.048 0.952 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.089 -20.082 -9.258 24.738 hybrid contribution 0.398 2.002 -0.926 2.241 sum 11.488 -18.080 -10.184 23.719 Atomic orbital electron populations 1.20571 0.82714 0.95895 0.97169 1.44191 1.02213 1.01773 1.86320 1.19356 0.98937 0.87411 1.32084 0.91347 1.25721 0.97294 1.01434 0.99586 1.70224 1.12432 1.28067 1.47699 0.85616 0.78007 0.80537 0.78068 1.21784 1.22025 1.19470 1.21001 0.96221 0.86818 0.92468 1.22929 0.96154 0.94462 0.99325 0.92605 1.22756 0.99584 0.96611 0.96259 1.22188 1.01489 0.79614 0.97370 1.48646 1.56002 1.10187 1.19307 1.17223 0.77615 0.86520 0.80305 1.90774 1.60879 1.17404 1.77799 1.21616 1.08847 0.90623 0.98690 1.22038 1.05707 1.01215 0.95343 1.23523 1.02957 0.86031 0.99814 1.43554 1.40225 1.11482 1.12782 0.68418 1.73564 1.16185 1.09341 1.10758 1.21969 0.95034 0.93826 0.87951 0.98826 0.95858 0.95282 0.94604 0.92842 0.90819 0.88884 0.87398 0.90728 0.89855 0.82694 0.74589 0.95166 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.17 8.99 127.77 1.15 10.32 16 2 N -0.62 -31.30 2.90 -726.94 -2.11 -33.41 16 3 C -0.25 -13.92 8.85 84.03 0.74 -13.17 16 4 H 0.07 3.76 7.83 -2.91 -0.02 3.73 16 5 C -0.05 -2.69 5.38 84.86 0.46 -2.23 16 6 N -0.94 -57.96 10.13 21.65 0.22 -57.74 16 7 Si 0.95 48.69 29.56 68.60 2.03 50.72 16 8 H -0.29 -15.33 7.11 99.48 0.71 -14.63 16 9 H -0.29 -15.15 7.11 99.48 0.71 -14.44 16 10 H -0.27 -13.00 7.11 99.48 0.71 -12.29 16 11 C 0.16 6.17 5.24 86.38 0.45 6.62 16 12 C -0.11 -3.84 3.27 -9.40 -0.03 -3.87 16 13 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 14 C -0.11 -2.77 6.42 31.80 0.20 -2.56 16 15 C 0.12 3.09 5.55 86.74 0.48 3.57 16 16 N -0.61 -22.93 3.33 -815.27 -2.71 -25.64 16 17 C 0.59 24.21 7.86 86.75 0.68 24.90 16 18 O -0.59 -29.50 17.18 -3.95 -0.07 -29.57 16 19 C -0.04 -1.19 6.98 42.46 0.30 -0.89 16 20 C -0.21 -5.14 10.81 22.41 0.24 -4.90 16 21 C 0.02 0.26 12.02 83.54 1.00 1.27 16 22 N -0.36 -4.55 6.83 -57.51 -0.39 -4.94 16 23 H 0.47 1.38 8.96 -220.00 -1.97 -0.59 16 24 N -0.26 -5.93 9.75 -48.17 -0.47 -6.40 16 25 C 0.13 5.80 5.52 86.85 0.48 6.28 16 26 H -0.01 -0.37 7.43 -2.39 -0.02 -0.39 16 27 H 0.02 1.28 7.04 -2.39 -0.02 1.26 16 28 H 0.03 1.22 7.83 -2.38 -0.02 1.20 16 29 H 0.24 14.91 8.31 -92.71 -0.77 14.14 16 30 H 0.05 1.97 7.93 -2.39 -0.02 1.96 16 31 H 0.07 2.39 7.86 -2.39 -0.02 2.37 16 32 H 0.09 1.96 8.04 -2.38 -0.02 1.94 16 33 H 0.11 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 1.90 7.67 -2.39 -0.02 1.88 16 35 H 0.08 1.97 7.76 -2.39 -0.02 1.95 16 36 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 37 H 0.24 0.26 8.06 -2.91 -0.02 0.24 16 38 H 0.03 1.63 8.04 -2.39 -0.02 1.61 16 39 H 0.06 2.50 7.95 -2.39 -0.02 2.48 16 Total: -1.00 -82.99 322.92 1.74 -81.25 By element: Atomic # 1 Polarization: 1.33 SS G_CDS: -0.92 Total: 0.41 kcal Atomic # 6 Polarization: 19.16 SS G_CDS: 6.16 Total: 25.32 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -5.46 Total: -128.14 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: -0.07 Total: -29.57 kcal Atomic # 14 Polarization: 48.69 SS G_CDS: 2.03 Total: 50.72 kcal Total: -82.99 1.74 -81.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481476982.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.165 kcal (2) G-P(sol) polarization free energy of solvation -82.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds