Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99730 * 2 1 4 4 C 1.53000 * 109.47322 * 270.00568 * 3 2 1 5 5 N 1.46495 * 109.47137 * 180.02562 * 4 3 2 6 6 C 1.36930 * 120.00269 * 179.97438 * 5 4 3 7 7 H 1.08001 * 120.00138 * 359.97438 * 6 5 4 8 8 C 1.38813 * 120.00286 * 179.97438 * 6 5 4 9 9 N 1.31619 * 120.00334 * 179.97438 * 8 6 5 10 10 Si 1.86801 * 120.00123 * 0.02562 * 8 6 5 11 11 H 1.48502 * 109.47066 * 89.99504 * 10 8 6 12 12 H 1.48497 * 109.47259 * 209.99675 * 10 8 6 13 13 H 1.48506 * 109.46785 * 330.00063 * 10 8 6 14 14 C 1.34775 * 120.00013 * 180.02562 * 2 1 3 15 15 O 1.21611 * 119.99491 * 184.54445 * 14 2 1 16 16 C 1.47425 * 120.00277 * 4.54433 * 14 2 1 17 17 C 1.38047 * 126.41161 * 322.73955 * 16 14 2 18 18 N 1.34260 * 107.41245 * 180.25499 * 17 16 14 19 19 H 0.97003 * 125.74991 * 179.77533 * 18 17 16 20 20 N 1.39931 * 108.49708 * 359.76954 * 18 17 16 21 21 C 1.30450 * 108.89408 * 0.02562 * 20 18 17 22 22 C 1.50701 * 125.98873 * 179.97438 * 21 20 18 23 23 C 1.52996 * 117.49486 * 300.02002 * 22 21 20 24 24 C 1.53000 * 60.03194 * 107.48185 * 23 22 21 25 25 H 1.09005 * 109.46645 * 264.80357 * 1 2 3 26 26 H 1.09000 * 109.47697 * 24.80564 * 1 2 3 27 27 H 1.08998 * 109.47510 * 144.80968 * 1 2 3 28 28 H 1.08998 * 109.46855 * 30.01011 * 3 2 1 29 29 H 1.08997 * 109.46879 * 150.00316 * 3 2 1 30 30 H 1.09008 * 109.46801 * 299.99776 * 4 3 2 31 31 H 1.08995 * 109.46846 * 59.99938 * 4 3 2 32 32 H 0.97003 * 119.99789 * 359.97438 * 5 4 3 33 33 H 0.96998 * 120.00200 * 179.97438 * 9 8 6 34 34 H 1.07999 * 126.29405 * 0.02562 * 17 16 14 35 35 H 1.08999 * 115.56282 * 154.33199 * 22 21 20 36 36 H 1.09007 * 117.49939 * 214.97528 * 23 22 21 37 37 H 1.08992 * 117.50532 * 359.97438 * 23 22 21 38 38 H 1.08998 * 117.50117 * 107.49795 * 24 23 22 39 39 H 1.08999 * 117.49465 * 252.52539 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4523 1.7106 -1.4425 5 7 3.1853 2.9790 -1.4424 6 6 3.5281 3.5718 -2.6282 7 1 3.2585 3.1040 -3.5636 8 6 4.2221 4.7740 -2.6282 9 7 4.5521 5.3435 -3.7680 10 14 4.6891 5.5828 -1.0104 11 1 6.0254 5.0970 -0.5817 12 1 4.7317 7.0565 -1.1880 13 1 3.6816 5.2377 0.0245 14 6 2.1389 -1.1672 -0.0005 15 8 3.3521 -1.1688 0.0829 16 6 1.4053 -2.4419 -0.1022 17 6 0.1868 -2.7346 0.4769 18 7 -0.1232 -3.9978 0.1439 19 1 -0.9239 -4.4746 0.4132 20 7 0.9032 -4.5103 -0.6573 21 6 1.8167 -3.5921 -0.8123 22 6 3.0902 -3.7348 -1.6053 23 6 4.0704 -4.8284 -1.1767 24 6 3.2533 -4.9945 -2.4595 25 1 -0.3633 -0.0931 1.0235 26 1 -0.3634 0.9328 -0.4311 27 1 -0.3634 -0.8398 -0.5922 28 1 1.6084 2.0283 0.5140 29 1 3.1499 1.1385 0.5138 30 1 3.0415 0.9510 -1.9564 31 1 1.4999 1.8409 -1.9562 32 1 3.4278 3.3990 -0.6023 33 1 5.0367 6.1837 -3.7679 34 1 -0.4061 -2.0709 1.0887 35 1 3.5098 -2.8062 -1.9923 36 1 5.1351 -4.6194 -1.2817 37 1 3.7945 -5.4444 -0.3209 38 1 3.7803 -4.8946 -3.4084 39 1 2.4395 -5.7194 -2.4475 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713649429.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 62.081921 kcal Electronic energy + Delta-G solvation = -21313.249495 eV Core-core repulsion = 18065.190067 eV Total energy + Delta-G solvation = -3248.059427 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -42.54169 -40.38383 -38.06125 -37.39305 -36.10684 -33.71695 -32.46088 -31.80748 -29.79486 -27.63934 -25.74558 -25.06863 -23.72768 -23.29493 -22.70763 -20.97511 -20.24843 -19.69140 -18.74953 -17.67174 -17.09984 -16.70698 -16.51243 -16.24031 -15.86611 -15.57574 -15.32493 -15.19533 -14.79968 -14.53187 -14.28074 -13.76390 -13.45210 -13.10461 -12.94724 -12.91079 -12.76295 -12.45530 -12.35198 -12.17215 -12.08434 -11.93363 -11.82454 -11.35407 -11.01670 -10.92101 -10.28189 -9.82263 -9.60112 -9.36259 -8.04726 -5.40632 0.60970 1.01798 1.38054 1.44107 1.50428 1.71918 1.97302 2.28871 2.48311 2.99572 3.26405 3.34092 3.56635 3.72892 3.89450 4.01477 4.03483 4.11790 4.19405 4.31352 4.35852 4.42029 4.56172 4.63433 4.72794 4.73762 4.90508 4.95063 5.02221 5.08918 5.12041 5.22477 5.28401 5.54834 5.72039 6.18118 6.27744 6.41412 6.56199 7.03927 7.24368 7.77144 7.99182 9.16718 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022929 B = 0.003923 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1220.894423 B = 7135.838559 C = 7816.916107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.607 5.607 3 C 0.119 3.881 4 C 0.149 3.851 5 N -0.754 5.754 6 C -0.243 4.243 7 H 0.050 0.950 8 C -0.062 4.062 9 N -0.983 5.983 10 Si 0.960 3.040 11 H -0.281 1.281 12 H -0.290 1.290 13 H -0.243 1.243 14 C 0.585 3.415 15 O -0.582 6.582 16 C -0.312 4.312 17 C 0.136 3.864 18 N -0.443 5.443 19 H 0.463 0.537 20 N -0.315 5.315 21 C 0.147 3.853 22 C -0.109 4.109 23 C -0.151 4.151 24 C -0.150 4.150 25 H 0.095 0.905 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.108 0.892 29 H 0.068 0.932 30 H 0.000 1.000 31 H 0.033 0.967 32 H 0.369 0.631 33 H 0.260 0.740 34 H 0.236 0.764 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.096 0.904 38 H 0.111 0.889 39 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.155 -20.956 13.515 29.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.339 5.339 3 C -0.005 4.005 4 C 0.022 3.978 5 N -0.401 5.401 6 C -0.374 4.374 7 H 0.069 0.931 8 C -0.253 4.253 9 N -0.633 5.633 10 Si 0.786 3.214 11 H -0.207 1.207 12 H -0.217 1.217 13 H -0.167 1.167 14 C 0.375 3.625 15 O -0.462 6.462 16 C -0.327 4.327 17 C -0.018 4.018 18 N -0.150 5.150 19 H 0.312 0.688 20 N -0.138 5.138 21 C -0.019 4.019 22 C -0.130 4.130 23 C -0.189 4.189 24 C -0.187 4.187 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.051 0.949 32 H 0.203 0.797 33 H 0.069 0.931 34 H 0.252 0.748 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.114 0.886 38 H 0.129 0.871 39 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -14.931 -22.153 13.058 29.736 hybrid contribution 0.601 1.550 0.488 1.733 sum -14.330 -20.602 13.546 28.519 Atomic orbital electron populations 1.22373 0.76834 1.04728 1.03852 1.47663 1.08655 1.04453 1.73107 1.21430 0.98146 0.85307 0.95601 1.20967 0.94298 0.86042 0.96526 1.42494 1.69074 1.24313 1.04179 1.18980 1.29349 1.02952 0.86092 0.93146 1.25577 1.00647 0.98380 1.00720 1.69894 1.46170 1.20334 1.26919 0.85348 0.78924 0.77278 0.79892 1.20743 1.21672 1.16678 1.17772 0.86188 0.83483 0.75096 1.90768 1.15881 1.87803 1.51714 1.20114 1.00630 0.96545 1.15395 1.23851 0.93973 0.87611 0.96368 1.46092 1.19549 1.10748 1.38620 0.68781 1.77010 0.99109 1.21897 1.15792 1.21415 0.94521 0.90333 0.95660 1.20304 0.93387 0.95491 1.03773 1.22980 0.97366 0.99450 0.99098 1.23066 1.02817 0.97328 0.95470 0.88679 0.89989 0.89911 0.87386 0.91354 0.98217 0.94943 0.79723 0.93119 0.74753 0.88126 0.87535 0.88556 0.87082 0.87642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.86 9.02 127.77 1.15 2.02 16 2 N -0.61 -15.48 2.87 -850.66 -2.44 -17.92 16 3 C 0.12 3.69 5.53 86.38 0.48 4.17 16 4 C 0.15 6.15 6.58 86.38 0.57 6.72 16 5 N -0.75 -37.14 5.41 -343.46 -1.86 -39.00 16 6 C -0.24 -14.58 10.47 84.03 0.88 -13.70 16 7 H 0.05 3.34 8.06 -2.91 -0.02 3.32 16 8 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 9 N -0.98 -64.54 13.97 21.65 0.30 -64.24 16 10 Si 0.96 46.05 27.74 68.60 1.90 47.96 16 11 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 13 H -0.24 -10.19 6.52 99.48 0.65 -9.54 16 14 C 0.58 17.94 7.47 86.66 0.65 18.58 16 15 O -0.58 -23.56 15.94 -4.07 -0.06 -23.62 16 16 C -0.31 -7.47 5.38 -20.15 -0.11 -7.58 16 17 C 0.14 1.67 9.74 84.28 0.82 2.49 16 18 N -0.44 -5.33 7.29 -56.31 -0.41 -5.75 16 19 H 0.46 1.54 8.96 -213.43 -1.91 -0.37 16 20 N -0.31 -6.80 12.22 -46.68 -0.57 -7.37 16 21 C 0.15 3.84 6.79 43.51 0.30 4.13 16 22 C -0.11 -2.98 5.68 -11.52 -0.07 -3.05 16 23 C -0.15 -3.43 10.23 30.59 0.31 -3.11 16 24 C -0.15 -3.16 10.14 30.62 0.31 -2.85 16 25 H 0.09 0.55 7.32 -2.38 -0.02 0.53 16 26 H 0.08 1.12 8.03 -2.39 -0.02 1.10 16 27 H 0.08 0.96 5.89 -2.39 -0.01 0.94 16 28 H 0.11 2.70 8.07 -2.39 -0.02 2.68 16 29 H 0.07 2.40 7.36 -2.39 -0.02 2.39 16 30 H 0.00 -0.01 8.14 -2.38 -0.02 -0.03 16 31 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.37 16.86 5.53 -92.71 -0.51 16.35 16 33 H 0.26 16.12 8.31 -92.71 -0.77 15.35 16 34 H 0.24 0.48 6.25 -2.91 -0.02 0.46 16 35 H 0.10 3.27 7.90 -2.39 -0.02 3.25 16 36 H 0.11 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.11 2.12 7.90 -2.39 -0.02 2.10 16 Total: -1.00 -86.27 329.02 1.22 -85.05 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -1.40 Total: 20.33 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: 5.76 Total: 4.56 kcal Atomic # 7 Polarization: -129.29 SS G_CDS: -4.98 Total: -134.27 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: -0.06 Total: -23.62 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 1.90 Total: 47.96 kcal Total: -86.27 1.22 -85.05 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713649429.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.133 kcal (2) G-P(sol) polarization free energy of solvation -86.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.051 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds