Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00276 * 2 1 4 4 H 1.07999 * 120.00569 * 173.53832 * 3 2 1 5 5 C 1.38811 * 119.99813 * 353.53868 * 3 2 1 6 6 N 1.31626 * 120.00081 * 5.24876 * 5 3 2 7 7 Si 1.86795 * 120.00288 * 185.25112 * 5 3 2 8 8 H 1.48495 * 109.47307 * 89.99754 * 7 5 3 9 9 H 1.48500 * 109.47442 * 210.00210 * 7 5 3 10 10 H 1.48507 * 109.46938 * 329.99880 * 7 5 3 11 11 C 1.46505 * 119.99974 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47496 * 275.65081 * 11 2 1 13 13 H 1.08996 * 109.99842 * 53.98555 * 12 11 2 14 14 C 1.54334 * 109.98957 * 292.95312 * 12 11 2 15 15 C 1.55154 * 103.02102 * 218.66572 * 14 12 11 16 16 C 1.54910 * 101.57983 * 35.30613 * 15 14 12 17 17 N 1.47016 * 109.88295 * 175.08810 * 12 11 2 18 18 C 1.34779 * 125.64652 * 298.38905 * 17 12 11 19 19 O 1.21568 * 119.99988 * 354.74177 * 18 17 12 20 20 C 1.47708 * 119.99930 * 174.73264 * 18 17 12 21 21 C 1.41505 * 126.51866 * 180.29167 * 20 18 17 22 22 C 1.35365 * 105.50451 * 180.10268 * 21 20 18 23 23 N 1.35035 * 107.22592 * 359.63867 * 22 21 20 24 24 H 0.96999 * 124.88121 * 180.25481 * 23 22 21 25 25 N 1.28465 * 110.23087 * 0.24265 * 23 22 21 26 26 H 1.08999 * 109.46761 * 184.25459 * 1 2 3 27 27 H 1.08994 * 109.47145 * 304.25479 * 1 2 3 28 28 H 1.08997 * 109.46948 * 64.25346 * 1 2 3 29 29 H 0.96999 * 119.99894 * 179.97438 * 6 5 3 30 30 H 1.09006 * 109.46778 * 155.64667 * 11 2 1 31 31 H 1.09001 * 109.46954 * 35.65321 * 11 2 1 32 32 H 1.08998 * 110.84898 * 100.19600 * 14 12 11 33 33 H 1.08999 * 110.51849 * 336.97533 * 14 12 11 34 34 H 1.09000 * 111.00396 * 277.23222 * 15 14 12 35 35 H 1.08998 * 111.00668 * 153.37765 * 15 14 12 36 36 H 1.09008 * 110.36544 * 204.15526 * 16 15 14 37 37 H 1.08994 * 110.46254 * 81.88123 * 16 15 14 38 38 H 1.08004 * 127.24507 * 359.97438 * 21 20 18 39 39 H 1.07999 * 126.38537 * 179.90016 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2246 1.1889 0.1053 5 6 1.4623 2.3842 -0.1353 6 7 0.1463 2.3889 -0.1597 7 14 2.4048 3.9902 -0.2828 8 1 2.6799 4.2730 -1.7144 9 1 1.5954 5.0939 0.2933 10 1 3.6886 3.8803 0.4556 11 6 2.1975 -1.2688 0.0006 12 6 2.3296 -1.7809 1.4362 13 1 1.3467 -1.8360 1.9042 14 6 3.2434 -0.8403 2.2500 15 6 4.0566 -1.8220 3.1344 16 6 4.2302 -3.0297 2.1799 17 7 2.9592 -3.1094 1.4373 18 6 2.4599 -4.2157 0.8514 19 8 1.3569 -4.1881 0.3409 20 6 3.2528 -5.4617 0.8294 21 6 2.8683 -6.6945 0.2507 22 6 3.9028 -7.5381 0.4756 23 7 4.8489 -6.8419 1.1417 24 1 5.7029 -7.2013 1.4289 25 7 4.4555 -5.6352 1.3400 26 1 -0.3633 -1.0248 0.0762 27 1 -0.3633 0.5784 0.8494 28 1 -0.3633 0.4464 -0.9256 29 1 -0.3340 3.2263 -0.2538 30 1 3.1900 -1.1154 -0.4233 31 1 1.6560 -2.0012 -0.5981 32 1 2.6525 -0.1639 2.8675 33 1 3.9036 -0.2813 1.5869 34 1 3.4935 -2.1047 4.0238 35 1 5.0227 -1.3957 3.4047 36 1 4.3940 -3.9438 2.7507 37 1 5.0599 -2.8575 1.4944 38 1 1.9432 -6.9162 -0.2606 39 1 3.9623 -8.5735 0.1743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717364022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 84.080963 kcal Electronic energy + Delta-G solvation = -22100.123530 eV Core-core repulsion = 18853.018053 eV Total energy + Delta-G solvation = -3247.105477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -42.71307 -39.58006 -37.10536 -35.21014 -32.28337 -31.38080 -31.24110 -30.49904 -28.78060 -25.82861 -25.17640 -24.35767 -22.07450 -21.76005 -21.11562 -20.00793 -18.81738 -18.18946 -16.86541 -16.64176 -16.02109 -15.56864 -14.87136 -14.58236 -13.85081 -13.78208 -13.64776 -13.41782 -13.12926 -12.90550 -12.65776 -12.43908 -11.94757 -11.69404 -11.18051 -11.03989 -10.84352 -10.69651 -10.56782 -10.33655 -10.18674 -10.03682 -9.83730 -9.66979 -9.55840 -9.48680 -9.33391 -8.50657 -8.21341 -6.75955 -5.52794 -2.95550 1.58470 2.05776 2.70374 3.32581 3.44582 3.49973 3.51490 3.62128 4.39093 4.58785 4.68380 4.95355 4.95975 5.31117 5.32595 5.53453 5.54965 5.63639 5.75000 5.78138 5.89505 5.97723 6.08635 6.21780 6.24336 6.43507 6.51559 6.65848 6.72693 6.82759 6.91429 7.02341 7.10062 7.68894 7.78379 7.84373 7.91341 8.07761 8.47343 8.52478 9.38443 10.01910 10.46876 11.46303 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030789 B = 0.004385 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.199491 B = 6384.150078 C = 6871.394256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.170 3.830 2 N -0.606 5.606 3 C -0.240 4.240 4 H 0.073 0.927 5 C -0.007 4.007 6 N -0.917 5.917 7 Si 0.906 3.094 8 H -0.290 1.290 9 H -0.292 1.292 10 H -0.282 1.282 11 C 0.150 3.850 12 C 0.114 3.886 13 H 0.070 0.930 14 C -0.108 4.108 15 C -0.140 4.140 16 C 0.108 3.892 17 N -0.598 5.598 18 C 0.608 3.392 19 O -0.529 6.529 20 C 0.000 4.000 21 C -0.180 4.180 22 C -0.019 4.019 23 N -0.389 5.389 24 H 0.444 0.556 25 N -0.259 5.259 26 H -0.006 1.006 27 H 0.044 0.956 28 H 0.038 0.962 29 H 0.248 0.752 30 H 0.046 0.954 31 H 0.047 0.953 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.163 0.837 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.048 -18.917 5.404 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.329 5.329 3 C -0.369 4.369 4 H 0.091 0.909 5 C -0.202 4.202 6 N -0.566 5.566 7 Si 0.736 3.264 8 H -0.217 1.217 9 H -0.219 1.219 10 H -0.208 1.208 11 C 0.021 3.979 12 C 0.010 3.990 13 H 0.088 0.912 14 C -0.146 4.146 15 C -0.178 4.178 16 C -0.015 4.015 17 N -0.332 5.332 18 C 0.394 3.606 19 O -0.404 6.404 20 C -0.162 4.162 21 C -0.208 4.208 22 C -0.164 4.164 23 N -0.103 5.103 24 H 0.288 0.712 25 N -0.095 5.095 26 H 0.013 0.987 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.180 0.820 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 11.070 -18.208 5.619 22.038 hybrid contribution 0.397 0.196 -0.323 0.549 sum 11.467 -18.012 5.296 22.000 Atomic orbital electron populations 1.21019 0.81487 0.93260 1.01632 1.43997 1.02483 1.00236 1.86206 1.19313 0.91116 0.83803 1.42659 0.90882 1.24868 0.95656 0.97755 1.01971 1.70249 1.04958 1.24602 1.56747 0.86223 0.78664 0.83778 0.77701 1.21723 1.21860 1.20766 1.21005 0.96295 0.88431 0.92215 1.22740 0.96167 0.79176 1.00966 0.91163 1.22537 0.97912 0.96442 0.97667 1.22868 1.00920 0.96040 0.97951 1.22342 0.86140 0.99035 0.94023 1.48512 1.22782 1.09259 1.52636 1.16491 0.84675 0.80604 0.78831 1.90816 1.19306 1.83607 1.46645 1.22119 0.92951 0.96588 1.04517 1.21840 1.01396 0.91706 1.05903 1.22913 0.90879 1.00041 1.02523 1.43426 1.17244 1.07411 1.42230 0.71214 1.73680 1.14077 1.00693 1.21067 0.98749 0.93729 0.94391 0.94092 0.93582 0.93455 0.90072 0.90255 0.91295 0.90396 0.90105 0.91696 0.81972 0.79979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 4.58 8.99 59.85 0.54 5.12 16 2 N -0.61 -15.96 2.83 -181.12 -0.51 -16.47 16 3 C -0.24 -6.61 9.00 -15.06 -0.14 -6.75 16 4 H 0.07 1.93 7.15 -52.49 -0.38 1.55 16 5 C -0.01 -0.19 5.46 -17.43 -0.10 -0.28 16 6 N -0.92 -27.29 9.45 55.49 0.52 -26.76 16 7 Si 0.91 22.21 29.56 -169.99 -5.02 17.19 16 8 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 9 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.15 3.40 5.05 -4.04 -0.02 3.38 16 12 C 0.11 2.25 3.08 -66.95 -0.21 2.04 16 13 H 0.07 1.53 8.14 -51.93 -0.42 1.11 16 14 C -0.11 -1.88 5.78 -24.89 -0.14 -2.02 16 15 C -0.14 -1.87 7.09 -24.58 -0.17 -2.04 16 16 C 0.11 1.50 5.99 -2.53 -0.02 1.48 16 17 N -0.60 -10.39 3.06 -164.17 -0.50 -10.90 16 18 C 0.61 11.07 7.57 -12.39 -0.09 10.98 16 19 O -0.53 -11.37 16.11 5.31 0.09 -11.29 16 20 C 0.00 -0.01 6.96 -82.77 -0.58 -0.58 16 21 C -0.18 -2.13 10.81 -39.36 -0.43 -2.55 16 22 C -0.02 -0.15 12.02 -17.17 -0.21 -0.36 16 23 N -0.39 -3.08 6.83 30.47 0.21 -2.87 16 24 H 0.44 1.65 8.96 -190.44 -1.71 -0.06 16 25 N -0.26 -3.12 9.49 33.42 0.32 -2.80 16 26 H -0.01 -0.15 7.90 -51.93 -0.41 -0.57 16 27 H 0.04 1.27 7.01 -51.93 -0.36 0.91 16 28 H 0.04 1.10 7.07 -51.93 -0.37 0.73 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.05 1.03 7.88 -51.93 -0.41 0.62 16 31 H 0.05 1.14 6.83 -51.93 -0.35 0.78 16 32 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 33 H 0.08 1.47 6.86 -51.93 -0.36 1.11 16 34 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.08 1.03 6.52 -51.92 -0.34 0.70 16 37 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.16 1.81 8.06 -52.48 -0.42 1.39 16 39 H 0.18 0.62 8.06 -52.49 -0.42 0.19 16 LS Contribution 317.76 15.07 4.79 4.79 Total: -1.00 -34.34 317.76 -8.45 -42.79 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -6.78 Total: -2.10 kcal Atomic # 6 Polarization: 9.98 SS G_CDS: -1.55 Total: 8.43 kcal Atomic # 7 Polarization: -59.84 SS G_CDS: 0.03 Total: -59.80 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.34 -8.45 -42.79 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717364022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.868 kcal (2) G-P(sol) polarization free energy of solvation -34.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds