Wall clock time and date at job start Wed Apr 15 2020 11:43:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46505 * 120.00056 * 2 1 4 4 C 1.52993 * 109.47029 * 269.99821 * 3 2 1 5 5 N 1.46498 * 109.47327 * 180.02562 * 4 3 2 6 6 C 1.36939 * 120.00268 * 180.02562 * 5 4 3 7 7 H 1.07998 * 119.99956 * 359.97438 * 6 5 4 8 8 C 1.38811 * 120.00043 * 180.02562 * 6 5 4 9 9 N 1.31623 * 119.99706 * 0.02562 * 8 6 5 10 10 Si 1.86797 * 120.00120 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47176 * 0.02562 * 10 8 6 12 12 H 1.48500 * 109.47157 * 120.00078 * 10 8 6 13 13 H 1.48506 * 109.47335 * 240.00275 * 10 8 6 14 14 C 1.34782 * 120.00085 * 179.97438 * 2 1 3 15 15 O 1.21568 * 120.00048 * 183.52007 * 14 2 1 16 16 C 1.47710 * 119.99816 * 3.52315 * 14 2 1 17 17 C 1.41496 * 126.51749 * 173.45340 * 16 14 2 18 18 C 1.35372 * 105.50170 * 179.97438 * 17 16 14 19 19 C 1.50700 * 126.38090 * 180.02562 * 18 17 16 20 20 C 1.53003 * 117.51375 * 146.28316 * 19 18 17 21 21 C 1.53002 * 117.49592 * 214.90907 * 19 18 17 22 22 N 1.35033 * 107.23001 * 0.26035 * 18 17 16 23 23 H 0.96991 * 124.88439 * 179.70723 * 22 18 17 24 24 N 1.28474 * 110.22569 * 359.55121 * 22 18 17 25 25 H 1.08995 * 109.47182 * 264.08642 * 1 2 3 26 26 H 1.09003 * 109.47110 * 24.08351 * 1 2 3 27 27 H 1.08997 * 109.46857 * 144.08613 * 1 2 3 28 28 H 1.08994 * 109.47275 * 29.99977 * 3 2 1 29 29 H 1.09005 * 109.46815 * 149.99593 * 3 2 1 30 30 H 1.09002 * 109.47147 * 299.99862 * 4 3 2 31 31 H 1.08995 * 109.47294 * 59.99690 * 4 3 2 32 32 H 0.97004 * 120.00038 * 0.02562 * 5 4 3 33 33 H 0.97004 * 119.99337 * 179.97438 * 9 8 6 34 34 H 1.07996 * 127.25275 * 0.02562 * 17 16 14 35 35 H 1.08999 * 115.55343 * 0.58193 * 19 18 17 36 36 H 1.09006 * 117.49842 * 214.96755 * 20 19 18 37 37 H 1.08993 * 117.50156 * 359.97438 * 20 19 18 38 38 H 1.09007 * 117.49662 * 359.97438 * 21 19 18 39 39 H 1.08997 * 117.50405 * 144.97611 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4424 5 7 3.1856 2.9788 -1.4425 6 6 3.5276 3.5719 -2.6285 7 1 3.2573 3.1044 -3.5637 8 6 4.2226 4.7735 -2.6285 9 7 4.5533 5.3424 -1.4886 10 14 4.6898 5.5822 -4.2462 11 1 4.2058 4.7475 -5.3749 12 1 4.0677 6.9284 -4.3244 13 1 6.1669 5.7141 -4.3253 14 6 2.1389 -1.1672 0.0005 15 8 3.3529 -1.1682 0.0652 16 6 1.4024 -2.4453 -0.0775 17 6 1.9670 -3.7353 -0.2164 18 6 0.9167 -4.5890 -0.2423 19 6 0.9866 -6.0884 -0.3760 20 6 -0.0723 -6.9136 0.3579 21 6 -0.1269 -6.7799 -1.1653 22 7 -0.2054 -3.8461 -0.1312 23 1 -1.1078 -4.2016 -0.1258 24 7 0.0944 -2.6009 -0.0304 25 1 -0.3633 -0.1059 1.0221 26 1 -0.3633 0.9382 -0.4194 27 1 -0.3633 -0.8323 -0.6028 28 1 1.6085 2.0284 0.5138 29 1 3.1499 1.1384 0.5139 30 1 3.0416 0.9507 -1.9562 31 1 1.5002 1.8406 -1.9563 32 1 3.4287 3.3985 -0.6025 33 1 5.0394 6.1819 -1.4886 34 1 3.0151 -3.9861 -0.2862 35 1 1.9901 -6.5076 -0.4488 36 1 0.2345 -7.8759 0.7679 37 1 -0.8195 -6.3721 0.9379 38 1 -0.9102 -6.1503 -1.5875 39 1 0.1441 -7.6538 -1.7577 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001753233281.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:32 Heat of formation + Delta-G solvation = 65.615877 kcal Electronic energy + Delta-G solvation = -20806.555345 eV Core-core repulsion = 17558.649162 eV Total energy + Delta-G solvation = -3247.906184 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.82498 -40.72351 -38.07972 -37.43549 -36.11525 -33.59839 -32.81214 -31.67992 -29.82060 -27.67837 -26.22159 -24.72891 -24.10851 -23.26420 -22.76482 -22.07597 -20.03255 -19.19538 -18.90429 -17.73735 -17.32506 -16.98988 -16.61277 -16.36849 -15.98224 -15.46913 -15.19122 -15.07292 -15.01035 -14.52772 -14.26776 -13.96224 -13.41372 -13.14104 -13.08826 -12.89651 -12.78097 -12.45391 -12.37152 -12.09712 -12.04540 -11.89144 -11.67917 -11.44058 -11.20671 -10.99979 -10.48418 -9.79890 -9.71258 -9.07889 -7.98319 -5.29475 0.43028 0.96854 1.45951 1.48331 1.58346 1.68645 2.04620 2.26753 2.55488 3.00851 3.19364 3.34820 3.43544 3.76717 3.91024 4.03811 4.04826 4.12884 4.21478 4.24692 4.39767 4.54072 4.56092 4.73626 4.76319 4.77899 4.95945 4.99132 5.02602 5.07848 5.15025 5.20387 5.25663 5.42361 5.51720 6.01709 6.23144 6.29990 6.75848 7.05552 7.29216 7.99772 8.26491 9.25322 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.037082 B = 0.002894 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.894199 B = 9672.902083 C = 9875.393688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.597 5.597 3 C 0.121 3.879 4 C 0.150 3.850 5 N -0.742 5.742 6 C -0.251 4.251 7 H 0.073 0.927 8 C -0.074 4.074 9 N -0.968 5.968 10 Si 0.980 3.020 11 H -0.267 1.267 12 H -0.287 1.287 13 H -0.291 1.291 14 C 0.588 3.412 15 O -0.575 6.575 16 C -0.027 4.027 17 C -0.198 4.198 18 C 0.070 3.930 19 C -0.108 4.108 20 C -0.162 4.162 21 C -0.164 4.164 22 N -0.365 5.365 23 H 0.459 0.541 24 N -0.250 5.250 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.000 1.000 31 H 0.030 0.970 32 H 0.377 0.623 33 H 0.254 0.746 34 H 0.158 0.842 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.356 -27.544 4.357 32.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.329 5.329 3 C -0.002 4.002 4 C 0.022 3.978 5 N -0.386 5.386 6 C -0.382 4.382 7 H 0.091 0.909 8 C -0.267 4.267 9 N -0.618 5.618 10 Si 0.808 3.192 11 H -0.192 1.192 12 H -0.213 1.213 13 H -0.218 1.218 14 C 0.376 3.624 15 O -0.453 6.453 16 C -0.186 4.186 17 C -0.226 4.226 18 C -0.056 4.056 19 C -0.128 4.128 20 C -0.199 4.199 21 C -0.202 4.202 22 N -0.081 5.081 23 H 0.307 0.693 24 N -0.087 5.087 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.084 0.916 30 H 0.018 0.982 31 H 0.048 0.952 32 H 0.209 0.791 33 H 0.063 0.937 34 H 0.176 0.824 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.702 -26.887 4.314 31.945 hybrid contribution 1.069 0.457 -0.475 1.256 sum -15.633 -26.431 3.838 30.947 Atomic orbital electron populations 1.22297 0.76332 1.04490 1.03526 1.47720 1.08932 1.04659 1.71549 1.21445 0.97594 0.84577 0.96609 1.20931 0.94365 0.86940 0.95561 1.42388 1.67534 1.22920 1.05718 1.19626 1.29075 1.02631 0.86877 0.90919 1.25654 1.01583 0.98810 1.00610 1.69834 1.45905 1.19969 1.26085 0.84989 0.77207 0.78051 0.78959 1.19164 1.21337 1.21845 1.17481 0.85956 0.82919 0.76069 1.90781 1.14872 1.87336 1.52275 1.21588 0.90596 0.94535 1.11878 1.21569 1.00908 0.90060 1.10049 1.20698 0.85800 0.94618 1.04485 1.20657 0.98859 0.84283 1.08973 1.23214 0.99835 1.01971 0.94890 1.23217 0.99163 1.03026 0.94757 1.43406 1.10192 1.02909 1.51639 0.69291 1.73677 1.15087 1.00353 1.19619 0.91073 0.90147 0.88360 0.88137 0.91616 0.98211 0.95174 0.79131 0.93734 0.82415 0.84288 0.86300 0.88115 0.88211 0.86377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.81 9.63 127.77 1.23 3.04 16 2 N -0.60 -19.75 2.87 -850.36 -2.44 -22.19 16 3 C 0.12 4.60 5.52 86.38 0.48 5.08 16 4 C 0.15 6.84 6.58 86.38 0.57 7.41 16 5 N -0.74 -40.99 5.60 -343.47 -1.92 -42.92 16 6 C -0.25 -14.92 9.99 84.03 0.84 -14.08 16 7 H 0.07 4.20 7.83 -2.91 -0.02 4.18 16 8 C -0.07 -4.45 5.50 84.86 0.47 -3.98 16 9 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 10 Si 0.98 47.80 29.55 68.60 2.03 49.83 16 11 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 13 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 14 C 0.59 21.41 7.68 86.75 0.67 22.08 16 15 O -0.57 -25.67 16.49 -3.93 -0.06 -25.73 16 16 C -0.03 -0.78 6.82 42.46 0.29 -0.49 16 17 C -0.20 -4.86 10.73 22.41 0.24 -4.62 16 18 C 0.07 1.15 6.64 41.40 0.28 1.42 16 19 C -0.11 -1.00 6.26 -11.54 -0.07 -1.07 16 20 C -0.16 -0.76 10.22 30.60 0.31 -0.44 16 21 C -0.16 -0.82 10.22 30.60 0.31 -0.51 16 22 N -0.36 -5.31 6.80 -47.93 -0.33 -5.63 16 23 H 0.46 2.94 8.96 -220.00 -1.97 0.97 16 24 N -0.25 -5.48 8.76 -48.18 -0.42 -5.91 16 25 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 26 H 0.08 1.79 8.03 -2.39 -0.02 1.77 16 27 H 0.10 2.24 5.36 -2.39 -0.01 2.23 16 28 H 0.10 3.38 8.07 -2.39 -0.02 3.36 16 29 H 0.07 2.79 7.37 -2.38 -0.02 2.78 16 30 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 31 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.38 21.63 7.67 -92.71 -0.71 20.92 16 33 H 0.25 15.38 8.31 -92.71 -0.77 14.61 16 34 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 35 H 0.14 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.12 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 38 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 39 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -78.95 335.05 1.13 -77.81 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: -1.60 Total: 21.86 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: 5.61 Total: 13.83 kcal Atomic # 7 Polarization: -132.76 SS G_CDS: -4.83 Total: -137.60 kcal Atomic # 8 Polarization: -25.67 SS G_CDS: -0.06 Total: -25.73 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.03 Total: 49.83 kcal Total: -78.95 1.13 -77.81 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001753233281.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.431 kcal (2) G-P(sol) polarization free energy of solvation -78.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.815 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds