Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36936 * 120.00276 * 2 1 4 4 H 1.07999 * 120.00569 * 173.53832 * 3 2 1 5 5 C 1.38811 * 119.99813 * 353.53868 * 3 2 1 6 6 N 1.31626 * 120.00081 * 5.24876 * 5 3 2 7 7 Si 1.86795 * 120.00288 * 185.25112 * 5 3 2 8 8 H 1.48495 * 109.47307 * 89.99754 * 7 5 3 9 9 H 1.48500 * 109.47442 * 210.00210 * 7 5 3 10 10 H 1.48507 * 109.46938 * 329.99880 * 7 5 3 11 11 C 1.46505 * 119.99974 * 179.97438 * 2 1 3 12 12 C 1.52998 * 109.47496 * 275.65081 * 11 2 1 13 13 H 1.08996 * 109.99842 * 53.98555 * 12 11 2 14 14 C 1.54334 * 109.98957 * 292.95312 * 12 11 2 15 15 C 1.55154 * 103.02102 * 218.66572 * 14 12 11 16 16 C 1.54910 * 101.57983 * 35.30613 * 15 14 12 17 17 N 1.47016 * 109.88295 * 175.08810 * 12 11 2 18 18 C 1.34779 * 125.64652 * 298.38905 * 17 12 11 19 19 O 1.21568 * 119.99988 * 354.74177 * 18 17 12 20 20 C 1.47708 * 119.99930 * 174.73264 * 18 17 12 21 21 C 1.41505 * 126.51866 * 180.29167 * 20 18 17 22 22 C 1.35365 * 105.50451 * 180.10268 * 21 20 18 23 23 N 1.35035 * 107.22592 * 359.63867 * 22 21 20 24 24 H 0.96999 * 124.88121 * 180.25481 * 23 22 21 25 25 N 1.28465 * 110.23087 * 0.24265 * 23 22 21 26 26 H 1.08999 * 109.46761 * 184.25459 * 1 2 3 27 27 H 1.08994 * 109.47145 * 304.25479 * 1 2 3 28 28 H 1.08997 * 109.46948 * 64.25346 * 1 2 3 29 29 H 0.96999 * 119.99894 * 179.97438 * 6 5 3 30 30 H 1.09006 * 109.46778 * 155.64667 * 11 2 1 31 31 H 1.09001 * 109.46954 * 35.65321 * 11 2 1 32 32 H 1.08998 * 110.84898 * 100.19600 * 14 12 11 33 33 H 1.08999 * 110.51849 * 336.97533 * 14 12 11 34 34 H 1.09000 * 111.00396 * 277.23222 * 15 14 12 35 35 H 1.08998 * 111.00668 * 153.37765 * 15 14 12 36 36 H 1.09008 * 110.36544 * 204.15526 * 16 15 14 37 37 H 1.08994 * 110.46254 * 81.88123 * 16 15 14 38 38 H 1.08004 * 127.24507 * 359.97438 * 21 20 18 39 39 H 1.07999 * 126.38537 * 179.90016 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.2246 1.1889 0.1053 5 6 1.4623 2.3842 -0.1353 6 7 0.1463 2.3889 -0.1597 7 14 2.4048 3.9902 -0.2828 8 1 2.6799 4.2730 -1.7144 9 1 1.5954 5.0939 0.2933 10 1 3.6886 3.8803 0.4556 11 6 2.1975 -1.2688 0.0006 12 6 2.3296 -1.7809 1.4362 13 1 1.3467 -1.8360 1.9042 14 6 3.2434 -0.8403 2.2500 15 6 4.0566 -1.8220 3.1344 16 6 4.2302 -3.0297 2.1799 17 7 2.9592 -3.1094 1.4373 18 6 2.4599 -4.2157 0.8514 19 8 1.3569 -4.1881 0.3409 20 6 3.2528 -5.4617 0.8294 21 6 2.8683 -6.6945 0.2507 22 6 3.9028 -7.5381 0.4756 23 7 4.8489 -6.8419 1.1417 24 1 5.7029 -7.2013 1.4289 25 7 4.4555 -5.6352 1.3400 26 1 -0.3633 -1.0248 0.0762 27 1 -0.3633 0.5784 0.8494 28 1 -0.3633 0.4464 -0.9256 29 1 -0.3340 3.2263 -0.2538 30 1 3.1900 -1.1154 -0.4233 31 1 1.6560 -2.0012 -0.5981 32 1 2.6525 -0.1639 2.8675 33 1 3.9036 -0.2813 1.5869 34 1 3.4935 -2.1047 4.0238 35 1 5.0227 -1.3957 3.4047 36 1 4.3940 -3.9438 2.7507 37 1 5.0599 -2.8575 1.4944 38 1 1.9432 -6.9162 -0.2606 39 1 3.9623 -8.5735 0.1743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717364022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 60.220686 kcal Electronic energy + Delta-G solvation = -22101.158189 eV Core-core repulsion = 18853.018053 eV Total energy + Delta-G solvation = -3248.140137 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.54647 -40.99476 -38.62067 -37.16325 -33.68317 -33.05906 -32.27992 -31.49553 -30.45314 -28.03412 -26.78182 -25.73685 -23.38466 -22.80810 -22.62846 -21.43619 -19.95853 -19.16074 -18.87903 -17.93745 -17.44547 -16.70351 -16.61095 -16.06068 -15.47864 -15.24494 -15.03078 -14.59337 -14.56753 -14.34587 -14.07716 -13.88512 -13.60890 -13.41091 -12.84274 -12.73385 -12.67222 -12.27271 -12.24984 -12.00506 -11.87059 -11.66801 -11.58159 -11.48232 -11.14863 -10.63893 -10.41489 -10.12355 -9.73337 -8.88271 -7.70560 -5.16565 0.54791 1.26580 1.49107 1.51574 1.59789 1.81552 2.27159 2.37092 2.55297 3.34730 3.39997 3.65418 3.77996 3.84289 4.06851 4.10671 4.22892 4.35264 4.48017 4.49774 4.75457 4.79193 4.80814 4.84068 4.89668 4.98458 5.07510 5.12787 5.17795 5.33448 5.40965 5.48281 5.55103 5.62741 5.80801 6.22280 6.30544 6.55295 6.86560 7.15107 7.18804 7.88037 8.32014 9.29001 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030789 B = 0.004385 C = 0.004074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.199491 B = 6384.150078 C = 6871.394256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.192 3.808 2 N -0.619 5.619 3 C -0.243 4.243 4 H 0.086 0.914 5 C -0.065 4.065 6 N -0.951 5.951 7 Si 0.975 3.025 8 H -0.291 1.291 9 H -0.297 1.297 10 H -0.263 1.263 11 C 0.157 3.843 12 C 0.123 3.877 13 H 0.041 0.959 14 C -0.104 4.104 15 C -0.123 4.123 16 C 0.110 3.890 17 N -0.601 5.601 18 C 0.600 3.400 19 O -0.579 6.579 20 C -0.037 4.037 21 C -0.213 4.213 22 C 0.019 3.981 23 N -0.365 5.365 24 H 0.466 0.534 25 N -0.264 5.264 26 H 0.002 0.998 27 H 0.024 0.976 28 H 0.012 0.988 29 H 0.243 0.757 30 H 0.050 0.950 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.098 0.902 37 H 0.074 0.926 38 H 0.157 0.843 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.607 -20.807 6.425 26.221 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.344 5.344 3 C -0.373 4.373 4 H 0.104 0.896 5 C -0.258 4.258 6 N -0.601 5.601 7 Si 0.804 3.196 8 H -0.218 1.218 9 H -0.224 1.224 10 H -0.187 1.187 11 C 0.029 3.971 12 C 0.018 3.982 13 H 0.059 0.941 14 C -0.142 4.142 15 C -0.161 4.161 16 C -0.012 4.012 17 N -0.334 5.334 18 C 0.388 3.612 19 O -0.457 6.457 20 C -0.196 4.196 21 C -0.241 4.241 22 C -0.126 4.126 23 N -0.082 5.082 24 H 0.315 0.685 25 N -0.102 5.102 26 H 0.021 0.979 27 H 0.042 0.958 28 H 0.030 0.970 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.096 0.904 35 H 0.129 0.871 36 H 0.116 0.884 37 H 0.092 0.908 38 H 0.174 0.826 39 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 14.711 -20.137 6.675 25.816 hybrid contribution -0.656 0.605 -0.665 1.113 sum 14.055 -19.532 6.009 24.802 Atomic orbital electron populations 1.20634 0.82395 0.92921 0.99310 1.44168 1.02241 1.01389 1.86552 1.19683 0.91765 0.84157 1.41664 0.89600 1.25720 0.96558 1.01215 1.02279 1.70453 1.06551 1.24980 1.58104 0.85123 0.77929 0.79127 0.77437 1.21783 1.22420 1.18700 1.20983 0.95476 0.86568 0.94083 1.22269 0.96001 0.81391 0.98585 0.94120 1.22412 0.97573 0.96454 0.97768 1.22864 1.01812 0.94270 0.97160 1.22531 0.84495 1.00088 0.94040 1.48564 1.23797 1.08072 1.52931 1.17128 0.84504 0.81811 0.77735 1.90769 1.21594 1.84680 1.48663 1.21669 0.94250 0.95896 1.07762 1.22035 1.02991 0.91747 1.07331 1.23519 0.88500 1.01192 0.99342 1.43560 1.17980 1.06184 1.40471 0.68546 1.73549 1.12907 1.02651 1.21091 0.97911 0.95792 0.96966 0.94714 0.93143 0.95569 0.91537 0.91051 0.90424 0.87133 0.88375 0.90801 0.82551 0.74811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 10.92 8.99 127.77 1.15 12.07 16 2 N -0.62 -33.79 2.83 -726.93 -2.05 -35.84 16 3 C -0.24 -13.58 9.00 84.03 0.76 -12.83 16 4 H 0.09 4.49 7.15 -2.91 -0.02 4.47 16 5 C -0.07 -3.75 5.46 84.86 0.46 -3.29 16 6 N -0.95 -58.39 9.45 21.65 0.20 -58.18 16 7 Si 0.98 45.93 29.56 68.60 2.03 47.96 16 8 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 9 H -0.30 -14.17 7.11 99.48 0.71 -13.47 16 10 H -0.26 -11.43 7.11 99.48 0.71 -10.72 16 11 C 0.16 7.38 5.05 86.38 0.44 7.81 16 12 C 0.12 5.00 3.08 45.35 0.14 5.14 16 13 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 14 C -0.10 -3.58 5.78 31.79 0.18 -3.39 16 15 C -0.12 -2.98 7.09 31.99 0.23 -2.75 16 16 C 0.11 2.83 5.99 86.86 0.52 3.35 16 17 N -0.60 -21.01 3.06 -791.59 -2.43 -23.44 16 18 C 0.60 22.48 7.57 86.75 0.66 23.14 16 19 O -0.58 -26.43 16.11 -3.93 -0.06 -26.50 16 20 C -0.04 -1.05 6.96 42.46 0.30 -0.75 16 21 C -0.21 -4.72 10.81 22.41 0.24 -4.48 16 22 C 0.02 0.22 12.02 83.54 1.00 1.22 16 23 N -0.36 -4.24 6.83 -57.51 -0.39 -4.63 16 24 H 0.47 1.11 8.96 -220.00 -1.97 -0.87 16 25 N -0.26 -5.65 9.49 -48.18 -0.46 -6.11 16 26 H 0.00 0.13 7.90 -2.39 -0.02 0.11 16 27 H 0.02 1.43 7.01 -2.39 -0.02 1.41 16 28 H 0.01 0.73 7.07 -2.39 -0.02 0.72 16 29 H 0.24 14.54 8.31 -92.71 -0.77 13.77 16 30 H 0.05 2.30 7.88 -2.38 -0.02 2.28 16 31 H 0.03 1.33 6.83 -2.39 -0.02 1.31 16 32 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 33 H 0.07 2.57 6.86 -2.39 -0.02 2.55 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.10 2.23 6.52 -2.38 -0.02 2.21 16 37 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.16 3.52 8.06 -2.91 -0.02 3.50 16 39 H 0.24 0.10 8.06 -2.91 -0.02 0.08 16 Total: -1.00 -79.24 317.76 2.01 -77.23 By element: Atomic # 1 Polarization: 5.17 SS G_CDS: -0.91 Total: 4.27 kcal Atomic # 6 Polarization: 19.17 SS G_CDS: 6.07 Total: 25.24 kcal Atomic # 7 Polarization: -123.08 SS G_CDS: -5.13 Total: -128.20 kcal Atomic # 8 Polarization: -26.43 SS G_CDS: -0.06 Total: -26.50 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -79.24 2.01 -77.23 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717364022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.451 kcal (2) G-P(sol) polarization free energy of solvation -79.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.230 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds