Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36942 * 120.00143 * 2 1 4 4 H 1.08003 * 119.99744 * 322.14682 * 3 2 1 5 5 C 1.38804 * 120.00426 * 142.14590 * 3 2 1 6 6 N 1.31625 * 119.99819 * 157.17717 * 5 3 2 7 7 Si 1.86797 * 120.00073 * 337.18128 * 5 3 2 8 8 H 1.48507 * 109.47040 * 95.78045 * 7 5 3 9 9 H 1.48500 * 109.47148 * 215.77693 * 7 5 3 10 10 H 1.48498 * 109.47231 * 335.78225 * 7 5 3 11 11 C 1.46500 * 120.00262 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47460 * 89.99918 * 11 2 1 13 13 H 1.09002 * 110.88613 * 54.29839 * 12 11 2 14 14 C 1.55155 * 111.00523 * 178.18312 * 12 11 2 15 15 C 1.54374 * 102.92453 * 153.54557 * 14 12 11 16 16 N 1.47024 * 107.28433 * 337.86088 * 15 14 12 17 17 C 1.34775 * 125.64788 * 178.87426 * 16 15 14 18 18 O 1.21573 * 119.99962 * 180.02562 * 17 16 15 19 19 C 1.47706 * 119.99893 * 0.03659 * 17 16 15 20 20 C 1.41504 * 126.51432 * 179.97438 * 19 17 16 21 21 C 1.35364 * 105.50011 * 180.02562 * 20 19 17 22 22 N 1.35035 * 107.23192 * 0.02562 * 21 20 19 23 23 H 0.97000 * 124.88431 * 180.02562 * 22 21 20 24 24 N 1.28468 * 110.22877 * 359.71884 * 22 21 20 25 25 C 1.47430 * 108.70448 * 358.90635 * 16 15 14 26 26 H 1.09003 * 109.46794 * 271.73720 * 1 2 3 27 27 H 1.09005 * 109.46798 * 151.74288 * 1 2 3 28 28 H 1.08997 * 109.47352 * 31.74002 * 1 2 3 29 29 H 0.97002 * 119.99821 * 180.02562 * 6 5 3 30 30 H 1.09008 * 109.47007 * 209.99693 * 11 2 1 31 31 H 1.09001 * 109.47035 * 329.99131 * 11 2 1 32 32 H 1.09004 * 110.71991 * 271.93420 * 14 12 11 33 33 H 1.08997 * 110.72326 * 35.21035 * 14 12 11 34 34 H 1.08993 * 109.89906 * 218.42324 * 15 14 12 35 35 H 1.08997 * 109.84267 * 97.26336 * 15 14 12 36 36 H 1.07991 * 127.25326 * 0.02562 * 20 19 17 37 37 H 1.08008 * 126.38891 * 179.97438 * 21 20 19 38 38 H 1.09002 * 110.36575 * 265.29523 * 25 16 15 39 39 H 1.08998 * 110.46305 * 143.01524 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 1.7801 2.0228 -0.5740 5 6 3.3187 1.3125 0.7376 6 7 4.2036 2.2322 0.4158 7 14 3.6361 0.1775 2.1869 8 1 4.4767 -0.9648 1.7463 9 1 4.3414 0.9270 3.2574 10 1 2.3427 -0.3322 2.7090 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7098 -1.4432 13 1 2.9533 -0.9230 -2.0074 14 6 3.2675 -3.0294 -1.4855 15 6 2.8476 -3.6515 -2.8344 16 7 1.5494 -3.0663 -3.2001 17 6 0.8548 -3.3355 -4.3232 18 8 -0.2132 -2.7900 -4.5230 19 6 1.3910 -4.2935 -5.3114 20 6 0.7813 -4.6765 -6.5295 21 6 1.6304 -5.5662 -7.0950 22 7 2.6822 -5.7023 -6.2591 23 1 3.4448 -6.2806 -6.4167 24 7 2.5304 -4.9509 -5.2282 25 6 1.1335 -2.1355 -2.1350 26 1 -0.3633 0.0312 1.0272 27 1 -0.3633 -0.9053 -0.4866 28 1 -0.3634 0.8739 -0.5406 29 1 5.0207 2.3204 0.9311 30 1 3.1500 -1.1385 0.5133 31 1 1.6085 -2.0286 0.5131 32 1 4.3377 -2.8223 -1.4721 33 1 2.9894 -3.6812 -0.6573 34 1 2.7510 -4.7322 -2.7305 35 1 3.5889 -3.4150 -3.5977 36 1 -0.1627 -4.3317 -6.9248 37 1 1.4922 -6.0733 -8.0386 38 1 0.4784 -2.6401 -1.4248 39 1 0.6318 -1.2673 -2.5622 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481476983.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = 50.590401 kcal Electronic energy + Delta-G solvation = -21855.593977 eV Core-core repulsion = 18607.036240 eV Total energy + Delta-G solvation = -3248.557737 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.57048 -40.93022 -38.95432 -37.19994 -33.99960 -33.27545 -32.47556 -31.57438 -30.18691 -28.51147 -27.36760 -25.30522 -23.44473 -22.84820 -22.57763 -21.47653 -20.29348 -19.21417 -18.74451 -18.08224 -17.54778 -16.99057 -16.64970 -16.24453 -15.83141 -15.28379 -15.04349 -14.80349 -14.61004 -14.45838 -14.17998 -13.95635 -13.83839 -13.70602 -13.42973 -12.89869 -12.66254 -12.49538 -12.34776 -12.01024 -11.90195 -11.74084 -11.55446 -11.37649 -11.28033 -10.61282 -10.45595 -10.15057 -9.68410 -8.75337 -8.18679 -5.57487 0.50611 1.24123 1.31974 1.44727 1.56537 1.78357 2.24679 2.31322 2.44070 3.02762 3.30244 3.43157 3.69987 3.72135 3.98672 4.07132 4.20879 4.30451 4.43741 4.53960 4.63761 4.69484 4.77150 4.78092 4.80071 4.87833 4.88588 4.98410 5.04095 5.11370 5.20706 5.23653 5.38250 5.44839 5.95622 6.17142 6.19016 6.44546 6.81571 7.00133 7.07430 7.63772 8.05800 9.01580 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030842 B = 0.004256 C = 0.004012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.629029 B = 6577.101313 C = 6978.175584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.625 5.625 3 C -0.265 4.265 4 H 0.033 0.967 5 C -0.018 4.018 6 N -0.949 5.949 7 Si 0.946 3.054 8 H -0.261 1.261 9 H -0.309 1.309 10 H -0.260 1.260 11 C 0.147 3.853 12 C -0.110 4.110 13 H 0.054 0.946 14 C -0.124 4.124 15 C 0.121 3.879 16 N -0.608 5.608 17 C 0.602 3.398 18 O -0.580 6.580 19 C -0.040 4.040 20 C -0.211 4.211 21 C 0.018 3.982 22 N -0.365 5.365 23 H 0.465 0.535 24 N -0.266 5.266 25 C 0.127 3.873 26 H 0.018 0.982 27 H 0.059 0.941 28 H 0.031 0.969 29 H 0.264 0.736 30 H 0.043 0.957 31 H 0.073 0.927 32 H 0.089 0.911 33 H 0.096 0.904 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.160 0.840 37 H 0.236 0.764 38 H 0.078 0.922 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.024 -23.280 -12.575 26.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.349 5.349 3 C -0.395 4.395 4 H 0.051 0.949 5 C -0.215 4.215 6 N -0.593 5.593 7 Si 0.773 3.227 8 H -0.187 1.187 9 H -0.238 1.238 10 H -0.184 1.184 11 C 0.022 3.978 12 C -0.132 4.132 13 H 0.072 0.928 14 C -0.163 4.163 15 C -0.001 4.001 16 N -0.340 5.340 17 C 0.391 3.609 18 O -0.459 6.459 19 C -0.199 4.199 20 C -0.239 4.239 21 C -0.127 4.127 22 N -0.083 5.083 23 H 0.314 0.686 24 N -0.104 5.104 25 C 0.004 3.996 26 H 0.036 0.964 27 H 0.078 0.922 28 H 0.049 0.951 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.178 0.822 37 H 0.252 0.748 38 H 0.096 0.904 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.629 -23.054 -12.002 25.998 hybrid contribution -0.054 0.424 0.040 0.430 sum -0.683 -22.629 -11.962 25.606 Atomic orbital electron populations 1.21212 0.82703 0.99967 0.98402 1.44171 1.02082 1.01626 1.87035 1.18649 1.06147 0.91570 1.23158 0.94945 1.26096 0.96561 0.98684 1.00139 1.70026 1.09332 1.39033 1.40938 0.85817 0.78380 0.78525 0.79949 1.18738 1.23761 1.18422 1.21225 0.95999 0.87111 0.93509 1.22820 0.94918 0.96975 0.98460 0.92760 1.22781 1.00987 0.95336 0.97160 1.22088 0.83233 0.98312 0.96456 1.48519 1.22487 1.43535 1.19447 1.17056 0.83181 0.80756 0.79899 1.90750 1.23587 1.53951 1.77607 1.21681 0.95614 1.03740 0.98890 1.22041 1.03752 1.03022 0.95058 1.23556 0.88039 1.01347 0.99714 1.43569 1.19723 1.31825 1.13150 0.68597 1.73591 1.18513 1.07169 1.11125 1.22187 0.97158 0.91779 0.88429 0.96392 0.92223 0.95055 0.92742 0.93876 0.90854 0.89206 0.88539 0.89369 0.91067 0.82217 0.74792 0.90393 0.93035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.95 10.43 127.77 1.33 6.28 16 2 N -0.62 -29.85 2.42 -726.94 -1.76 -31.61 16 3 C -0.27 -15.44 9.91 84.03 0.83 -14.60 16 4 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 5 C -0.02 -1.07 5.29 84.86 0.45 -0.62 16 6 N -0.95 -59.73 13.97 21.65 0.30 -59.43 16 7 Si 0.95 45.36 25.08 68.60 1.72 47.08 16 8 H -0.26 -11.43 6.68 99.48 0.66 -10.77 16 9 H -0.31 -15.10 7.11 99.48 0.71 -14.39 16 10 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 11 C 0.15 5.94 4.02 86.38 0.35 6.29 16 12 C -0.11 -4.01 3.27 -9.40 -0.03 -4.04 16 13 H 0.05 2.39 8.14 -2.39 -0.02 2.37 16 14 C -0.12 -3.35 6.42 31.80 0.20 -3.15 16 15 C 0.12 3.16 5.54 86.75 0.48 3.64 16 16 N -0.61 -19.91 3.33 -815.24 -2.71 -22.62 16 17 C 0.60 21.05 7.86 86.75 0.68 21.73 16 18 O -0.58 -24.19 17.18 -3.95 -0.07 -24.26 16 19 C -0.04 -1.09 6.98 42.46 0.30 -0.80 16 20 C -0.21 -4.34 10.81 22.41 0.24 -4.10 16 21 C 0.02 0.19 12.02 83.54 1.00 1.19 16 22 N -0.37 -4.18 6.83 -57.50 -0.39 -4.57 16 23 H 0.47 1.20 8.96 -219.99 -1.97 -0.77 16 24 N -0.27 -5.64 9.76 -48.18 -0.47 -6.11 16 25 C 0.13 4.47 4.93 86.85 0.43 4.89 16 26 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 27 H 0.06 2.08 6.27 -2.38 -0.01 2.07 16 28 H 0.03 1.31 8.05 -2.39 -0.02 1.29 16 29 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 30 H 0.04 1.89 3.36 -2.38 -0.01 1.88 16 31 H 0.07 2.51 7.97 -2.39 -0.02 2.49 16 32 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.10 2.19 8.04 -2.39 -0.02 2.17 16 34 H 0.09 1.98 7.78 -2.39 -0.02 1.96 16 35 H 0.07 1.86 7.65 -2.39 -0.02 1.84 16 36 H 0.16 3.23 8.06 -2.92 -0.02 3.21 16 37 H 0.24 -0.08 8.06 -2.91 -0.02 -0.11 16 38 H 0.08 2.52 7.42 -2.39 -0.02 2.50 16 39 H 0.05 2.11 7.99 -2.39 -0.02 2.09 16 Total: -1.00 -80.28 317.35 1.95 -78.33 By element: Atomic # 1 Polarization: 7.42 SS G_CDS: -0.95 Total: 6.47 kcal Atomic # 6 Polarization: 10.44 SS G_CDS: 6.27 Total: 16.71 kcal Atomic # 7 Polarization: -119.30 SS G_CDS: -5.03 Total: -124.33 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -0.07 Total: -24.26 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 1.72 Total: 47.08 kcal Total: -80.28 1.95 -78.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481476983.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.922 kcal (2) G-P(sol) polarization free energy of solvation -80.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds