Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.36936 * 119.99862 * 2 1 4 4 H 1.08002 * 119.99830 * 203.67481 * 3 2 1 5 5 C 1.38806 * 120.00295 * 23.68250 * 3 2 1 6 6 N 1.31627 * 119.99816 * 10.24821 * 5 3 2 7 7 Si 1.86803 * 120.00356 * 190.25825 * 5 3 2 8 8 H 1.48506 * 109.46840 * 359.97438 * 7 5 3 9 9 H 1.48500 * 109.47315 * 119.99363 * 7 5 3 10 10 H 1.48494 * 109.47103 * 239.99440 * 7 5 3 11 11 C 1.46500 * 119.99853 * 180.02562 * 2 1 3 12 12 C 1.52995 * 109.47204 * 269.99583 * 11 2 1 13 13 C 1.53002 * 109.47564 * 180.02562 * 12 11 2 14 14 N 1.46503 * 109.47218 * 180.02562 * 13 12 11 15 15 C 1.46499 * 119.99778 * 269.99710 * 14 13 12 16 16 C 1.34778 * 119.99817 * 89.99687 * 14 13 12 17 17 O 1.21549 * 119.99984 * 4.83270 * 16 14 13 18 18 C 1.47831 * 119.99405 * 184.82557 * 16 14 13 19 19 C 1.39941 * 120.94589 * 321.96358 * 18 16 14 20 20 N 1.32147 * 118.92727 * 179.74972 * 19 18 16 21 21 C 1.31861 * 120.96615 * 0.25407 * 20 19 18 22 22 N 1.31871 * 122.09768 * 359.97438 * 21 20 19 23 23 C 1.32149 * 120.96599 * 0.02562 * 22 21 20 24 24 H 1.09000 * 109.46550 * 274.98211 * 1 2 3 25 25 H 1.09001 * 109.46873 * 34.98422 * 1 2 3 26 26 H 1.08997 * 109.47076 * 154.98311 * 1 2 3 27 27 H 0.97004 * 119.99922 * 180.02562 * 6 5 3 28 28 H 1.09005 * 109.47329 * 149.99994 * 11 2 1 29 29 H 1.08996 * 109.47344 * 29.99993 * 11 2 1 30 30 H 1.09000 * 109.46963 * 59.99643 * 12 11 2 31 31 H 1.09005 * 109.47356 * 300.00287 * 12 11 2 32 32 H 1.08997 * 109.46938 * 59.99717 * 13 12 11 33 33 H 1.09002 * 109.46380 * 299.99831 * 13 12 11 34 34 H 1.08992 * 109.47344 * 264.75736 * 15 14 13 35 35 H 1.09000 * 109.47486 * 24.76122 * 15 14 13 36 36 H 1.09001 * 109.47096 * 144.75950 * 15 14 13 37 37 H 1.08010 * 120.53823 * 0.02835 * 19 18 16 38 38 H 1.08005 * 118.94980 * 179.97438 * 21 20 19 39 39 H 1.07996 * 120.53769 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1616 1.2253 -0.3756 5 6 1.5434 2.3374 0.4828 6 7 0.3959 2.2582 1.1228 7 14 2.3557 3.9996 0.2242 8 1 3.6290 3.8181 -0.5181 9 1 1.4480 4.8780 -0.5566 10 1 2.6361 4.6239 1.5420 11 6 2.1975 -1.2687 -0.0006 12 6 2.4526 -1.7110 1.4417 13 6 3.2181 -3.0357 1.4412 14 7 3.4618 -3.4595 2.8223 15 6 4.6822 -3.0366 3.5137 16 6 2.5632 -4.2384 3.4566 17 8 1.5947 -4.6616 2.8564 18 6 2.7558 -4.5780 4.8825 19 6 4.0319 -4.8393 5.3940 20 7 4.1586 -5.1341 6.6759 21 6 3.1050 -5.1885 7.4670 22 7 1.8847 -4.9539 7.0258 23 6 1.6664 -4.6518 5.7579 24 1 -0.3632 0.0892 1.0238 25 1 -0.3633 0.8420 -0.5892 26 1 -0.3633 -0.9312 -0.4346 27 1 -0.0280 3.0629 1.4599 28 1 3.1500 -1.1382 -0.5144 29 1 1.6085 -2.0281 -0.5147 30 1 1.5002 -1.8415 1.9555 31 1 3.0417 -0.9516 1.9559 32 1 4.1705 -2.9048 0.9275 33 1 2.6293 -3.7953 0.9270 34 1 5.4406 -3.8138 3.4203 35 1 5.0514 -2.1133 3.0673 36 1 4.4626 -2.8680 4.5679 37 1 4.8997 -4.7964 4.7524 38 1 3.2461 -5.4329 8.5095 39 1 0.6641 -4.4606 5.4041 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717206285.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = 27.631765 kcal Electronic energy + Delta-G solvation = -21284.329022 eV Core-core repulsion = 18034.775724 eV Total energy + Delta-G solvation = -3249.553298 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.38605 -40.61610 -37.95046 -36.89149 -34.97937 -34.32540 -33.30976 -31.75098 -28.32805 -27.93863 -27.45711 -25.67332 -25.59116 -23.77402 -21.99742 -20.90082 -19.03379 -18.78335 -18.69043 -18.24279 -17.30539 -16.79763 -16.45668 -15.86966 -15.69132 -15.35056 -15.04790 -15.00195 -14.76156 -14.68062 -14.33024 -13.97835 -13.25510 -13.12686 -13.07581 -12.80850 -12.77023 -12.55273 -12.45523 -12.27143 -12.01106 -11.96586 -11.86414 -11.39512 -11.15414 -10.78433 -10.66652 -10.45903 -9.79495 -8.77671 -7.82138 -5.32431 -0.61276 -0.12955 1.45764 1.46882 1.48809 1.57967 1.88756 2.51314 2.63006 3.01717 3.04477 3.27782 3.32714 3.35700 3.69629 3.79437 4.07503 4.15399 4.27989 4.36505 4.52138 4.55532 4.62086 4.65231 4.78056 4.82860 4.86092 4.91021 5.15923 5.25837 5.27766 5.39222 5.53513 5.64996 5.68353 5.69849 6.21264 6.33937 6.85653 6.92325 7.14881 7.87138 8.32844 9.21948 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022957 B = 0.003665 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.377262 B = 7637.650345 C = 7826.514737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.622 5.622 3 C -0.259 4.259 4 H 0.078 0.922 5 C -0.057 4.057 6 N -0.944 5.944 7 Si 0.970 3.030 8 H -0.261 1.261 9 H -0.294 1.294 10 H -0.294 1.294 11 C 0.151 3.849 12 C -0.132 4.132 13 C 0.125 3.875 14 N -0.603 5.603 15 C 0.061 3.939 16 C 0.562 3.438 17 O -0.570 6.570 18 C -0.246 4.246 19 C 0.187 3.813 20 N -0.528 5.528 21 C 0.310 3.690 22 N -0.536 5.536 23 C 0.193 3.807 24 H -0.002 1.002 25 H 0.017 0.983 26 H 0.026 0.974 27 H 0.246 0.754 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.019 0.981 31 H 0.045 0.955 32 H 0.113 0.887 33 H 0.076 0.924 34 H 0.101 0.899 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.209 0.791 38 H 0.235 0.765 39 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.765 -15.248 8.689 21.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.345 5.345 3 C -0.390 4.390 4 H 0.096 0.904 5 C -0.252 4.252 6 N -0.591 5.591 7 Si 0.799 3.201 8 H -0.185 1.185 9 H -0.221 1.221 10 H -0.221 1.221 11 C 0.025 3.975 12 C -0.174 4.174 13 C 0.003 3.997 14 N -0.333 5.333 15 C -0.081 4.081 16 C 0.350 3.650 17 O -0.450 6.450 18 C -0.254 4.254 19 C 0.021 3.979 20 N -0.241 5.241 21 C 0.024 3.976 22 N -0.250 5.250 23 C 0.027 3.973 24 H 0.016 0.984 25 H 0.036 0.964 26 H 0.044 0.956 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.064 0.936 32 H 0.131 0.869 33 H 0.095 0.905 34 H 0.119 0.881 35 H 0.107 0.893 36 H 0.089 0.911 37 H 0.225 0.775 38 H 0.251 0.749 39 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 11.326 -15.566 9.378 21.413 hybrid contribution -0.561 1.496 -0.710 1.749 sum 10.765 -14.069 8.668 19.722 Atomic orbital electron populations 1.20507 0.83301 0.95661 0.97248 1.44247 1.02000 1.02153 1.86094 1.19655 0.98990 0.86682 1.33626 0.90427 1.25885 0.98454 1.02186 0.98658 1.70272 1.19744 1.27514 1.41602 0.85148 0.78252 0.79786 0.76948 1.18451 1.22084 1.22077 1.20939 0.96269 0.86482 0.93794 1.22337 0.98447 0.96433 1.00158 1.21563 1.01928 0.95090 0.81169 1.47901 1.21696 1.48817 1.14926 1.22463 0.85330 1.02703 0.97594 1.18177 0.82339 0.78491 0.86020 1.90791 1.31429 1.54886 1.67896 1.21661 0.98232 1.09687 0.95813 1.24339 0.96077 0.85570 0.91955 1.68644 1.34957 1.15455 1.05060 1.25988 0.82393 0.87200 1.01984 1.68619 1.26503 1.14492 1.15354 1.23503 0.99595 0.86283 0.87943 0.98406 0.96444 0.95583 0.94496 0.91871 0.92965 0.96183 0.93619 0.86852 0.90537 0.88132 0.89285 0.91147 0.77511 0.74859 0.81086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.32 9.01 127.77 1.15 10.47 16 2 N -0.62 -31.77 2.92 -726.94 -2.12 -33.90 16 3 C -0.26 -14.18 9.66 84.03 0.81 -13.36 16 4 H 0.08 4.01 7.84 -2.91 -0.02 3.99 16 5 C -0.06 -3.24 5.15 84.86 0.44 -2.80 16 6 N -0.94 -57.22 10.60 21.65 0.23 -56.99 16 7 Si 0.97 44.92 29.57 68.60 2.03 46.95 16 8 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 9 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 10 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 11 C 0.15 5.97 5.71 86.38 0.49 6.46 16 12 C -0.13 -4.83 5.86 30.59 0.18 -4.65 16 13 C 0.13 3.27 5.42 86.38 0.47 3.74 16 14 N -0.60 -14.20 2.87 -850.22 -2.44 -16.64 16 15 C 0.06 0.88 8.88 127.77 1.13 2.01 16 16 C 0.56 15.65 7.40 86.78 0.64 16.29 16 17 O -0.57 -20.62 16.48 -3.87 -0.06 -20.68 16 18 C -0.25 -5.57 5.28 -19.91 -0.11 -5.67 16 19 C 0.19 3.13 8.87 85.06 0.75 3.89 16 20 N -0.53 -9.11 10.42 -198.98 -2.07 -11.18 16 21 C 0.31 5.16 12.27 180.84 2.22 7.38 16 22 N -0.54 -11.59 10.42 -198.98 -2.07 -13.66 16 23 C 0.19 4.58 10.95 85.06 0.93 5.51 16 24 H 0.00 -0.14 7.34 -2.39 -0.02 -0.16 16 25 H 0.02 0.95 7.30 -2.39 -0.02 0.94 16 26 H 0.03 1.17 7.84 -2.39 -0.02 1.16 16 27 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 28 H 0.06 2.24 8.03 -2.38 -0.02 2.22 16 29 H 0.05 1.91 7.86 -2.39 -0.02 1.89 16 30 H 0.02 0.85 8.14 -2.39 -0.02 0.84 16 31 H 0.04 1.80 8.14 -2.38 -0.02 1.78 16 32 H 0.11 2.19 8.07 -2.39 -0.02 2.17 16 33 H 0.08 2.16 7.36 -2.39 -0.02 2.14 16 34 H 0.10 0.72 6.88 -2.39 -0.02 0.70 16 35 H 0.09 1.28 8.03 -2.39 -0.02 1.26 16 36 H 0.07 1.02 5.84 -2.39 -0.01 1.01 16 37 H 0.21 2.08 5.29 -2.91 -0.02 2.06 16 38 H 0.24 1.97 8.06 -2.91 -0.02 1.95 16 39 H 0.17 4.11 8.06 -2.91 -0.02 4.08 16 Total: -1.00 -75.14 327.49 3.64 -71.49 By element: Atomic # 1 Polarization: 4.32 SS G_CDS: 1.05 Total: 5.36 kcal Atomic # 6 Polarization: 20.14 SS G_CDS: 9.12 Total: 29.26 kcal Atomic # 7 Polarization: -123.89 SS G_CDS: -8.49 Total: -132.38 kcal Atomic # 8 Polarization: -20.62 SS G_CDS: -0.06 Total: -20.68 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -75.14 3.64 -71.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717206285.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.125 kcal (2) G-P(sol) polarization free energy of solvation -75.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds