Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36935 * 120.00359 * 2 1 4 4 H 1.08000 * 120.00523 * 203.10557 * 3 2 1 5 5 C 1.38817 * 119.99781 * 23.09644 * 3 2 1 6 6 N 1.31611 * 119.99896 * 14.86848 * 5 3 2 7 7 Si 1.86799 * 119.99960 * 194.86401 * 5 3 2 8 8 H 1.48496 * 109.47065 * 90.00401 * 7 5 3 9 9 H 1.48498 * 109.46972 * 210.00284 * 7 5 3 10 10 H 1.48500 * 109.47362 * 330.00425 * 7 5 3 11 11 C 1.46502 * 120.00106 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47274 * 264.65015 * 11 2 1 13 13 H 1.08994 * 109.87548 * 303.94024 * 12 11 2 14 14 C 1.54324 * 109.88520 * 64.95813 * 12 11 2 15 15 C 1.55152 * 103.10379 * 141.52065 * 14 12 11 16 16 C 1.55124 * 101.48605 * 324.71564 * 15 14 12 17 17 N 1.47026 * 109.88431 * 182.76400 * 12 11 2 18 18 C 1.34780 * 125.64730 * 61.60137 * 17 12 11 19 19 O 1.21570 * 119.99922 * 5.22299 * 18 17 12 20 20 C 1.47704 * 119.99968 * 185.21861 * 18 17 12 21 21 C 1.41504 * 126.51554 * 179.71332 * 20 18 17 22 22 C 1.35374 * 105.50195 * 179.90418 * 21 20 18 23 23 N 1.35030 * 107.22710 * 0.35657 * 22 21 20 24 24 H 0.97002 * 124.88449 * 179.76186 * 23 22 21 25 25 N 1.28474 * 110.23262 * 359.76512 * 23 22 21 26 26 H 1.08999 * 109.47092 * 272.61435 * 1 2 3 27 27 H 1.09005 * 109.47018 * 32.60777 * 1 2 3 28 28 H 1.09005 * 109.47521 * 152.61004 * 1 2 3 29 29 H 0.97000 * 120.00009 * 179.97438 * 6 5 3 30 30 H 1.09007 * 109.47091 * 144.64421 * 11 2 1 31 31 H 1.09002 * 109.46747 * 24.65241 * 11 2 1 32 32 H 1.09001 * 110.71750 * 259.97595 * 14 12 11 33 33 H 1.09003 * 110.71598 * 23.06458 * 14 12 11 34 34 H 1.08995 * 111.00657 * 82.66545 * 15 14 12 35 35 H 1.09003 * 110.99969 * 206.51586 * 15 14 12 36 36 H 1.08995 * 110.21211 * 277.95713 * 16 15 14 37 37 H 1.09004 * 110.51176 * 155.75084 * 16 15 14 38 38 H 1.08001 * 127.25417 * 0.02562 * 21 20 18 39 39 H 1.07996 * 126.38156 * 180.08901 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1647 1.2234 -0.3670 5 6 1.5391 2.3399 0.4716 6 7 0.4332 2.2567 1.1803 7 14 2.2871 4.0108 0.1005 8 1 1.7270 4.5323 -1.1720 9 1 1.9684 4.9519 1.2041 10 1 3.7607 3.8766 -0.0255 11 6 2.1975 -1.2687 0.0006 12 6 2.5690 -1.6425 1.4369 13 1 3.1378 -0.8335 1.8950 14 6 1.2897 -1.9141 2.2562 15 6 1.6937 -3.1151 3.1515 16 6 2.6266 -3.9095 2.2002 17 7 3.3617 -2.8807 1.4423 18 6 4.5615 -3.0479 0.8513 19 8 5.1198 -2.1016 0.3308 20 6 5.1979 -4.3807 0.8360 21 6 6.4441 -4.7120 0.2534 22 6 6.6126 -6.0347 0.4872 23 7 5.5245 -6.4633 1.1622 24 1 5.3784 -7.3757 1.4573 25 7 4.7104 -5.4887 1.3575 26 1 -0.3633 0.0469 1.0266 27 1 -0.3633 0.8657 -0.5538 28 1 -0.3634 -0.9125 -0.4728 29 1 0.0067 3.0630 1.5101 30 1 3.1050 -1.1646 -0.5942 31 1 1.5702 -2.0506 -0.4278 32 1 1.0312 -1.0483 2.8658 33 1 0.4617 -2.1833 1.6004 34 1 2.2345 -2.7785 4.0360 35 1 0.8209 -3.7055 3.4303 36 1 2.0365 -4.5290 1.5249 37 1 3.3195 -4.5267 2.7722 38 1 7.1197 -4.0489 -0.2665 39 1 7.4576 -6.6360 0.1858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717364023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 76.454000 kcal Electronic energy + Delta-G solvation = -22164.292143 eV Core-core repulsion = 18916.855936 eV Total energy + Delta-G solvation = -3247.436207 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.67311 -39.49838 -37.04068 -35.16230 -32.22941 -31.35198 -31.17376 -30.47172 -28.83077 -25.94070 -25.06137 -24.34536 -22.04560 -21.73934 -20.96618 -20.13064 -18.80849 -18.14453 -16.71401 -16.47932 -16.03612 -15.55658 -14.86207 -14.42148 -13.80591 -13.74423 -13.58231 -13.29604 -13.26621 -12.97723 -12.78479 -12.40262 -11.77608 -11.67830 -11.26493 -11.13368 -10.77407 -10.60978 -10.48211 -10.43279 -10.21815 -10.00948 -9.85086 -9.65595 -9.56565 -9.45422 -9.29729 -8.45253 -8.14243 -6.62170 -5.63125 -3.06218 1.62857 2.09957 2.74044 3.39287 3.48729 3.54022 3.57770 3.68636 4.43880 4.62952 4.71571 4.99367 5.00809 5.34829 5.36117 5.52403 5.57363 5.67613 5.75331 5.81767 5.93786 6.01973 6.10081 6.27123 6.29335 6.46031 6.56523 6.66281 6.77910 6.82021 6.88184 7.00187 7.20069 7.43387 7.72837 7.77021 7.96365 7.99671 8.51075 8.59675 9.35850 9.98385 10.47607 11.42805 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025700 B = 0.004755 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.220410 B = 5887.627441 C = 6598.189777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.594 5.594 3 C -0.248 4.248 4 H 0.070 0.930 5 C 0.002 3.998 6 N -0.909 5.909 7 Si 0.902 3.098 8 H -0.289 1.289 9 H -0.292 1.292 10 H -0.279 1.279 11 C 0.147 3.853 12 C 0.117 3.883 13 H 0.080 0.920 14 C -0.110 4.110 15 C -0.138 4.138 16 C 0.108 3.892 17 N -0.599 5.599 18 C 0.606 3.394 19 O -0.525 6.525 20 C 0.001 3.999 21 C -0.181 4.181 22 C -0.020 4.020 23 N -0.390 5.390 24 H 0.444 0.556 25 N -0.260 5.260 26 H 0.029 0.971 27 H 0.043 0.957 28 H -0.005 1.005 29 H 0.251 0.749 30 H 0.053 0.947 31 H 0.037 0.963 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.080 0.920 38 H 0.163 0.837 39 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.924 -20.262 2.599 21.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.317 5.317 3 C -0.377 4.377 4 H 0.088 0.912 5 C -0.196 4.196 6 N -0.554 5.554 7 Si 0.732 3.268 8 H -0.216 1.216 9 H -0.219 1.219 10 H -0.204 1.204 11 C 0.019 3.981 12 C 0.012 3.988 13 H 0.098 0.902 14 C -0.148 4.148 15 C -0.177 4.177 16 C -0.015 4.015 17 N -0.333 5.333 18 C 0.392 3.608 19 O -0.400 6.400 20 C -0.161 4.161 21 C -0.209 4.209 22 C -0.164 4.164 23 N -0.104 5.104 24 H 0.287 0.713 25 N -0.096 5.096 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.014 0.986 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.098 0.902 38 H 0.180 0.820 39 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 6.271 -19.954 2.893 21.115 hybrid contribution 0.994 0.626 -0.292 1.210 sum 7.265 -19.328 2.601 20.811 Atomic orbital electron populations 1.20819 0.82655 0.95722 0.99015 1.43925 1.01722 1.00560 1.85492 1.19279 0.98542 0.85248 1.34670 0.91241 1.24969 0.98165 0.98365 0.98119 1.70062 1.20835 1.27030 1.37489 0.86279 0.78911 0.84265 0.77336 1.21619 1.21898 1.20400 1.21143 0.96104 0.88222 0.92666 1.22695 0.90691 0.84642 1.00750 0.90225 1.22542 0.96789 0.97768 0.97664 1.22884 0.99021 0.97729 0.98021 1.22354 0.94681 0.90688 0.93803 1.48560 1.18056 1.14661 1.52028 1.16494 0.79847 0.85369 0.79117 1.90836 1.62743 1.40128 1.46256 1.22162 0.96537 0.93153 1.04221 1.21846 0.98124 0.95017 1.05877 1.22905 0.94601 0.96502 1.02397 1.43424 1.14047 1.10932 1.41978 0.71259 1.73684 1.18864 0.95900 1.21151 0.95292 0.93833 0.98616 0.93940 0.92866 0.94489 0.89756 0.91080 0.91213 0.90473 0.91893 0.90155 0.81987 0.80013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.05 7.98 59.84 0.48 4.53 16 2 N -0.59 -15.58 2.77 -181.12 -0.50 -16.08 16 3 C -0.25 -7.15 9.64 -15.06 -0.15 -7.30 16 4 H 0.07 2.05 7.87 -52.49 -0.41 1.64 16 5 C 0.00 0.05 5.04 -17.43 -0.09 -0.04 16 6 N -0.91 -26.73 10.84 55.49 0.60 -26.13 16 7 Si 0.90 22.80 29.58 -169.99 -5.03 17.77 16 8 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 9 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 C 0.15 3.37 5.12 -4.04 -0.02 3.35 16 12 C 0.12 2.41 3.08 -66.95 -0.21 2.21 16 13 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 14 C -0.11 -1.96 5.60 -24.90 -0.14 -2.10 16 15 C -0.14 -1.92 7.11 -24.47 -0.17 -2.09 16 16 C 0.11 1.54 5.99 -2.41 -0.01 1.53 16 17 N -0.60 -10.82 3.07 -164.04 -0.50 -11.33 16 18 C 0.61 11.49 7.59 -12.39 -0.09 11.39 16 19 O -0.53 -11.85 16.12 5.30 0.09 -11.76 16 20 C 0.00 0.01 6.96 -82.77 -0.58 -0.57 16 21 C -0.18 -2.21 10.81 -39.36 -0.43 -2.64 16 22 C -0.02 -0.16 12.02 -17.17 -0.21 -0.37 16 23 N -0.39 -3.20 6.83 30.47 0.21 -2.99 16 24 H 0.44 1.76 8.96 -190.43 -1.71 0.05 16 25 N -0.26 -3.22 9.49 33.42 0.32 -2.90 16 26 H 0.03 0.75 7.30 -51.93 -0.38 0.37 16 27 H 0.04 1.17 7.23 -51.93 -0.38 0.79 16 28 H 0.00 -0.10 7.82 -51.93 -0.41 -0.51 16 29 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 30 H 0.05 1.33 6.88 -51.93 -0.36 0.97 16 31 H 0.04 0.79 7.74 -51.93 -0.40 0.39 16 32 H 0.08 1.68 8.14 -51.93 -0.42 1.26 16 33 H 0.07 1.27 7.26 -51.93 -0.38 0.89 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 36 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.08 1.07 6.53 -51.93 -0.34 0.73 16 38 H 0.16 1.90 8.06 -52.49 -0.42 1.47 16 39 H 0.18 0.67 8.06 -52.49 -0.42 0.25 16 LS Contribution 319.68 15.07 4.82 4.82 Total: -1.00 -34.62 319.68 -8.46 -43.09 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: -6.85 Total: -2.39 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -1.61 Total: 7.91 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.12 Total: -59.43 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.76 kcal Atomic # 14 Polarization: 22.80 SS G_CDS: -5.03 Total: 17.77 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.62 -8.46 -43.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717364023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.541 kcal (2) G-P(sol) polarization free energy of solvation -34.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds