Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.36934 * 120.00337 * 2 1 4 4 H 1.07991 * 120.00604 * 204.71593 * 3 2 1 5 5 C 1.38818 * 119.99783 * 24.71731 * 3 2 1 6 6 N 1.31624 * 119.99659 * 6.51329 * 5 3 2 7 7 Si 1.86792 * 120.00011 * 186.51058 * 5 3 2 8 8 H 1.48496 * 109.47349 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.47310 * 120.00289 * 7 5 3 10 10 H 1.48507 * 109.47215 * 240.00047 * 7 5 3 11 11 C 1.46498 * 119.99552 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47512 * 90.00022 * 11 2 1 13 13 C 1.52998 * 109.47288 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47137 * 179.97438 * 13 12 11 15 15 C 1.46500 * 119.99757 * 269.72332 * 14 13 12 16 16 C 1.34772 * 120.00311 * 89.99690 * 14 13 12 17 17 O 1.21480 * 119.99690 * 356.76264 * 16 14 13 18 18 C 1.48451 * 120.00566 * 176.75725 * 16 14 13 19 19 C 1.39535 * 120.55406 * 187.10288 * 18 16 14 20 20 C 1.38762 * 118.26184 * 179.97438 * 19 18 16 21 21 N 1.32196 * 119.15018 * 359.97438 * 20 19 18 22 22 C 1.31885 * 121.03993 * 0.02562 * 21 20 19 23 23 N 1.31584 * 121.91342 * 359.73789 * 22 21 20 24 24 H 1.08996 * 109.46646 * 275.03299 * 1 2 3 25 25 H 1.09003 * 109.47072 * 35.02987 * 1 2 3 26 26 H 1.08997 * 109.47098 * 155.03252 * 1 2 3 27 27 H 0.97002 * 119.99198 * 180.02562 * 6 5 3 28 28 H 1.09000 * 109.47356 * 329.99530 * 11 2 1 29 29 H 1.09000 * 109.46613 * 209.99988 * 11 2 1 30 30 H 1.09000 * 109.47211 * 59.99420 * 12 11 2 31 31 H 1.08997 * 109.46666 * 299.99593 * 12 11 2 32 32 H 1.09000 * 109.47276 * 59.99695 * 13 12 11 33 33 H 1.09000 * 109.46918 * 300.00015 * 13 12 11 34 34 H 1.09007 * 109.47055 * 96.07589 * 15 14 13 35 35 H 1.08998 * 109.47212 * 216.07531 * 15 14 13 36 36 H 1.09001 * 109.47572 * 336.07945 * 15 14 13 37 37 H 1.07999 * 120.86389 * 0.02562 * 19 18 16 38 38 H 1.07999 * 120.41898 * 180.02562 * 20 19 18 39 39 H 1.07998 * 119.04610 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1498 1.1858 0.0000 4 1 3.1555 1.2287 -0.3910 5 6 1.5511 2.3330 0.5027 6 7 0.3782 2.2575 1.0952 7 14 2.4101 3.9835 0.3383 8 1 3.7063 3.7994 -0.3624 9 1 1.5534 4.9118 -0.4425 10 1 2.6531 4.5518 1.6886 11 6 2.1975 -1.2688 -0.0006 12 6 2.4525 -1.7099 -1.4433 13 6 3.2179 -3.0346 -1.4438 14 7 3.4616 -3.4573 -2.8252 15 6 2.4877 -4.3084 -3.5133 16 6 4.5842 -3.0678 -3.4611 17 8 5.3655 -2.3185 -2.9099 18 6 4.8660 -3.5544 -4.8350 19 6 6.0893 -3.2801 -5.4476 20 6 6.3025 -3.7585 -6.7326 21 7 5.3478 -4.4525 -7.3280 22 6 4.2025 -4.6939 -6.7201 23 7 3.9582 -4.2642 -5.5006 24 1 -0.3632 0.0902 1.0237 25 1 -0.3633 0.8415 -0.5899 26 1 -0.3633 -0.9316 -0.4338 27 1 -0.0402 3.0592 1.4462 28 1 1.6084 -2.0286 0.5130 29 1 3.1499 -1.1386 0.5133 30 1 3.0416 -0.9501 -1.9568 31 1 1.5001 -1.8400 -1.9571 32 1 2.6292 -3.7947 -0.9301 33 1 4.1703 -2.9041 -0.9300 34 1 1.8223 -3.6874 -4.1132 35 1 3.0125 -5.0101 -4.1615 36 1 1.9036 -4.8608 -2.7772 37 1 6.8506 -2.7111 -4.9347 38 1 7.2367 -3.5669 -7.2394 39 1 3.4450 -5.2647 -7.2364 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001502383624.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 37.492160 kcal Electronic energy + Delta-G solvation = -21177.208317 eV Core-core repulsion = 17928.082597 eV Total energy + Delta-G solvation = -3249.125719 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.34828 -40.59525 -37.98277 -36.88995 -35.12684 -33.92928 -33.15183 -31.91137 -28.13904 -27.89522 -27.68600 -25.74815 -25.38108 -23.80882 -22.04583 -21.25184 -19.02914 -18.70399 -18.55818 -17.27541 -17.01026 -16.72453 -16.57413 -16.41570 -15.77198 -15.57034 -15.34858 -14.80382 -14.75878 -14.56082 -14.35177 -14.02084 -13.36090 -13.25176 -12.89895 -12.79107 -12.57687 -12.54004 -12.24951 -12.10253 -11.95702 -11.89927 -11.77277 -11.58293 -11.42043 -10.85275 -10.68643 -10.15950 -9.74090 -8.74941 -7.84992 -5.36217 -0.63563 -0.11516 1.42154 1.42614 1.54197 1.58928 1.78112 2.47907 2.71484 2.79741 3.18607 3.27962 3.37432 3.69182 3.71187 3.98142 4.05088 4.31325 4.38720 4.48147 4.55641 4.57763 4.64026 4.73868 4.82341 4.87679 4.90820 5.07742 5.23393 5.26710 5.35572 5.49105 5.54416 5.60935 5.72082 5.72274 6.20985 6.32609 6.80837 6.95355 7.14815 7.86881 8.29074 9.17520 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.024640 B = 0.003572 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1136.099221 B = 7836.584560 C = 8444.935475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.179 3.821 2 N -0.624 5.624 3 C -0.264 4.264 4 H 0.060 0.940 5 C -0.052 4.052 6 N -0.938 5.938 7 Si 0.968 3.032 8 H -0.273 1.273 9 H -0.288 1.288 10 H -0.286 1.286 11 C 0.153 3.847 12 C -0.130 4.130 13 C 0.122 3.878 14 N -0.589 5.589 15 C 0.072 3.928 16 C 0.551 3.449 17 O -0.565 6.565 18 C 0.116 3.884 19 C -0.176 4.176 20 C 0.163 3.837 21 N -0.519 5.519 22 C 0.287 3.713 23 N -0.495 5.495 24 H 0.007 0.993 25 H 0.013 0.987 26 H 0.031 0.969 27 H 0.249 0.751 28 H 0.063 0.937 29 H 0.038 0.962 30 H 0.023 0.977 31 H 0.056 0.944 32 H 0.114 0.886 33 H 0.070 0.930 34 H 0.052 0.948 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.162 0.838 38 H 0.213 0.787 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.872 -18.947 -15.744 25.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.348 5.348 3 C -0.394 4.394 4 H 0.077 0.923 5 C -0.247 4.247 6 N -0.585 5.585 7 Si 0.796 3.204 8 H -0.197 1.197 9 H -0.214 1.214 10 H -0.212 1.212 11 C 0.027 3.973 12 C -0.171 4.171 13 C -0.001 4.001 14 N -0.319 5.319 15 C -0.070 4.070 16 C 0.337 3.663 17 O -0.443 6.443 18 C -0.030 4.030 19 C -0.199 4.199 20 C -0.004 4.004 21 N -0.233 5.233 22 C 0.001 3.999 23 N -0.213 5.213 24 H 0.025 0.975 25 H 0.032 0.968 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.089 0.911 34 H 0.071 0.929 35 H 0.134 0.866 36 H 0.102 0.898 37 H 0.180 0.820 38 H 0.230 0.770 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 7.433 -18.972 -15.789 25.777 hybrid contribution 0.715 1.896 0.618 2.118 sum 8.148 -17.076 -15.171 24.251 Atomic orbital electron populations 1.20545 0.82565 0.95775 0.97664 1.44156 1.02319 1.01760 1.86578 1.19482 0.98917 0.87707 1.33297 0.92265 1.25843 0.98274 1.01955 0.98627 1.70226 1.17683 1.27899 1.42725 0.85182 0.78037 0.79909 0.77228 1.19742 1.21440 1.21226 1.20803 0.95584 0.87066 0.93856 1.22298 0.99152 0.96108 0.99588 1.21603 1.00906 0.96370 0.81230 1.47963 1.20122 1.49209 1.14621 1.22601 0.91895 0.94626 0.97846 1.18367 0.81906 0.80853 0.85153 1.90798 1.49158 1.36987 1.67363 1.21484 0.92465 0.94746 0.94301 1.23157 0.98127 1.00674 0.97898 1.23943 0.98803 0.87707 0.89969 1.68468 1.02723 1.13941 1.38152 1.25874 0.93742 0.93287 0.87045 1.68837 1.32166 1.10312 1.09939 0.97490 0.96849 0.95024 0.94171 0.91892 0.94302 0.95777 0.92574 0.86843 0.91116 0.92929 0.86593 0.89768 0.82043 0.77010 0.74803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.22 8.95 127.77 1.14 10.36 16 2 N -0.62 -33.16 2.92 -726.93 -2.13 -35.29 16 3 C -0.26 -15.50 9.66 84.04 0.81 -14.69 16 4 H 0.06 3.50 7.84 -2.92 -0.02 3.48 16 5 C -0.05 -3.07 5.22 84.86 0.44 -2.63 16 6 N -0.94 -57.37 10.48 21.65 0.23 -57.14 16 7 Si 0.97 47.41 29.56 68.60 2.03 49.44 16 8 H -0.27 -12.98 7.11 99.48 0.71 -12.27 16 9 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 10 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 11 C 0.15 6.42 5.64 86.38 0.49 6.91 16 12 C -0.13 -4.79 5.86 30.59 0.18 -4.61 16 13 C 0.12 3.44 5.42 86.38 0.47 3.91 16 14 N -0.59 -15.72 2.87 -849.50 -2.44 -18.16 16 15 C 0.07 1.37 9.45 127.77 1.21 2.57 16 16 C 0.55 16.56 7.67 86.97 0.67 17.22 16 17 O -0.56 -21.20 16.06 -3.65 -0.06 -21.26 16 18 C 0.12 2.71 6.65 41.99 0.28 2.99 16 19 C -0.18 -3.27 9.72 22.71 0.22 -3.05 16 20 C 0.16 2.16 11.31 84.76 0.96 3.12 16 21 N -0.52 -7.88 10.42 -200.09 -2.09 -9.96 16 22 C 0.29 4.06 12.28 180.92 2.22 6.28 16 23 N -0.50 -9.31 6.21 -189.15 -1.17 -10.49 16 24 H 0.01 0.38 7.34 -2.39 -0.02 0.36 16 25 H 0.01 0.72 7.27 -2.39 -0.02 0.71 16 26 H 0.03 1.35 8.03 -2.39 -0.02 1.33 16 27 H 0.25 14.66 8.31 -92.71 -0.77 13.89 16 28 H 0.06 2.29 8.07 -2.39 -0.02 2.27 16 29 H 0.04 1.68 8.04 -2.39 -0.02 1.66 16 30 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 2.02 8.14 -2.39 -0.02 2.01 16 32 H 0.11 2.41 7.85 -2.39 -0.02 2.40 16 33 H 0.07 2.20 7.47 -2.39 -0.02 2.18 16 34 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.12 1.99 5.17 -2.98 -0.02 1.97 16 36 H 0.08 1.24 7.82 -2.39 -0.02 1.22 16 37 H 0.16 2.91 7.75 -2.91 -0.02 2.88 16 38 H 0.21 1.09 8.06 -2.91 -0.02 1.07 16 39 H 0.24 1.44 8.06 -2.91 -0.02 1.41 16 Total: -1.00 -76.50 329.20 4.49 -72.01 By element: Atomic # 1 Polarization: 1.42 SS G_CDS: 1.04 Total: 2.46 kcal Atomic # 6 Polarization: 19.30 SS G_CDS: 9.09 Total: 28.39 kcal Atomic # 7 Polarization: -123.44 SS G_CDS: -7.60 Total: -131.04 kcal Atomic # 8 Polarization: -21.20 SS G_CDS: -0.06 Total: -21.26 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.44 kcal Total: -76.50 4.49 -72.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001502383624.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.502 kcal (2) G-P(sol) polarization free energy of solvation -76.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds