Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36934 * 119.99964 * 2 1 4 4 H 1.07995 * 120.00364 * 212.66864 * 3 2 1 5 5 C 1.38822 * 120.00133 * 32.67644 * 3 2 1 6 6 N 1.31622 * 119.99368 * 6.15392 * 5 3 2 7 7 Si 1.86791 * 119.99890 * 186.15481 * 5 3 2 8 8 H 1.48493 * 109.47610 * 359.97438 * 7 5 3 9 9 H 1.48499 * 109.47267 * 120.00120 * 7 5 3 10 10 H 1.48507 * 109.47064 * 239.99661 * 7 5 3 11 11 C 1.46496 * 119.99905 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47393 * 89.99562 * 11 2 1 13 13 C 1.52994 * 109.47348 * 179.97438 * 12 11 2 14 14 N 1.46500 * 109.47374 * 180.02562 * 13 12 11 15 15 C 1.46504 * 120.00016 * 270.00580 * 14 13 12 16 16 C 1.34772 * 120.00117 * 89.99659 * 14 13 12 17 17 O 1.21511 * 120.00199 * 2.46972 * 16 14 13 18 18 C 1.48155 * 120.00113 * 182.46380 * 16 14 13 19 19 C 1.39441 * 120.09569 * 172.45828 * 18 16 14 20 20 N 1.32090 * 119.87036 * 179.97438 * 19 18 16 21 21 C 1.32142 * 120.06921 * 0.02562 * 20 19 18 22 22 C 1.38730 * 120.19614 * 0.27795 * 21 20 19 23 23 N 1.31799 * 120.12494 * 359.43330 * 22 21 20 24 24 H 1.09003 * 109.46912 * 265.17971 * 1 2 3 25 25 H 1.09003 * 109.46989 * 25.17394 * 1 2 3 26 26 H 1.08998 * 109.47669 * 145.17713 * 1 2 3 27 27 H 0.97002 * 119.99330 * 180.02562 * 6 5 3 28 28 H 1.08994 * 109.47046 * 329.99933 * 11 2 1 29 29 H 1.08999 * 109.47171 * 209.99806 * 11 2 1 30 30 H 1.09009 * 109.46887 * 59.99766 * 12 11 2 31 31 H 1.08999 * 109.47160 * 300.00250 * 12 11 2 32 32 H 1.09000 * 109.47359 * 59.99822 * 13 12 11 33 33 H 1.08999 * 109.47248 * 300.00263 * 13 12 11 34 34 H 1.09003 * 109.46585 * 263.73283 * 15 14 13 35 35 H 1.09000 * 109.47236 * 23.72490 * 15 14 13 36 36 H 1.08990 * 109.47341 * 143.73540 * 15 14 13 37 37 H 1.07992 * 120.06443 * 359.96464 * 19 18 16 38 38 H 1.07998 * 119.89968 * 179.97438 * 21 20 19 39 39 H 1.07998 * 119.93151 * 179.69819 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1015 1.2599 -0.5048 5 6 1.6204 2.2930 0.6491 6 7 0.5227 2.1732 1.3655 7 14 2.4658 3.9524 0.5056 8 1 3.6725 3.8210 -0.3499 9 1 1.5314 4.9331 -0.1031 10 1 2.8660 4.4225 1.8562 11 6 2.1975 -1.2687 -0.0006 12 6 2.4524 -1.7099 -1.4433 13 6 3.2179 -3.0345 -1.4438 14 7 3.4625 -3.4566 -2.8252 15 6 2.4863 -4.3024 -3.5165 16 6 4.5856 -3.0667 -3.4601 17 8 5.4164 -2.4026 -2.8726 18 6 4.8073 -3.4480 -4.8745 19 6 5.8867 -2.9181 -5.5805 20 7 6.0805 -3.2615 -6.8412 21 6 5.2528 -4.1050 -7.4324 22 6 4.1744 -4.6290 -6.7346 23 7 3.9770 -4.2961 -5.4747 24 1 -0.3633 -0.0864 1.0241 25 1 -0.3633 0.9301 -0.4371 26 1 -0.3634 -0.8436 -0.5868 27 1 0.1527 2.9469 1.8188 28 1 1.6084 -2.0285 0.5129 29 1 3.1499 -1.1386 0.5133 30 1 3.0415 -0.9499 -1.9569 31 1 1.5000 -1.8399 -1.9571 32 1 2.6293 -3.7946 -0.9301 33 1 4.1703 -2.9040 -0.9301 34 1 2.7908 -5.3462 -3.4393 35 1 1.5058 -4.1751 -3.0577 36 1 2.4361 -4.0153 -4.5668 37 1 6.5629 -2.2283 -5.0976 38 1 5.4136 -4.3836 -8.4634 39 1 3.4978 -5.3143 -7.2234 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700187975.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = 55.069986 kcal Electronic energy + Delta-G solvation = -21191.003351 eV Core-core repulsion = 17942.639863 eV Total energy + Delta-G solvation = -3248.363488 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.61928 -39.47982 -36.33324 -35.48248 -34.61130 -32.45165 -31.79838 -30.12185 -26.97669 -26.44948 -25.71564 -25.01184 -24.38257 -22.26488 -20.27149 -19.98579 -18.13917 -17.47443 -17.13175 -16.61213 -15.94544 -15.87367 -15.31330 -14.79363 -14.54394 -14.22534 -13.82202 -13.33223 -13.20400 -13.10838 -12.86652 -12.76957 -12.55959 -11.81102 -11.62822 -11.37541 -11.06920 -10.89468 -10.80381 -10.71478 -10.38658 -10.35769 -10.12769 -9.87889 -9.81740 -9.64874 -9.28253 -8.63122 -8.42565 -6.52617 -5.69659 -3.22582 0.06642 0.64403 2.57063 2.84100 3.41250 3.45872 3.48458 3.52214 3.61593 3.82025 4.05459 4.37652 4.55219 4.74652 4.77957 5.13607 5.24341 5.36125 5.41882 5.48611 5.61836 5.79208 5.83764 6.00715 6.10284 6.13704 6.22749 6.52914 6.62834 6.72964 6.83645 6.89825 7.08924 7.20842 7.36297 7.39825 7.72108 7.89335 8.03628 8.54048 9.32033 9.92589 10.46993 11.36756 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.023953 B = 0.003625 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.673323 B = 7722.704843 C = 8362.633247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.601 5.601 3 C -0.256 4.256 4 H 0.064 0.936 5 C 0.007 3.993 6 N -0.906 5.906 7 Si 0.903 3.097 8 H -0.276 1.276 9 H -0.290 1.290 10 H -0.289 1.289 11 C 0.155 3.845 12 C -0.150 4.150 13 C 0.113 3.887 14 N -0.590 5.590 15 C 0.076 3.924 16 C 0.566 3.434 17 O -0.524 6.524 18 C 0.036 3.964 19 C 0.110 3.890 20 N -0.440 5.440 21 C 0.068 3.932 22 C 0.041 3.959 23 N -0.405 5.405 24 H 0.019 0.981 25 H 0.048 0.952 26 H -0.008 1.008 27 H 0.252 0.748 28 H 0.034 0.966 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.053 0.947 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.184 0.816 38 H 0.175 0.825 39 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.070 -17.312 -16.162 24.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.323 5.323 3 C -0.386 4.386 4 H 0.082 0.918 5 C -0.192 4.192 6 N -0.551 5.551 7 Si 0.732 3.268 8 H -0.201 1.201 9 H -0.217 1.217 10 H -0.216 1.216 11 C 0.027 3.973 12 C -0.192 4.192 13 C -0.009 4.009 14 N -0.321 5.321 15 C -0.066 4.066 16 C 0.351 3.649 17 O -0.399 6.399 18 C -0.105 4.105 19 C -0.049 4.049 20 N -0.154 5.154 21 C -0.093 4.093 22 C -0.120 4.120 23 N -0.123 5.123 24 H 0.037 0.963 25 H 0.067 0.933 26 H 0.011 0.989 27 H 0.062 0.938 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.095 0.905 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.201 0.799 38 H 0.192 0.808 39 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.402 -16.802 -15.675 23.605 hybrid contribution 0.145 0.851 -0.202 0.887 sum 5.547 -15.951 -15.877 23.179 Atomic orbital electron populations 1.20726 0.83195 0.96824 0.97455 1.43781 1.01541 1.00732 1.86271 1.19202 1.04242 0.87847 1.27347 0.91808 1.25265 0.97940 0.99164 0.96810 1.70029 1.21997 1.29046 1.33987 0.86209 0.79096 0.84068 0.77388 1.20133 1.21650 1.21552 1.20638 0.96206 0.88495 0.91954 1.22604 0.99226 0.95138 1.02207 1.21724 1.01669 0.97289 0.80187 1.47831 1.19972 1.49535 1.14788 1.22322 0.91176 0.93809 0.99341 1.17668 0.82471 0.80453 0.84316 1.90836 1.44281 1.38849 1.65963 1.22341 0.94518 0.96944 0.96695 1.23878 0.95014 0.96154 0.89877 1.68649 1.26754 1.10496 1.09504 1.24102 0.91312 0.92245 1.01633 1.24016 0.97701 0.99030 0.91272 1.68944 1.24033 1.09400 1.09955 0.96258 0.93304 0.98932 0.93803 0.94789 0.93304 0.91860 0.92846 0.90506 0.89711 0.92674 0.91708 0.88241 0.79927 0.80837 0.80579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.13 9.00 59.85 0.54 4.67 16 2 N -0.60 -15.79 2.89 -181.12 -0.52 -16.31 16 3 C -0.26 -7.38 9.56 -15.06 -0.14 -7.53 16 4 H 0.06 1.84 7.84 -52.49 -0.41 1.43 16 5 C 0.01 0.20 5.16 -17.43 -0.09 0.11 16 6 N -0.91 -27.21 11.04 55.49 0.61 -26.59 16 7 Si 0.90 22.57 29.56 -169.99 -5.02 17.54 16 8 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 9 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 C 0.16 3.30 5.69 -4.04 -0.02 3.28 16 12 C -0.15 -2.77 5.86 -26.73 -0.16 -2.93 16 13 C 0.11 1.69 5.40 -4.04 -0.02 1.66 16 14 N -0.59 -8.19 2.87 -182.58 -0.52 -8.72 16 15 C 0.08 0.81 9.33 59.85 0.56 1.37 16 16 C 0.57 8.54 7.66 -12.19 -0.09 8.44 16 17 O -0.52 -9.52 15.93 5.36 0.09 -9.43 16 18 C 0.04 0.44 6.62 -82.84 -0.55 -0.11 16 19 C 0.11 1.27 10.77 -16.99 -0.18 1.09 16 20 N -0.44 -4.52 10.49 -12.71 -0.13 -4.65 16 21 C 0.07 0.47 11.23 -17.24 -0.19 0.28 16 22 C 0.04 0.28 11.22 -17.38 -0.20 0.08 16 23 N -0.40 -4.03 6.23 -9.61 -0.06 -4.09 16 24 H 0.02 0.52 7.74 -51.93 -0.40 0.11 16 25 H 0.05 1.33 7.17 -51.93 -0.37 0.96 16 26 H -0.01 -0.17 8.11 -51.93 -0.42 -0.59 16 27 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 28 H 0.03 0.66 8.07 -51.93 -0.42 0.24 16 29 H 0.05 1.07 8.04 -51.93 -0.42 0.65 16 30 H 0.06 1.35 8.14 -51.92 -0.42 0.93 16 31 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 33 H 0.08 1.35 7.39 -51.93 -0.38 0.97 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.64 8.02 -51.93 -0.42 0.23 16 36 H 0.10 1.04 5.26 -52.00 -0.27 0.77 16 37 H 0.18 2.03 7.67 -52.49 -0.40 1.63 16 38 H 0.17 0.54 8.06 -52.49 -0.42 0.12 16 39 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 LS Contribution 330.05 15.07 4.97 4.97 Total: -1.00 -34.52 330.05 -6.73 -41.25 By element: Atomic # 1 Polarization: 1.19 SS G_CDS: -5.59 Total: -4.39 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: -0.55 Total: 10.42 kcal Atomic # 7 Polarization: -59.74 SS G_CDS: -0.63 Total: -60.37 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.09 Total: -9.43 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.52 -6.73 -41.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700187975.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.320 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds