Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99730 * 2 1 4 4 C 1.53000 * 109.47322 * 270.00568 * 3 2 1 5 5 N 1.46495 * 109.47137 * 180.02562 * 4 3 2 6 6 C 1.36930 * 120.00269 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00286 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00334 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00123 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47066 * 89.99504 * 10 8 6 12 12 H 1.48497 * 109.47259 * 209.99675 * 10 8 6 13 13 H 1.48506 * 109.46785 * 330.00063 * 10 8 6 14 14 C 1.34775 * 120.00013 * 180.02562 * 2 1 3 15 15 O 1.21611 * 119.99491 * 184.54445 * 14 2 1 16 16 C 1.47425 * 120.00277 * 4.54433 * 14 2 1 17 17 C 1.38047 * 126.41161 * 322.73955 * 16 14 2 18 18 N 1.34260 * 107.41245 * 180.25499 * 17 16 14 19 19 H 0.97003 * 125.74991 * 179.77533 * 18 17 16 20 20 N 1.39931 * 108.49708 * 359.76954 * 18 17 16 21 21 C 1.30450 * 108.89408 * 0.02562 * 20 18 17 22 22 C 1.50701 * 125.98873 * 179.97438 * 21 20 18 23 23 C 1.52996 * 117.49486 * 300.02002 * 22 21 20 24 24 C 1.53000 * 60.03194 * 107.48185 * 23 22 21 25 25 H 1.09005 * 109.46645 * 264.80357 * 1 2 3 26 26 H 1.09000 * 109.47697 * 24.80564 * 1 2 3 27 27 H 1.08998 * 109.47510 * 144.80968 * 1 2 3 28 28 H 1.08998 * 109.46855 * 30.01011 * 3 2 1 29 29 H 1.08997 * 109.46879 * 150.00316 * 3 2 1 30 30 H 1.09008 * 109.46801 * 299.99776 * 4 3 2 31 31 H 1.08995 * 109.46846 * 59.99938 * 4 3 2 32 32 H 0.97003 * 119.99789 * 359.97438 * 5 4 3 33 33 H 0.96998 * 120.00200 * 179.97438 * 9 8 6 34 34 H 1.07999 * 126.29405 * 0.02562 * 17 16 14 35 35 H 1.08999 * 115.56282 * 154.33199 * 22 21 20 36 36 H 1.09007 * 117.49939 * 214.97528 * 23 22 21 37 37 H 1.08992 * 117.50532 * 359.97438 * 23 22 21 38 38 H 1.08998 * 117.50117 * 107.49795 * 24 23 22 39 39 H 1.08999 * 117.49465 * 252.52539 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4523 1.7106 -1.4425 5 7 3.1853 2.9790 -1.4424 6 6 3.5281 3.5718 -2.6282 7 1 3.2585 3.1040 -3.5636 8 6 4.2221 4.7740 -2.6282 9 7 4.5521 5.3435 -3.7680 10 14 4.6891 5.5828 -1.0104 11 1 6.0254 5.0970 -0.5817 12 1 4.7317 7.0565 -1.1880 13 1 3.6816 5.2377 0.0245 14 6 2.1389 -1.1672 -0.0005 15 8 3.3521 -1.1688 0.0829 16 6 1.4053 -2.4419 -0.1022 17 6 0.1868 -2.7346 0.4769 18 7 -0.1232 -3.9978 0.1439 19 1 -0.9239 -4.4746 0.4132 20 7 0.9032 -4.5103 -0.6573 21 6 1.8167 -3.5921 -0.8123 22 6 3.0902 -3.7348 -1.6053 23 6 4.0704 -4.8284 -1.1767 24 6 3.2533 -4.9945 -2.4595 25 1 -0.3633 -0.0931 1.0235 26 1 -0.3634 0.9328 -0.4311 27 1 -0.3634 -0.8398 -0.5922 28 1 1.6084 2.0283 0.5140 29 1 3.1499 1.1385 0.5138 30 1 3.0415 0.9510 -1.9564 31 1 1.4999 1.8409 -1.9562 32 1 3.4278 3.3990 -0.6023 33 1 5.0367 6.1837 -3.7679 34 1 -0.4061 -2.0709 1.0887 35 1 3.5098 -2.8062 -1.9923 36 1 5.1351 -4.6194 -1.2817 37 1 3.7945 -5.4444 -0.3209 38 1 3.7803 -4.8946 -3.4084 39 1 2.4395 -5.7194 -2.4475 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713649429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = 90.136650 kcal Electronic energy + Delta-G solvation = -21312.032950 eV Core-core repulsion = 18065.190067 eV Total energy + Delta-G solvation = -3246.842883 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -41.71974 -39.26061 -37.17406 -35.90169 -34.47763 -31.80465 -31.57750 -30.61379 -28.38316 -26.66713 -24.28343 -24.02043 -22.48063 -22.19673 -21.26405 -19.96404 -19.35790 -17.91698 -17.54968 -16.62150 -15.86471 -15.69824 -15.44865 -14.93409 -14.60918 -14.32282 -13.79629 -13.72252 -13.58351 -13.24161 -12.84520 -12.62896 -12.26711 -12.00251 -11.61187 -11.55122 -11.37181 -11.13424 -11.05667 -11.04662 -10.70597 -10.43487 -10.14229 -9.76615 -9.56502 -9.46836 -8.93542 -8.86045 -8.51976 -7.20810 -5.73026 -3.09067 1.34207 1.97350 2.40882 2.99607 3.29941 3.40543 3.44617 3.48871 3.89900 4.16155 4.35873 4.62949 4.68739 4.81109 4.94881 5.00463 5.06135 5.22022 5.22264 5.44381 5.49122 5.53210 5.59007 5.61668 5.65744 5.77137 5.79696 5.99952 6.06761 6.09234 6.17453 6.50101 6.68454 6.82299 6.86100 7.29249 7.50771 8.02524 8.34629 8.45375 9.24105 9.96252 10.15674 11.45376 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.003923 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.894423 B = 7135.838559 C = 7816.916107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.609 5.609 3 C 0.105 3.895 4 C 0.146 3.854 5 N -0.754 5.754 6 C -0.242 4.242 7 H 0.090 0.910 8 C 0.004 3.996 9 N -0.935 5.935 10 Si 0.886 3.114 11 H -0.283 1.283 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.589 3.411 15 O -0.526 6.526 16 C -0.271 4.271 17 C 0.095 3.905 18 N -0.464 5.464 19 H 0.443 0.557 20 N -0.297 5.297 21 C 0.165 3.835 22 C -0.083 4.083 23 C -0.155 4.155 24 C -0.168 4.168 25 H 0.053 0.947 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.076 0.924 29 H 0.086 0.914 30 H 0.031 0.969 31 H 0.026 0.974 32 H 0.361 0.639 33 H 0.259 0.741 34 H 0.189 0.811 35 H 0.131 0.869 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.100 0.900 39 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.518 -20.330 10.592 26.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.342 5.342 3 C -0.017 4.017 4 C 0.018 3.982 5 N -0.400 5.400 6 C -0.372 4.372 7 H 0.108 0.892 8 C -0.191 4.191 9 N -0.583 5.583 10 Si 0.716 3.284 11 H -0.209 1.209 12 H -0.217 1.217 13 H -0.203 1.203 14 C 0.377 3.623 15 O -0.402 6.402 16 C -0.286 4.286 17 C -0.057 4.057 18 N -0.169 5.169 19 H 0.288 0.712 20 N -0.120 5.120 21 C -0.002 4.002 22 C -0.103 4.103 23 C -0.193 4.193 24 C -0.205 4.205 25 H 0.071 0.929 26 H 0.097 0.903 27 H 0.089 0.911 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.049 0.951 31 H 0.044 0.956 32 H 0.193 0.807 33 H 0.069 0.931 34 H 0.205 0.795 35 H 0.148 0.852 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.119 0.881 39 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -12.202 -21.461 10.113 26.679 hybrid contribution -0.124 1.441 1.489 2.076 sum -12.326 -20.020 11.601 26.217 Atomic orbital electron populations 1.21991 0.80158 1.03923 1.00881 1.47599 1.06691 1.06003 1.73950 1.21729 0.97650 0.83260 0.99074 1.20900 0.95387 0.88591 0.93319 1.42559 1.68750 1.23218 1.05454 1.19036 1.29659 1.02859 0.85680 0.89246 1.24666 1.00464 0.97614 0.96392 1.69703 1.44946 1.19695 1.23930 0.86527 0.78640 0.78896 0.84346 1.20943 1.21732 1.20343 1.17304 0.86621 0.82215 0.76189 1.90810 1.13358 1.86942 1.49096 1.20216 0.98356 0.97597 1.12391 1.23326 0.95902 0.87667 0.98757 1.46050 1.19823 1.10746 1.40274 0.71242 1.77078 0.98467 1.21819 1.14631 1.21389 0.94250 0.89549 0.95044 1.20384 0.92141 0.95909 1.01905 1.22945 0.97353 1.00379 0.98599 1.23035 1.03108 0.98985 0.95361 0.92898 0.90305 0.91084 0.90551 0.89535 0.95069 0.95614 0.80663 0.93058 0.79468 0.85159 0.87886 0.88827 0.88121 0.88144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.65 9.02 59.85 0.54 1.20 16 2 N -0.61 -8.30 2.87 -182.85 -0.53 -8.82 16 3 C 0.11 1.71 5.53 -4.04 -0.02 1.69 16 4 C 0.15 2.99 6.58 -4.04 -0.03 2.96 16 5 N -0.75 -18.60 5.41 -59.91 -0.32 -18.93 16 6 C -0.24 -7.09 10.47 -15.06 -0.16 -7.25 16 7 H 0.09 2.80 8.06 -52.49 -0.42 2.38 16 8 C 0.00 0.13 5.50 -17.43 -0.10 0.03 16 9 N -0.93 -29.89 13.97 55.49 0.78 -29.12 16 10 Si 0.89 22.46 27.74 -169.99 -4.71 17.74 16 11 H -0.28 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 13 H -0.28 -6.52 6.52 56.52 0.37 -6.16 16 14 C 0.59 9.07 7.47 -12.52 -0.09 8.98 16 15 O -0.53 -10.16 15.94 5.27 0.08 -10.08 16 16 C -0.27 -3.41 5.38 -105.07 -0.57 -3.98 16 17 C 0.10 0.78 9.74 -16.56 -0.16 0.61 16 18 N -0.46 -3.61 7.29 30.85 0.22 -3.39 16 19 H 0.44 1.69 8.96 -182.72 -1.64 0.06 16 20 N -0.30 -3.45 12.22 33.90 0.41 -3.04 16 21 C 0.16 2.16 6.79 -82.02 -0.56 1.60 16 22 C -0.08 -1.08 5.68 -91.74 -0.52 -1.60 16 23 C -0.15 -1.70 10.23 -26.73 -0.27 -1.98 16 24 C -0.17 -1.75 10.14 -26.69 -0.27 -2.02 16 25 H 0.05 0.32 7.32 -51.93 -0.38 -0.06 16 26 H 0.08 0.70 8.03 -51.93 -0.42 0.28 16 27 H 0.07 0.56 5.89 -51.93 -0.31 0.25 16 28 H 0.08 1.08 8.07 -51.93 -0.42 0.67 16 29 H 0.09 1.54 7.36 -51.93 -0.38 1.15 16 30 H 0.03 0.70 8.14 -51.92 -0.42 0.28 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.36 8.56 5.53 -40.82 -0.23 8.34 16 33 H 0.26 7.87 8.31 -40.82 -0.34 7.53 16 34 H 0.19 0.80 6.25 -52.49 -0.33 0.47 16 35 H 0.13 1.89 7.90 -51.93 -0.41 1.48 16 36 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.04 7.90 -51.93 -0.41 0.63 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -37.18 329.02 -7.93 -45.12 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -6.62 Total: 5.31 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.21 Total: 0.25 kcal Atomic # 7 Polarization: -63.86 SS G_CDS: 0.56 Total: -63.30 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.08 Total: -10.08 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -4.71 Total: 17.74 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -37.18 -7.93 -45.12 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713649429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.254 kcal (2) G-P(sol) polarization free energy of solvation -37.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds