Wall clock time and date at job start Wed Apr 15 2020 11:43:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36937 * 119.99728 * 2 1 4 4 H 1.08005 * 119.99978 * 204.56386 * 3 2 1 5 5 C 1.38816 * 120.00309 * 24.57140 * 3 2 1 6 6 N 1.31624 * 119.99403 * 10.74387 * 5 3 2 7 7 Si 1.86792 * 120.00087 * 190.74937 * 5 3 2 8 8 H 1.48496 * 109.47520 * 359.97438 * 7 5 3 9 9 H 1.48504 * 109.47335 * 119.99867 * 7 5 3 10 10 H 1.48505 * 109.46864 * 239.99518 * 7 5 3 11 11 C 1.46494 * 120.00251 * 180.02562 * 2 1 3 12 12 C 1.53005 * 109.47106 * 89.99835 * 11 2 1 13 13 C 1.53003 * 109.47096 * 180.02562 * 12 11 2 14 14 N 1.46493 * 109.47109 * 179.97438 * 13 12 11 15 15 C 1.46501 * 120.00233 * 270.00285 * 14 13 12 16 16 C 1.34780 * 119.99929 * 90.00210 * 14 13 12 17 17 O 1.21515 * 119.99950 * 4.75629 * 16 14 13 18 18 C 1.48130 * 120.00228 * 184.75958 * 16 14 13 19 19 C 1.40117 * 121.14358 * 321.82504 * 18 16 14 20 20 C 1.38501 * 117.82339 * 179.97438 * 19 18 16 21 21 N 1.31923 * 119.96741 * 0.02562 * 20 19 18 22 22 N 1.28274 * 122.51769 * 359.97438 * 21 20 19 23 23 C 1.31925 * 122.32655 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.46780 * 266.92009 * 1 2 3 25 25 H 1.08997 * 109.47283 * 26.91855 * 1 2 3 26 26 H 1.08994 * 109.46578 * 146.92466 * 1 2 3 27 27 H 0.97000 * 119.99511 * 180.02562 * 6 5 3 28 28 H 1.08996 * 109.47186 * 330.00024 * 11 2 1 29 29 H 1.09002 * 109.47487 * 209.99683 * 11 2 1 30 30 H 1.08996 * 109.46943 * 60.00040 * 12 11 2 31 31 H 1.08996 * 109.46947 * 299.99812 * 12 11 2 32 32 H 1.09003 * 109.47033 * 59.99832 * 13 12 11 33 33 H 1.08996 * 109.46860 * 300.00226 * 13 12 11 34 34 H 1.09001 * 109.46807 * 265.64684 * 15 14 13 35 35 H 1.08996 * 109.46886 * 25.64314 * 15 14 13 36 36 H 1.09001 * 109.47329 * 145.64966 * 15 14 13 37 37 H 1.07999 * 121.08668 * 359.95714 * 19 18 16 38 38 H 1.07997 * 120.01926 * 179.97438 * 20 19 18 39 39 H 1.07996 * 120.17161 * 180.26948 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1564 1.2283 -0.3888 5 6 1.5499 2.3337 0.4999 6 7 0.4161 2.2482 1.1630 7 14 2.3517 3.9993 0.2314 8 1 3.6100 3.8248 -0.5376 9 1 1.4255 4.8781 -0.5270 10 1 2.6573 4.6192 1.5458 11 6 2.1976 -1.2686 -0.0006 12 6 2.4526 -1.7097 -1.4433 13 6 3.2171 -3.0350 -1.4439 14 7 3.4607 -3.4576 -2.8252 15 6 2.4835 -4.3028 -3.5159 16 6 4.5838 -3.0688 -3.4608 17 8 5.4344 -2.4408 -2.8619 18 6 4.7814 -3.4069 -4.8894 19 6 4.3736 -4.6447 -5.4042 20 6 4.5913 -4.8884 -6.7501 21 7 5.1661 -3.9691 -7.5017 22 7 5.5416 -2.8341 -7.0367 23 6 5.3807 -2.5026 -5.7700 24 1 -0.3633 -0.0552 1.0262 25 1 -0.3634 0.9163 -0.4652 26 1 -0.3632 -0.8611 -0.5608 27 1 -0.0032 3.0503 1.5120 28 1 1.6086 -2.0285 0.5129 29 1 3.1500 -1.1385 0.5133 30 1 3.0416 -0.9498 -1.9568 31 1 1.5002 -1.8399 -1.9571 32 1 2.6276 -3.7947 -0.9305 33 1 4.1694 -2.9053 -0.9299 34 1 2.7690 -5.3494 -3.4097 35 1 1.4970 -4.1492 -3.0787 36 1 2.4576 -4.0388 -4.5731 37 1 3.9053 -5.3846 -4.7721 38 1 4.2913 -5.8308 -7.1840 39 1 5.7061 -1.5354 -5.4165 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502377476.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:13 Heat of formation + Delta-G solvation = 35.539693 kcal Electronic energy + Delta-G solvation = -21183.358093 eV Core-core repulsion = 17934.147708 eV Total energy + Delta-G solvation = -3249.210385 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.37861 -40.72187 -37.98393 -36.92685 -34.92141 -33.76169 -33.62275 -31.86120 -28.27445 -27.99058 -27.64062 -25.76912 -25.58862 -23.81125 -22.02531 -21.02554 -19.02170 -18.70708 -18.42992 -17.88530 -17.31572 -16.82416 -16.53621 -16.11918 -15.81544 -15.72945 -15.31131 -14.83489 -14.69173 -14.55331 -14.39736 -13.98382 -13.38344 -13.12343 -12.99180 -12.78953 -12.58147 -12.51813 -12.27521 -12.11982 -12.08289 -11.90706 -11.62388 -11.42725 -11.26640 -11.20983 -10.71545 -10.65053 -9.83262 -8.74758 -7.88319 -5.36023 -0.71297 -0.20184 1.40591 1.42038 1.43370 1.54023 1.79946 2.46067 2.47747 3.01385 3.10162 3.26695 3.35634 3.52735 3.69000 3.75460 4.04912 4.17947 4.32947 4.36660 4.44511 4.51388 4.55823 4.65388 4.73511 4.75996 4.86720 4.88835 4.92620 5.08268 5.24202 5.25549 5.42362 5.53349 5.59157 5.68779 6.16654 6.32743 6.86963 7.14006 7.53472 7.86739 8.28498 9.16260 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023088 B = 0.003672 C = 0.003368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.448752 B = 7623.984673 C = 8311.822990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.177 3.823 2 N -0.623 5.623 3 C -0.263 4.263 4 H 0.059 0.941 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.965 3.035 8 H -0.273 1.273 9 H -0.287 1.287 10 H -0.288 1.288 11 C 0.151 3.849 12 C -0.133 4.133 13 C 0.124 3.876 14 N -0.598 5.598 15 C 0.056 3.944 16 C 0.554 3.446 17 O -0.569 6.569 18 C -0.136 4.136 19 C -0.066 4.066 20 C 0.049 3.951 21 N -0.263 5.263 22 N -0.272 5.272 23 C 0.077 3.923 24 H -0.003 1.003 25 H 0.024 0.976 26 H 0.031 0.969 27 H 0.249 0.751 28 H 0.063 0.937 29 H 0.035 0.965 30 H 0.023 0.977 31 H 0.061 0.939 32 H 0.118 0.882 33 H 0.068 0.932 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.078 0.922 37 H 0.205 0.795 38 H 0.227 0.773 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.771 -21.569 -12.687 25.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 N -0.346 5.346 3 C -0.394 4.394 4 H 0.077 0.923 5 C -0.246 4.246 6 N -0.584 5.584 7 Si 0.793 3.207 8 H -0.198 1.198 9 H -0.214 1.214 10 H -0.214 1.214 11 C 0.025 3.975 12 C -0.174 4.174 13 C 0.001 3.999 14 N -0.329 5.329 15 C -0.085 4.085 16 C 0.341 3.659 17 O -0.448 6.448 18 C -0.150 4.150 19 C -0.095 4.095 20 C -0.116 4.116 21 N -0.104 5.104 22 N -0.112 5.112 23 C -0.088 4.088 24 H 0.016 0.984 25 H 0.043 0.957 26 H 0.049 0.951 27 H 0.059 0.941 28 H 0.081 0.919 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.087 0.913 34 H 0.121 0.879 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.221 0.779 38 H 0.244 0.756 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 3.647 -20.681 -13.805 25.131 hybrid contribution -0.147 1.295 1.566 2.037 sum 3.500 -19.386 -12.239 23.192 Atomic orbital electron populations 1.20526 0.82604 0.96940 0.96712 1.44150 1.02288 1.01753 1.86449 1.19468 0.98974 0.87570 1.33343 0.92307 1.25761 0.98635 1.01821 0.98338 1.70208 1.20317 1.27887 1.39968 0.85241 0.77969 0.80246 0.77249 1.19789 1.21380 1.21430 1.20803 0.95459 0.87116 0.94122 1.22314 0.99460 0.96211 0.99394 1.21533 1.00923 0.96269 0.81179 1.47898 1.20016 1.50289 1.14701 1.22585 0.92838 0.95085 0.98000 1.18371 0.82270 0.79183 0.86077 1.90828 1.44401 1.41688 1.67886 1.21097 1.01398 0.97940 0.94572 1.23469 0.93198 0.95508 0.97326 1.25107 0.93806 1.01208 0.91444 1.72787 1.06998 0.97438 1.33158 1.73113 1.14209 1.11344 1.12548 1.24505 0.92895 1.00968 0.90437 0.98439 0.95715 0.95062 0.94127 0.91887 0.94626 0.95801 0.92011 0.86367 0.91338 0.87949 0.88984 0.90326 0.77855 0.75647 0.81167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.73 8.99 127.77 1.15 9.88 16 2 N -0.62 -31.83 2.92 -726.93 -2.12 -33.95 16 3 C -0.26 -15.09 9.65 84.03 0.81 -14.28 16 4 H 0.06 3.40 7.85 -2.91 -0.02 3.38 16 5 C -0.05 -2.92 5.09 84.86 0.43 -2.49 16 6 N -0.94 -56.35 10.73 21.65 0.23 -56.12 16 7 Si 0.96 46.75 29.57 68.60 2.03 48.78 16 8 H -0.27 -12.90 7.11 99.48 0.71 -12.20 16 9 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 10 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 11 C 0.15 5.98 5.68 86.38 0.49 6.47 16 12 C -0.13 -4.37 5.86 30.60 0.18 -4.19 16 13 C 0.12 2.93 5.42 86.38 0.47 3.40 16 14 N -0.60 -11.95 2.87 -849.88 -2.44 -14.40 16 15 C 0.06 0.49 8.89 127.77 1.14 1.63 16 16 C 0.55 14.17 7.42 86.87 0.64 14.82 16 17 O -0.57 -20.31 16.50 -3.76 -0.06 -20.37 16 18 C -0.14 -2.72 5.28 -19.83 -0.10 -2.82 16 19 C -0.07 -0.68 7.75 22.79 0.18 -0.50 16 20 C 0.05 0.53 11.30 84.74 0.96 1.48 16 21 N -0.26 -5.48 11.48 -57.33 -0.66 -6.14 16 22 N -0.27 -6.91 11.49 -56.54 -0.65 -7.56 16 23 C 0.08 1.86 10.97 85.04 0.93 2.80 16 24 H 0.00 -0.14 7.77 -2.39 -0.02 -0.16 16 25 H 0.02 1.33 6.83 -2.39 -0.02 1.31 16 26 H 0.03 1.26 8.09 -2.39 -0.02 1.24 16 27 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.06 2.14 8.07 -2.39 -0.02 2.12 16 29 H 0.04 1.48 8.04 -2.39 -0.02 1.46 16 30 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.12 1.92 8.07 -2.39 -0.02 1.90 16 33 H 0.07 1.92 7.36 -2.39 -0.02 1.91 16 34 H 0.10 0.15 6.96 -2.39 -0.02 0.13 16 35 H 0.09 0.74 8.04 -2.39 -0.02 0.72 16 36 H 0.08 0.61 5.78 -2.39 -0.01 0.60 16 37 H 0.20 0.30 5.41 -2.91 -0.02 0.29 16 38 H 0.23 0.13 8.06 -2.91 -0.02 0.11 16 39 H 0.17 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -80.69 328.18 4.65 -76.04 By element: Atomic # 1 Polarization: -3.54 SS G_CDS: 1.05 Total: -2.50 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 7.27 Total: 16.20 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -5.64 Total: -118.16 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -0.06 Total: -20.37 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -80.69 4.65 -76.04 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502377476.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.583 kcal (2) G-P(sol) polarization free energy of solvation -80.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.044 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds