Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36935 * 120.00359 * 2 1 4 4 H 1.08000 * 120.00523 * 203.10557 * 3 2 1 5 5 C 1.38817 * 119.99781 * 23.09644 * 3 2 1 6 6 N 1.31611 * 119.99896 * 14.86848 * 5 3 2 7 7 Si 1.86799 * 119.99960 * 194.86401 * 5 3 2 8 8 H 1.48496 * 109.47065 * 90.00401 * 7 5 3 9 9 H 1.48498 * 109.46972 * 210.00284 * 7 5 3 10 10 H 1.48500 * 109.47362 * 330.00425 * 7 5 3 11 11 C 1.46502 * 120.00106 * 179.97438 * 2 1 3 12 12 C 1.52993 * 109.47274 * 264.65015 * 11 2 1 13 13 H 1.08994 * 109.87548 * 303.94024 * 12 11 2 14 14 C 1.54324 * 109.88520 * 64.95813 * 12 11 2 15 15 C 1.55152 * 103.10379 * 141.52065 * 14 12 11 16 16 C 1.55124 * 101.48605 * 324.71564 * 15 14 12 17 17 N 1.47026 * 109.88431 * 182.76400 * 12 11 2 18 18 C 1.34780 * 125.64730 * 61.60137 * 17 12 11 19 19 O 1.21570 * 119.99922 * 5.22299 * 18 17 12 20 20 C 1.47704 * 119.99968 * 185.21861 * 18 17 12 21 21 C 1.41504 * 126.51554 * 179.71332 * 20 18 17 22 22 C 1.35374 * 105.50195 * 179.90418 * 21 20 18 23 23 N 1.35030 * 107.22710 * 0.35657 * 22 21 20 24 24 H 0.97002 * 124.88449 * 179.76186 * 23 22 21 25 25 N 1.28474 * 110.23262 * 359.76512 * 23 22 21 26 26 H 1.08999 * 109.47092 * 272.61435 * 1 2 3 27 27 H 1.09005 * 109.47018 * 32.60777 * 1 2 3 28 28 H 1.09005 * 109.47521 * 152.61004 * 1 2 3 29 29 H 0.97000 * 120.00009 * 179.97438 * 6 5 3 30 30 H 1.09007 * 109.47091 * 144.64421 * 11 2 1 31 31 H 1.09002 * 109.46747 * 24.65241 * 11 2 1 32 32 H 1.09001 * 110.71750 * 259.97595 * 14 12 11 33 33 H 1.09003 * 110.71598 * 23.06458 * 14 12 11 34 34 H 1.08995 * 111.00657 * 82.66545 * 15 14 12 35 35 H 1.09003 * 110.99969 * 206.51586 * 15 14 12 36 36 H 1.08995 * 110.21211 * 277.95713 * 16 15 14 37 37 H 1.09004 * 110.51176 * 155.75084 * 16 15 14 38 38 H 1.08001 * 127.25417 * 0.02562 * 21 20 18 39 39 H 1.07996 * 126.38156 * 180.08901 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.1647 1.2234 -0.3670 5 6 1.5391 2.3399 0.4716 6 7 0.4332 2.2567 1.1803 7 14 2.2871 4.0108 0.1005 8 1 1.7270 4.5323 -1.1720 9 1 1.9684 4.9519 1.2041 10 1 3.7607 3.8766 -0.0255 11 6 2.1975 -1.2687 0.0006 12 6 2.5690 -1.6425 1.4369 13 1 3.1378 -0.8335 1.8950 14 6 1.2897 -1.9141 2.2562 15 6 1.6937 -3.1151 3.1515 16 6 2.6266 -3.9095 2.2002 17 7 3.3617 -2.8807 1.4423 18 6 4.5615 -3.0479 0.8513 19 8 5.1198 -2.1016 0.3308 20 6 5.1979 -4.3807 0.8360 21 6 6.4441 -4.7120 0.2534 22 6 6.6126 -6.0347 0.4872 23 7 5.5245 -6.4633 1.1622 24 1 5.3784 -7.3757 1.4573 25 7 4.7104 -5.4887 1.3575 26 1 -0.3633 0.0469 1.0266 27 1 -0.3633 0.8657 -0.5538 28 1 -0.3634 -0.9125 -0.4728 29 1 0.0067 3.0630 1.5101 30 1 3.1050 -1.1646 -0.5942 31 1 1.5702 -2.0506 -0.4278 32 1 1.0312 -1.0483 2.8658 33 1 0.4617 -2.1833 1.6004 34 1 2.2345 -2.7785 4.0360 35 1 0.8209 -3.7055 3.4303 36 1 2.0365 -4.5290 1.5249 37 1 3.3195 -4.5267 2.7722 38 1 7.1197 -4.0489 -0.2665 39 1 7.4576 -6.6360 0.1858 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717364023.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 52.010115 kcal Electronic energy + Delta-G solvation = -22165.352110 eV Core-core repulsion = 18916.855936 eV Total energy + Delta-G solvation = -3248.496174 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.54488 -40.96994 -38.61281 -37.10717 -33.69823 -33.06200 -32.28169 -31.51626 -30.50657 -27.99352 -26.80425 -25.73241 -23.39236 -22.71186 -22.64020 -21.56919 -19.97882 -19.15586 -18.70654 -17.94166 -17.48274 -16.69019 -16.61958 -16.02258 -15.56079 -15.15051 -15.10428 -14.78975 -14.58703 -14.41112 -14.03897 -13.79633 -13.57484 -13.37779 -13.06685 -12.78479 -12.51075 -12.34986 -12.22952 -12.06521 -11.96385 -11.66589 -11.63351 -11.49477 -11.14127 -10.63772 -10.41242 -10.12351 -9.68035 -8.75324 -7.85324 -5.31386 0.55279 1.26477 1.44050 1.44374 1.54505 1.82801 2.28245 2.37484 2.51535 3.27507 3.37071 3.66668 3.77936 3.82838 4.08268 4.10956 4.23280 4.37519 4.46293 4.50341 4.74965 4.80805 4.82678 4.83265 4.90515 5.01109 5.07124 5.12292 5.18102 5.31844 5.34165 5.40183 5.54542 5.63687 5.71212 6.22522 6.32392 6.57939 6.87232 7.14873 7.18054 7.84855 8.28334 9.18016 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025700 B = 0.004755 C = 0.004243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.220410 B = 5887.627441 C = 6598.189777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.178 3.822 2 N -0.608 5.608 3 C -0.266 4.266 4 H 0.050 0.950 5 C -0.041 4.041 6 N -0.927 5.927 7 Si 0.962 3.038 8 H -0.282 1.282 9 H -0.287 1.287 10 H -0.280 1.280 11 C 0.154 3.846 12 C 0.126 3.874 13 H 0.030 0.970 14 C -0.103 4.103 15 C -0.123 4.123 16 C 0.111 3.889 17 N -0.602 5.602 18 C 0.598 3.402 19 O -0.580 6.580 20 C -0.036 4.036 21 C -0.214 4.214 22 C 0.020 3.980 23 N -0.364 5.364 24 H 0.466 0.534 25 N -0.262 5.262 26 H 0.016 0.984 27 H 0.017 0.983 28 H 0.029 0.971 29 H 0.250 0.750 30 H 0.022 0.978 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.155 0.845 39 H 0.236 0.764 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.210 -23.641 3.172 24.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.331 5.331 3 C -0.396 4.396 4 H 0.068 0.932 5 C -0.236 4.236 6 N -0.573 5.573 7 Si 0.791 3.209 8 H -0.208 1.208 9 H -0.213 1.213 10 H -0.205 1.205 11 C 0.027 3.973 12 C 0.020 3.980 13 H 0.048 0.952 14 C -0.141 4.141 15 C -0.161 4.161 16 C -0.011 4.011 17 N -0.334 5.334 18 C 0.386 3.614 19 O -0.458 6.458 20 C -0.195 4.195 21 C -0.242 4.242 22 C -0.124 4.124 23 N -0.081 5.081 24 H 0.315 0.685 25 N -0.101 5.101 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.048 0.952 29 H 0.060 0.940 30 H 0.041 0.959 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.133 0.867 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.173 0.827 39 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 6.535 -23.402 3.491 24.547 hybrid contribution 0.985 1.525 -0.489 1.880 sum 7.520 -21.877 3.001 23.327 Atomic orbital electron populations 1.20621 0.81828 0.96126 0.98116 1.44046 1.02359 1.00869 1.85864 1.19325 0.98184 0.86958 1.35134 0.93190 1.25620 0.98779 1.01235 0.98014 1.70181 1.21596 1.27663 1.37856 0.85348 0.78000 0.80270 0.77325 1.20840 1.21317 1.20515 1.21064 0.94839 0.87535 0.93908 1.22213 0.91835 0.84971 0.98989 0.95164 1.22389 0.95159 0.98753 0.97791 1.22894 1.00261 0.95893 0.97018 1.22564 0.94783 0.89895 0.93833 1.48601 1.18046 1.14469 1.52328 1.17167 0.79664 0.86624 0.77953 1.90787 1.64163 1.42395 1.48492 1.21654 0.98122 0.92122 1.07609 1.22031 0.97601 0.97238 1.07347 1.23511 0.94823 0.94955 0.99157 1.43556 1.13199 1.11221 1.40158 0.68499 1.73548 1.19676 0.95795 1.21049 0.96549 0.96437 0.95235 0.94032 0.95920 0.92451 0.92361 0.90547 0.91021 0.86678 0.90313 0.88518 0.82705 0.74743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.99 7.98 127.77 1.02 10.01 16 2 N -0.61 -33.12 2.77 -726.93 -2.01 -35.13 16 3 C -0.27 -16.07 9.64 84.04 0.81 -15.26 16 4 H 0.05 3.15 7.87 -2.91 -0.02 3.13 16 5 C -0.04 -2.39 5.04 84.86 0.43 -1.97 16 6 N -0.93 -55.80 10.84 21.65 0.23 -55.56 16 7 Si 0.96 48.09 29.58 68.60 2.03 50.12 16 8 H -0.28 -13.71 7.11 99.48 0.71 -13.00 16 9 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 10 H -0.28 -13.92 7.11 99.48 0.71 -13.21 16 11 C 0.15 7.38 5.12 86.38 0.44 7.82 16 12 C 0.13 5.44 3.08 45.34 0.14 5.58 16 13 H 0.03 1.59 8.14 -2.39 -0.02 1.57 16 14 C -0.10 -3.69 5.60 31.78 0.18 -3.51 16 15 C -0.12 -3.14 7.11 32.06 0.23 -2.91 16 16 C 0.11 2.95 5.99 86.93 0.52 3.47 16 17 N -0.60 -22.17 3.07 -791.17 -2.43 -24.60 16 18 C 0.60 23.63 7.59 86.74 0.66 24.29 16 19 O -0.58 -28.26 16.12 -3.94 -0.06 -28.32 16 20 C -0.04 -1.07 6.96 42.46 0.30 -0.78 16 21 C -0.21 -4.99 10.81 22.41 0.24 -4.75 16 22 C 0.02 0.24 12.02 83.54 1.00 1.25 16 23 N -0.36 -4.41 6.83 -57.51 -0.39 -4.80 16 24 H 0.47 1.24 8.96 -219.99 -1.97 -0.73 16 25 N -0.26 -5.81 9.49 -48.18 -0.46 -6.26 16 26 H 0.02 0.86 7.30 -2.39 -0.02 0.85 16 27 H 0.02 0.94 7.23 -2.38 -0.02 0.92 16 28 H 0.03 1.27 7.82 -2.38 -0.02 1.25 16 29 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 30 H 0.02 1.21 6.88 -2.38 -0.02 1.19 16 31 H 0.06 2.47 7.74 -2.39 -0.02 2.45 16 32 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 33 H 0.08 2.65 7.26 -2.39 -0.02 2.64 16 34 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 36 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 37 H 0.10 2.30 6.53 -2.38 -0.02 2.29 16 38 H 0.16 3.71 8.06 -2.91 -0.02 3.68 16 39 H 0.24 0.23 8.06 -2.91 -0.02 0.20 16 Total: -1.00 -81.42 319.68 1.97 -79.45 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -0.91 Total: 1.87 kcal Atomic # 6 Polarization: 17.27 SS G_CDS: 5.97 Total: 23.24 kcal Atomic # 7 Polarization: -121.31 SS G_CDS: -5.05 Total: -126.36 kcal Atomic # 8 Polarization: -28.26 SS G_CDS: -0.06 Total: -28.32 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.03 Total: 50.12 kcal Total: -81.42 1.97 -79.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717364023.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.463 kcal (2) G-P(sol) polarization free energy of solvation -81.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds