Wall clock time and date at job start Wed Apr 15 2020 11:43:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 120.00143 * 2 1 4 4 H 1.08003 * 119.99744 * 322.14682 * 3 2 1 5 5 C 1.38804 * 120.00426 * 142.14590 * 3 2 1 6 6 N 1.31625 * 119.99819 * 157.17717 * 5 3 2 7 7 Si 1.86797 * 120.00073 * 337.18128 * 5 3 2 8 8 H 1.48507 * 109.47040 * 95.78045 * 7 5 3 9 9 H 1.48500 * 109.47148 * 215.77693 * 7 5 3 10 10 H 1.48498 * 109.47231 * 335.78225 * 7 5 3 11 11 C 1.46500 * 120.00262 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47460 * 89.99918 * 11 2 1 13 13 H 1.09002 * 110.88613 * 54.29839 * 12 11 2 14 14 C 1.55155 * 111.00523 * 178.18312 * 12 11 2 15 15 C 1.54374 * 102.92453 * 153.54557 * 14 12 11 16 16 N 1.47024 * 107.28433 * 337.86088 * 15 14 12 17 17 C 1.34775 * 125.64788 * 178.87426 * 16 15 14 18 18 O 1.21573 * 119.99962 * 180.02562 * 17 16 15 19 19 C 1.47706 * 119.99893 * 0.03659 * 17 16 15 20 20 C 1.41504 * 126.51432 * 179.97438 * 19 17 16 21 21 C 1.35364 * 105.50011 * 180.02562 * 20 19 17 22 22 N 1.35035 * 107.23192 * 0.02562 * 21 20 19 23 23 H 0.97000 * 124.88431 * 180.02562 * 22 21 20 24 24 N 1.28468 * 110.22877 * 359.71884 * 22 21 20 25 25 C 1.47430 * 108.70448 * 358.90635 * 16 15 14 26 26 H 1.09003 * 109.46794 * 271.73720 * 1 2 3 27 27 H 1.09005 * 109.46798 * 151.74288 * 1 2 3 28 28 H 1.08997 * 109.47352 * 31.74002 * 1 2 3 29 29 H 0.97002 * 119.99821 * 180.02562 * 6 5 3 30 30 H 1.09008 * 109.47007 * 209.99693 * 11 2 1 31 31 H 1.09001 * 109.47035 * 329.99131 * 11 2 1 32 32 H 1.09004 * 110.71991 * 271.93420 * 14 12 11 33 33 H 1.08997 * 110.72326 * 35.21035 * 14 12 11 34 34 H 1.08993 * 109.89906 * 218.42324 * 15 14 12 35 35 H 1.08997 * 109.84267 * 97.26336 * 15 14 12 36 36 H 1.07991 * 127.25326 * 0.02562 * 20 19 17 37 37 H 1.08008 * 126.38891 * 179.97438 * 21 20 19 38 38 H 1.09002 * 110.36575 * 265.29523 * 25 16 15 39 39 H 1.08998 * 110.46305 * 143.01524 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7801 2.0228 -0.5740 5 6 3.3187 1.3125 0.7376 6 7 4.2036 2.2322 0.4158 7 14 3.6361 0.1775 2.1869 8 1 4.4767 -0.9648 1.7463 9 1 4.3414 0.9270 3.2574 10 1 2.3427 -0.3322 2.7090 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7098 -1.4432 13 1 2.9533 -0.9230 -2.0074 14 6 3.2675 -3.0294 -1.4855 15 6 2.8476 -3.6515 -2.8344 16 7 1.5494 -3.0663 -3.2001 17 6 0.8548 -3.3355 -4.3232 18 8 -0.2132 -2.7900 -4.5230 19 6 1.3910 -4.2935 -5.3114 20 6 0.7813 -4.6765 -6.5295 21 6 1.6304 -5.5662 -7.0950 22 7 2.6822 -5.7023 -6.2591 23 1 3.4448 -6.2806 -6.4167 24 7 2.5304 -4.9509 -5.2282 25 6 1.1335 -2.1355 -2.1350 26 1 -0.3633 0.0312 1.0272 27 1 -0.3633 -0.9053 -0.4866 28 1 -0.3634 0.8739 -0.5406 29 1 5.0207 2.3204 0.9311 30 1 3.1500 -1.1385 0.5133 31 1 1.6085 -2.0286 0.5131 32 1 4.3377 -2.8223 -1.4721 33 1 2.9894 -3.6812 -0.6573 34 1 2.7510 -4.7322 -2.7305 35 1 3.5889 -3.4150 -3.5977 36 1 -0.1627 -4.3317 -6.9248 37 1 1.4922 -6.0733 -8.0386 38 1 0.4784 -2.6401 -1.4248 39 1 0.6318 -1.2673 -2.5622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481476983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:12 Heat of formation + Delta-G solvation = 76.067272 kcal Electronic energy + Delta-G solvation = -21854.489217 eV Core-core repulsion = 18607.036240 eV Total energy + Delta-G solvation = -3247.452977 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.79021 -39.61272 -37.49101 -35.47670 -32.42792 -31.73695 -31.27528 -30.69136 -28.84181 -26.85933 -25.59529 -23.96785 -22.29296 -21.84061 -21.01679 -19.98076 -19.25751 -18.40294 -16.92797 -16.76594 -16.06876 -15.72040 -15.13683 -14.95308 -14.32886 -13.86953 -13.70059 -13.56959 -13.28330 -13.01939 -12.87960 -12.43756 -12.34269 -12.16684 -11.73023 -11.45264 -11.11308 -10.85563 -10.76719 -10.69274 -10.22567 -10.19350 -10.00285 -9.75979 -9.60349 -9.49316 -9.41369 -8.49345 -8.38676 -6.77751 -5.97404 -3.38014 1.49387 1.96533 2.62986 3.20125 3.30508 3.47165 3.47866 3.53980 4.29373 4.54040 4.61251 4.80193 4.95843 5.00998 5.26601 5.35108 5.41515 5.45926 5.55728 5.64063 5.76736 5.97332 6.05927 6.14999 6.17676 6.19787 6.30139 6.33474 6.39488 6.55005 6.62947 6.75261 6.77502 6.80239 6.97959 7.59699 7.72737 8.08504 8.30824 8.41658 9.01983 9.73915 10.15390 11.18484 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.004256 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.629029 B = 6577.101313 C = 6978.175584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.121 3.879 2 N -0.612 5.612 3 C -0.268 4.268 4 H 0.078 0.922 5 C 0.036 3.964 6 N -0.900 5.900 7 Si 0.876 3.124 8 H -0.285 1.285 9 H -0.302 1.302 10 H -0.270 1.270 11 C 0.151 3.849 12 C -0.114 4.114 13 H 0.093 0.907 14 C -0.134 4.134 15 C 0.114 3.886 16 N -0.603 5.603 17 C 0.611 3.389 18 O -0.537 6.537 19 C -0.004 4.004 20 C -0.180 4.180 21 C -0.018 4.018 22 N -0.387 5.387 23 H 0.445 0.555 24 N -0.255 5.255 25 C 0.119 3.881 26 H 0.007 0.993 27 H 0.032 0.968 28 H 0.041 0.959 29 H 0.262 0.738 30 H 0.059 0.941 31 H 0.041 0.959 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.163 0.837 37 H 0.184 0.816 38 H 0.064 0.936 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.666 -19.099 -12.242 22.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.024 4.024 2 N -0.336 5.336 3 C -0.396 4.396 4 H 0.096 0.904 5 C -0.165 4.165 6 N -0.541 5.541 7 Si 0.706 3.294 8 H -0.213 1.213 9 H -0.230 1.230 10 H -0.195 1.195 11 C 0.024 3.976 12 C -0.136 4.136 13 H 0.111 0.889 14 C -0.173 4.173 15 C -0.009 4.009 16 N -0.336 5.336 17 C 0.397 3.603 18 O -0.413 6.413 19 C -0.165 4.165 20 C -0.208 4.208 21 C -0.163 4.163 22 N -0.101 5.101 23 H 0.289 0.711 24 N -0.091 5.091 25 C -0.002 4.002 26 H 0.026 0.974 27 H 0.051 0.949 28 H 0.060 0.940 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.180 0.820 37 H 0.201 0.799 38 H 0.082 0.918 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -1.288 -18.817 -11.666 22.177 hybrid contribution 0.166 -0.867 0.108 0.889 sum -1.122 -19.683 -11.559 22.854 Atomic orbital electron populations 1.21152 0.84510 0.99028 0.97697 1.44054 1.00807 1.01941 1.86764 1.18809 1.05890 0.90836 1.24100 0.90411 1.25467 0.96847 0.96446 0.97713 1.69891 1.08501 1.36197 1.39545 0.86939 0.77947 0.80054 0.84443 1.21293 1.22957 1.19459 1.21108 0.96598 0.87827 0.92048 1.23100 0.93960 0.96026 1.00499 0.88866 1.22765 1.01092 0.97491 0.95905 1.22026 0.84526 0.97415 0.96943 1.48435 1.21663 1.43834 1.19692 1.16502 0.83610 0.80656 0.79540 1.90797 1.21690 1.52120 1.76648 1.22012 0.93831 1.02484 0.98209 1.21821 1.02596 1.01169 0.95251 1.22931 0.90249 1.03833 0.99246 1.43432 1.19125 1.33200 1.14366 0.71076 1.73708 1.19378 1.06605 1.09448 1.22401 0.97650 0.92235 0.87903 0.97446 0.94900 0.93982 0.92769 0.92334 0.94044 0.90075 0.90955 0.91478 0.91155 0.81972 0.79887 0.91788 0.89978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.49 10.43 59.84 0.62 3.11 16 2 N -0.61 -14.58 2.42 -181.12 -0.44 -15.02 16 3 C -0.27 -7.51 9.91 -15.06 -0.15 -7.66 16 4 H 0.08 2.37 8.06 -52.48 -0.42 1.95 16 5 C 0.04 1.02 5.29 -17.43 -0.09 0.93 16 6 N -0.90 -27.38 13.97 55.49 0.78 -26.60 16 7 Si 0.88 21.99 25.08 -169.99 -4.26 17.73 16 8 H -0.28 -6.81 6.68 56.52 0.38 -6.43 16 9 H -0.30 -7.71 7.11 56.52 0.40 -7.31 16 10 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 11 C 0.15 3.16 4.02 -4.04 -0.02 3.15 16 12 C -0.11 -2.11 3.27 -88.47 -0.29 -2.40 16 13 H 0.09 1.98 8.14 -51.93 -0.42 1.56 16 14 C -0.13 -1.98 6.42 -24.87 -0.16 -2.14 16 15 C 0.11 1.60 5.54 -3.04 -0.02 1.58 16 16 N -0.60 -9.98 3.33 -171.65 -0.57 -10.56 16 17 C 0.61 10.52 7.86 -12.39 -0.10 10.42 16 18 O -0.54 -10.75 17.18 5.30 0.09 -10.66 16 19 C 0.00 -0.06 6.98 -82.77 -0.58 -0.64 16 20 C -0.18 -2.00 10.81 -39.36 -0.43 -2.43 16 21 C -0.02 -0.13 12.02 -17.17 -0.21 -0.34 16 22 N -0.39 -2.96 6.83 30.47 0.21 -2.76 16 23 H 0.45 1.59 8.96 -190.44 -1.71 -0.12 16 24 N -0.25 -3.01 9.76 33.42 0.33 -2.69 16 25 C 0.12 2.11 4.93 -2.53 -0.01 2.10 16 26 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 27 H 0.03 0.59 6.27 -51.93 -0.33 0.26 16 28 H 0.04 0.86 8.05 -51.93 -0.42 0.44 16 29 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 30 H 0.06 1.35 3.36 -51.92 -0.17 1.17 16 31 H 0.04 0.78 7.97 -51.93 -0.41 0.37 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 34 H 0.07 0.86 7.78 -51.93 -0.40 0.46 16 35 H 0.07 0.98 7.65 -51.93 -0.40 0.58 16 36 H 0.16 1.67 8.06 -52.49 -0.42 1.24 16 37 H 0.18 0.53 8.06 -52.48 -0.42 0.11 16 38 H 0.06 1.08 7.42 -51.93 -0.39 0.70 16 39 H 0.08 1.61 7.99 -51.93 -0.42 1.20 16 LS Contribution 317.35 15.07 4.78 4.78 Total: -1.00 -34.72 317.35 -7.26 -41.98 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -6.75 Total: -1.91 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -1.42 Total: 5.69 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.30 Total: -57.61 kcal Atomic # 8 Polarization: -10.75 SS G_CDS: 0.09 Total: -10.66 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.26 Total: 17.73 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.72 -7.26 -41.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481476983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.049 kcal (2) G-P(sol) polarization free energy of solvation -34.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds