Wall clock time and date at job start Wed Apr 15 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 120.00056 * 2 1 4 4 C 1.52993 * 109.47029 * 269.99821 * 3 2 1 5 5 N 1.46498 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.36939 * 120.00268 * 180.02562 * 5 4 3 7 7 H 1.07998 * 119.99956 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00043 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99706 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00120 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47176 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47157 * 120.00078 * 10 8 6 13 13 H 1.48506 * 109.47335 * 240.00275 * 10 8 6 14 14 C 1.34782 * 120.00085 * 179.97438 * 2 1 3 15 15 O 1.21568 * 120.00048 * 183.52007 * 14 2 1 16 16 C 1.47710 * 119.99816 * 3.52315 * 14 2 1 17 17 C 1.41496 * 126.51749 * 173.45340 * 16 14 2 18 18 C 1.35372 * 105.50170 * 179.97438 * 17 16 14 19 19 C 1.50700 * 126.38090 * 180.02562 * 18 17 16 20 20 C 1.53003 * 117.51375 * 146.28316 * 19 18 17 21 21 C 1.53002 * 117.49592 * 214.90907 * 19 18 17 22 22 N 1.35033 * 107.23001 * 0.26035 * 18 17 16 23 23 H 0.96991 * 124.88439 * 179.70723 * 22 18 17 24 24 N 1.28474 * 110.22569 * 359.55121 * 22 18 17 25 25 H 1.08995 * 109.47182 * 264.08642 * 1 2 3 26 26 H 1.09003 * 109.47110 * 24.08351 * 1 2 3 27 27 H 1.08997 * 109.46857 * 144.08613 * 1 2 3 28 28 H 1.08994 * 109.47275 * 29.99977 * 3 2 1 29 29 H 1.09005 * 109.46815 * 149.99593 * 3 2 1 30 30 H 1.09002 * 109.47147 * 299.99862 * 4 3 2 31 31 H 1.08995 * 109.47294 * 59.99690 * 4 3 2 32 32 H 0.97004 * 120.00038 * 0.02562 * 5 4 3 33 33 H 0.97004 * 119.99337 * 179.97438 * 9 8 6 34 34 H 1.07996 * 127.25275 * 0.02562 * 17 16 14 35 35 H 1.08999 * 115.55343 * 0.58193 * 19 18 17 36 36 H 1.09006 * 117.49842 * 214.96755 * 20 19 18 37 37 H 1.08993 * 117.50156 * 359.97438 * 20 19 18 38 38 H 1.09007 * 117.49662 * 359.97438 * 21 19 18 39 39 H 1.08997 * 117.50405 * 144.97611 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4424 5 7 3.1856 2.9788 -1.4425 6 6 3.5276 3.5719 -2.6285 7 1 3.2573 3.1044 -3.5637 8 6 4.2226 4.7735 -2.6285 9 7 4.5533 5.3424 -1.4886 10 14 4.6898 5.5822 -4.2462 11 1 4.2058 4.7475 -5.3749 12 1 4.0677 6.9284 -4.3244 13 1 6.1669 5.7141 -4.3253 14 6 2.1389 -1.1672 0.0005 15 8 3.3529 -1.1682 0.0652 16 6 1.4024 -2.4453 -0.0775 17 6 1.9670 -3.7353 -0.2164 18 6 0.9167 -4.5890 -0.2423 19 6 0.9866 -6.0884 -0.3760 20 6 -0.0723 -6.9136 0.3579 21 6 -0.1269 -6.7799 -1.1653 22 7 -0.2054 -3.8461 -0.1312 23 1 -1.1078 -4.2016 -0.1258 24 7 0.0944 -2.6009 -0.0304 25 1 -0.3633 -0.1059 1.0221 26 1 -0.3633 0.9382 -0.4194 27 1 -0.3633 -0.8323 -0.6028 28 1 1.6085 2.0284 0.5138 29 1 3.1499 1.1384 0.5139 30 1 3.0416 0.9507 -1.9562 31 1 1.5002 1.8406 -1.9563 32 1 3.4287 3.3985 -0.6025 33 1 5.0394 6.1819 -1.4886 34 1 3.0151 -3.9861 -0.2862 35 1 1.9901 -6.5076 -0.4488 36 1 0.2345 -7.8759 0.7679 37 1 -0.8195 -6.3721 0.9379 38 1 -0.9102 -6.1503 -1.5875 39 1 0.1441 -7.6538 -1.7577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001753233281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:32 Heat of formation + Delta-G solvation = 90.748681 kcal Electronic energy + Delta-G solvation = -20805.465505 eV Core-core repulsion = 17558.649162 eV Total energy + Delta-G solvation = -3246.816343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.95696 -39.36945 -37.64187 -35.81533 -34.27156 -32.14549 -31.35019 -30.67884 -28.12878 -26.45816 -24.50730 -23.85008 -22.98169 -22.63759 -21.32945 -21.11868 -18.75668 -18.15470 -17.08944 -16.72190 -16.10109 -15.98861 -15.57140 -14.91152 -14.50415 -14.34367 -13.85739 -13.57094 -13.29947 -13.14962 -12.79279 -12.73750 -12.55727 -12.31385 -12.19779 -11.57455 -11.21128 -11.07837 -10.92765 -10.86959 -10.67219 -10.58762 -10.03222 -9.89526 -9.66350 -9.53127 -9.02951 -8.81336 -8.36685 -6.86216 -5.70013 -2.98822 1.43428 1.84788 2.54997 3.17477 3.36462 3.48652 3.52432 3.54045 3.56624 3.93030 4.19573 4.27825 4.37195 4.62952 4.67168 4.95344 5.02053 5.26441 5.37224 5.42867 5.43872 5.46068 5.59294 5.62551 5.69784 5.75299 5.93897 5.98165 6.11335 6.21710 6.24018 6.63000 6.74825 6.84623 7.01185 7.53993 7.69551 7.77194 8.36533 8.48812 9.59548 10.16270 10.51675 11.53097 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037082 B = 0.002894 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.894199 B = 9672.902083 C = 9875.393688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.598 5.598 3 C 0.107 3.893 4 C 0.143 3.857 5 N -0.730 5.730 6 C -0.235 4.235 7 H 0.071 0.929 8 C -0.016 4.016 9 N -0.934 5.934 10 Si 0.908 3.092 11 H -0.280 1.280 12 H -0.292 1.292 13 H -0.291 1.291 14 C 0.595 3.405 15 O -0.526 6.526 16 C 0.002 3.998 17 C -0.168 4.168 18 C 0.044 3.956 19 C -0.086 4.086 20 C -0.174 4.174 21 C -0.174 4.174 22 N -0.387 5.387 23 H 0.440 0.560 24 N -0.254 5.254 25 H 0.053 0.947 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.023 0.977 31 H 0.019 0.981 32 H 0.384 0.616 33 H 0.254 0.746 34 H 0.164 0.836 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.091 -25.754 4.998 29.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.330 5.330 3 C -0.015 4.015 4 C 0.014 3.986 5 N -0.375 5.375 6 C -0.366 4.366 7 H 0.089 0.911 8 C -0.212 4.212 9 N -0.583 5.583 10 Si 0.740 3.260 11 H -0.206 1.206 12 H -0.219 1.219 13 H -0.218 1.218 14 C 0.380 3.620 15 O -0.400 6.400 16 C -0.158 4.158 17 C -0.196 4.196 18 C -0.081 4.081 19 C -0.105 4.105 20 C -0.212 4.212 21 C -0.211 4.211 22 N -0.100 5.100 23 H 0.284 0.716 24 N -0.089 5.089 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.109 0.891 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.041 0.959 31 H 0.037 0.963 32 H 0.218 0.782 33 H 0.064 0.936 34 H 0.181 0.819 35 H 0.151 0.849 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -14.361 -25.062 4.959 29.308 hybrid contribution 0.458 0.047 -0.691 0.830 sum -13.903 -25.015 4.268 28.936 Atomic orbital electron populations 1.22095 0.78884 1.03647 1.02112 1.47642 1.07496 1.05794 1.72097 1.21766 0.97610 0.82893 0.99233 1.20917 0.95140 0.89390 0.93157 1.42223 1.67029 1.21661 1.06606 1.19262 1.29108 1.02262 0.86003 0.91147 1.24752 1.01367 0.98107 0.96925 1.69680 1.45106 1.19615 1.23857 0.86087 0.77902 0.79104 0.82938 1.20576 1.21895 1.21828 1.16971 0.86222 0.81664 0.77121 1.90825 1.12707 1.86468 1.49988 1.22012 0.89523 0.95477 1.08832 1.21456 1.00042 0.90046 1.08066 1.20423 0.86900 0.93358 1.07424 1.20532 0.97487 0.86360 1.06149 1.23094 1.01261 1.02036 0.94776 1.23099 1.00519 1.03146 0.94374 1.43351 1.09183 1.03829 1.53678 0.71586 1.73797 1.16549 0.98865 1.19732 0.92846 0.91063 0.89127 0.90242 0.89451 0.95896 0.96336 0.78235 0.93577 0.81868 0.84853 0.87553 0.88814 0.88775 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.97 9.63 59.85 0.58 1.54 16 2 N -0.60 -9.81 2.87 -182.75 -0.53 -10.34 16 3 C 0.11 2.00 5.52 -4.04 -0.02 1.98 16 4 C 0.14 3.19 6.58 -4.05 -0.03 3.16 16 5 N -0.73 -19.76 5.60 -59.91 -0.34 -20.10 16 6 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 7 H 0.07 2.03 7.83 -52.49 -0.41 1.62 16 8 C -0.02 -0.47 5.50 -17.43 -0.10 -0.57 16 9 N -0.93 -29.18 13.06 55.49 0.72 -28.45 16 10 Si 0.91 23.19 29.55 -169.99 -5.02 18.17 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 13 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 14 C 0.59 10.45 7.68 -12.39 -0.10 10.36 16 15 O -0.53 -11.05 16.49 5.31 0.09 -10.96 16 16 C 0.00 0.03 6.82 -82.77 -0.56 -0.53 16 17 C -0.17 -2.05 10.73 -39.36 -0.42 -2.47 16 18 C 0.04 0.40 6.64 -82.21 -0.55 -0.15 16 19 C -0.09 -0.50 6.26 -91.77 -0.57 -1.07 16 20 C -0.17 -0.70 10.22 -26.73 -0.27 -0.98 16 21 C -0.17 -0.73 10.22 -26.73 -0.27 -1.00 16 22 N -0.39 -3.27 6.80 33.50 0.23 -3.04 16 23 H 0.44 2.14 8.96 -190.45 -1.71 0.44 16 24 N -0.25 -2.97 8.76 33.42 0.29 -2.67 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 0.86 8.03 -51.93 -0.42 0.44 16 27 H 0.09 1.11 5.36 -51.93 -0.28 0.83 16 28 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 29 H 0.09 1.77 7.37 -51.93 -0.38 1.39 16 30 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.38 10.73 7.67 -40.82 -0.31 10.42 16 33 H 0.25 7.63 8.31 -40.82 -0.34 7.29 16 34 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 35 H 0.13 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.11 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 LS Contribution 335.05 15.07 5.05 5.05 Total: -1.00 -35.85 335.05 -8.84 -44.69 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -6.87 Total: 4.47 kcal Atomic # 6 Polarization: 5.65 SS G_CDS: -2.47 Total: 3.18 kcal Atomic # 7 Polarization: -64.99 SS G_CDS: 0.38 Total: -64.60 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.96 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -5.02 Total: 18.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -35.85 -8.84 -44.69 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753233281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.442 kcal (2) G-P(sol) polarization free energy of solvation -35.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds