Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36937 * 119.99728 * 2 1 4 4 H 1.08005 * 119.99978 * 204.56386 * 3 2 1 5 5 C 1.38816 * 120.00309 * 24.57140 * 3 2 1 6 6 N 1.31624 * 119.99403 * 10.74387 * 5 3 2 7 7 Si 1.86792 * 120.00087 * 190.74937 * 5 3 2 8 8 H 1.48496 * 109.47520 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47335 * 119.99867 * 7 5 3 10 10 H 1.48505 * 109.46864 * 239.99518 * 7 5 3 11 11 C 1.46494 * 120.00251 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47106 * 89.99835 * 11 2 1 13 13 C 1.53003 * 109.47096 * 180.02562 * 12 11 2 14 14 N 1.46493 * 109.47109 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00233 * 270.00285 * 14 13 12 16 16 C 1.34780 * 119.99929 * 90.00210 * 14 13 12 17 17 O 1.21515 * 119.99950 * 4.75629 * 16 14 13 18 18 C 1.48130 * 120.00228 * 184.75958 * 16 14 13 19 19 C 1.40117 * 121.14358 * 321.82504 * 18 16 14 20 20 C 1.38501 * 117.82339 * 179.97438 * 19 18 16 21 21 N 1.31923 * 119.96741 * 0.02562 * 20 19 18 22 22 N 1.28274 * 122.51769 * 359.97438 * 21 20 19 23 23 C 1.31925 * 122.32655 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.46780 * 266.92009 * 1 2 3 25 25 H 1.08997 * 109.47283 * 26.91855 * 1 2 3 26 26 H 1.08994 * 109.46578 * 146.92466 * 1 2 3 27 27 H 0.97000 * 119.99511 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47186 * 330.00024 * 11 2 1 29 29 H 1.09002 * 109.47487 * 209.99683 * 11 2 1 30 30 H 1.08996 * 109.46943 * 60.00040 * 12 11 2 31 31 H 1.08996 * 109.46947 * 299.99812 * 12 11 2 32 32 H 1.09003 * 109.47033 * 59.99832 * 13 12 11 33 33 H 1.08996 * 109.46860 * 300.00226 * 13 12 11 34 34 H 1.09001 * 109.46807 * 265.64684 * 15 14 13 35 35 H 1.08996 * 109.46886 * 25.64314 * 15 14 13 36 36 H 1.09001 * 109.47329 * 145.64966 * 15 14 13 37 37 H 1.07999 * 121.08668 * 359.95714 * 19 18 16 38 38 H 1.07997 * 120.01926 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.17161 * 180.26948 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1564 1.2283 -0.3888 5 6 1.5499 2.3337 0.4999 6 7 0.4161 2.2482 1.1630 7 14 2.3517 3.9993 0.2314 8 1 3.6100 3.8248 -0.5376 9 1 1.4255 4.8781 -0.5270 10 1 2.6573 4.6192 1.5458 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 6 3.2171 -3.0350 -1.4439 14 7 3.4607 -3.4576 -2.8252 15 6 2.4835 -4.3028 -3.5159 16 6 4.5838 -3.0688 -3.4608 17 8 5.4344 -2.4408 -2.8619 18 6 4.7814 -3.4069 -4.8894 19 6 4.3736 -4.6447 -5.4042 20 6 4.5913 -4.8884 -6.7501 21 7 5.1661 -3.9691 -7.5017 22 7 5.5416 -2.8341 -7.0367 23 6 5.3807 -2.5026 -5.7700 24 1 -0.3633 -0.0552 1.0262 25 1 -0.3634 0.9163 -0.4652 26 1 -0.3632 -0.8611 -0.5608 27 1 -0.0032 3.0503 1.5120 28 1 1.6086 -2.0285 0.5129 29 1 3.1500 -1.1385 0.5133 30 1 3.0416 -0.9498 -1.9568 31 1 1.5002 -1.8399 -1.9571 32 1 2.6276 -3.7947 -0.9305 33 1 4.1694 -2.9053 -0.9299 34 1 2.7690 -5.3494 -3.4097 35 1 1.4970 -4.1492 -3.0787 36 1 2.4576 -4.0388 -4.5731 37 1 3.9053 -5.3846 -4.7721 38 1 4.2913 -5.8308 -7.1840 39 1 5.7061 -1.5354 -5.4165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001502377476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 59.858787 kcal Electronic energy + Delta-G solvation = -21182.303538 eV Core-core repulsion = 17934.147708 eV Total energy + Delta-G solvation = -3248.155830 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.59315 -39.77321 -36.48631 -35.56524 -33.91688 -32.87595 -32.15885 -30.20281 -27.46376 -26.59539 -25.80875 -24.87945 -24.57840 -22.33845 -20.32591 -20.07341 -18.18416 -17.58865 -17.14989 -16.70222 -16.25609 -15.63424 -15.37457 -15.01646 -14.74873 -14.27747 -14.12111 -13.74959 -13.35066 -13.26285 -12.92455 -12.67408 -12.50121 -11.82076 -11.38503 -11.32942 -11.01723 -10.83795 -10.79060 -10.65086 -10.53881 -10.45255 -10.41397 -10.17298 -9.89768 -9.84843 -9.75238 -8.90548 -8.49113 -6.69893 -5.72802 -3.18619 0.03319 0.48852 2.36224 2.66338 3.21812 3.39344 3.46778 3.49934 3.72932 3.86029 4.08007 4.11958 4.34896 4.51987 4.73897 4.94786 4.99992 5.06917 5.20204 5.28583 5.37189 5.45103 5.45682 5.69270 5.71028 5.91213 5.99741 6.04453 6.40365 6.46074 6.75411 6.77305 6.98028 7.06647 7.38994 7.69395 7.81479 7.83987 8.27943 8.43960 9.26481 9.89107 10.38418 11.33976 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.003672 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.448752 B = 7623.984673 C = 8311.822990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.164 3.836 2 N -0.603 5.603 3 C -0.253 4.253 4 H 0.068 0.932 5 C 0.001 3.999 6 N -0.910 5.910 7 Si 0.904 3.096 8 H -0.277 1.277 9 H -0.289 1.289 10 H -0.290 1.290 11 C 0.155 3.845 12 C -0.152 4.152 13 C 0.115 3.885 14 N -0.602 5.602 15 C 0.068 3.932 16 C 0.557 3.443 17 O -0.513 6.513 18 C -0.120 4.120 19 C -0.095 4.095 20 C 0.035 3.965 21 N -0.232 5.232 22 N -0.241 5.241 23 C 0.092 3.908 24 H 0.018 0.982 25 H 0.054 0.946 26 H -0.009 1.009 27 H 0.252 0.748 28 H 0.035 0.965 29 H 0.048 0.952 30 H 0.064 0.936 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.163 0.837 38 H 0.179 0.821 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.657 -18.392 -11.769 22.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.325 5.325 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.197 4.197 6 N -0.555 5.555 7 Si 0.734 3.266 8 H -0.202 1.202 9 H -0.216 1.216 10 H -0.216 1.216 11 C 0.027 3.973 12 C -0.194 4.194 13 C -0.007 4.007 14 N -0.335 5.335 15 C -0.075 4.075 16 C 0.343 3.657 17 O -0.388 6.388 18 C -0.135 4.135 19 C -0.124 4.124 20 C -0.128 4.128 21 N -0.075 5.075 22 N -0.082 5.082 23 C -0.073 4.073 24 H 0.037 0.963 25 H 0.073 0.927 26 H 0.010 0.990 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.180 0.820 38 H 0.196 0.804 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 4.541 -17.457 -12.844 22.144 hybrid contribution -0.377 0.458 1.304 1.433 sum 4.164 -16.999 -11.540 20.964 Atomic orbital electron populations 1.20756 0.82772 0.96809 0.97751 1.43876 1.01797 1.00719 1.86114 1.19266 0.99103 0.85959 1.33954 0.91427 1.25058 0.97873 0.98704 0.98069 1.70073 1.19175 1.27350 1.38926 0.86187 0.78766 0.84209 0.77458 1.20215 1.21628 1.21649 1.20611 0.96199 0.88519 0.91981 1.22639 0.99268 0.95081 1.02375 1.21734 1.01874 0.97373 0.79711 1.47840 1.19868 1.50532 1.15252 1.22180 0.93530 0.93826 0.97970 1.17982 0.82401 0.80034 0.85289 1.90859 1.42313 1.39121 1.66556 1.21289 0.99745 0.96285 0.96172 1.23014 0.95598 0.96785 0.97052 1.24354 0.96116 1.00746 0.91633 1.72894 1.05679 0.97046 1.31841 1.73155 1.12734 1.09990 1.12303 1.24583 0.91983 1.00655 0.90050 0.96322 0.92691 0.99029 0.93824 0.94686 0.93331 0.91760 0.92777 0.90354 0.89485 0.92023 0.89884 0.91111 0.82013 0.80408 0.80040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 8.99 59.85 0.54 4.59 16 2 N -0.60 -15.33 2.92 -181.12 -0.53 -15.86 16 3 C -0.25 -7.12 9.65 -15.06 -0.15 -7.26 16 4 H 0.07 1.89 7.85 -52.48 -0.41 1.48 16 5 C 0.00 0.02 5.09 -17.43 -0.09 -0.06 16 6 N -0.91 -26.88 10.73 55.49 0.60 -26.29 16 7 Si 0.90 22.32 29.57 -169.99 -5.03 17.29 16 8 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 9 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 10 H -0.29 -7.17 7.11 56.52 0.40 -6.76 16 11 C 0.16 3.12 5.68 -4.04 -0.02 3.10 16 12 C -0.15 -2.58 5.86 -26.73 -0.16 -2.73 16 13 C 0.11 1.48 5.42 -4.04 -0.02 1.46 16 14 N -0.60 -6.79 2.87 -182.59 -0.52 -7.31 16 15 C 0.07 0.47 8.89 59.85 0.53 1.00 16 16 C 0.56 7.31 7.42 -12.20 -0.09 7.22 16 17 O -0.51 -8.80 16.50 5.35 0.09 -8.71 16 18 C -0.12 -1.28 5.28 -104.57 -0.55 -1.83 16 19 C -0.09 -0.68 7.75 -38.78 -0.30 -0.98 16 20 C 0.04 0.26 11.30 -17.42 -0.20 0.06 16 21 N -0.23 -2.60 11.48 30.53 0.35 -2.25 16 22 N -0.24 -3.03 11.49 30.78 0.35 -2.67 16 23 C 0.09 1.07 10.97 -16.96 -0.19 0.88 16 24 H 0.02 0.49 7.77 -51.93 -0.40 0.08 16 25 H 0.05 1.48 6.83 -51.93 -0.35 1.13 16 26 H -0.01 -0.19 8.09 -51.93 -0.42 -0.61 16 27 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 28 H 0.03 0.64 8.07 -51.93 -0.42 0.22 16 29 H 0.05 1.00 8.04 -51.93 -0.42 0.58 16 30 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.08 0.81 8.07 -51.93 -0.42 0.39 16 33 H 0.09 1.25 7.36 -51.93 -0.38 0.86 16 34 H 0.06 0.26 6.96 -51.93 -0.36 -0.10 16 35 H 0.08 0.55 8.04 -51.93 -0.42 0.14 16 36 H 0.07 0.45 5.78 -51.93 -0.30 0.15 16 37 H 0.16 0.65 5.41 -52.49 -0.28 0.37 16 38 H 0.18 0.59 8.06 -52.49 -0.42 0.17 16 39 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -34.79 328.18 -5.86 -40.65 By element: Atomic # 1 Polarization: 0.19 SS G_CDS: -5.42 Total: -5.23 kcal Atomic # 6 Polarization: 6.14 SS G_CDS: -0.69 Total: 5.44 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: 0.25 Total: -54.39 kcal Atomic # 8 Polarization: -8.80 SS G_CDS: 0.09 Total: -8.71 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.03 Total: 17.29 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.79 -5.86 -40.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502377476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.506 kcal (2) G-P(sol) polarization free energy of solvation -34.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.647 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds