Wall clock time and date at job start Wed Apr 15 2020 11:43:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35546 * 117.00202 * 2 1 4 4 C 1.38918 * 120.46604 * 179.97438 * 3 2 1 5 5 C 1.39238 * 118.28624 * 179.97438 * 4 3 2 6 6 N 1.38605 * 120.49782 * 180.02562 * 5 4 3 7 7 C 1.46959 * 111.00031 * 180.02562 * 6 5 4 8 8 C 1.53058 * 109.36419 * 183.18897 * 7 6 5 9 9 N 1.46955 * 109.36051 * 301.59955 * 8 7 6 10 10 C 1.46906 * 110.99744 * 183.18754 * 9 8 7 11 11 C 1.50703 * 109.47109 * 169.99905 * 10 9 8 12 12 H 1.08005 * 119.99876 * 0.02562 * 11 10 9 13 13 C 1.37875 * 119.99989 * 180.02562 * 11 10 9 14 14 N 1.31518 * 119.99944 * 359.97438 * 13 11 10 15 15 Si 1.86798 * 119.99979 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47418 * 89.99710 * 15 13 11 17 17 H 1.48498 * 109.47091 * 209.99770 * 15 13 11 18 18 H 1.48498 * 109.46997 * 329.99580 * 15 13 11 19 19 C 1.46959 * 110.88319 * 59.32174 * 9 8 7 20 20 C 1.46959 * 110.99978 * 303.80087 * 6 5 4 21 21 N 1.33154 * 119.00583 * 0.27267 * 5 4 3 22 22 C 1.31723 * 120.83246 * 359.44435 * 21 5 4 23 23 N 1.31773 * 121.89425 * 0.56870 * 22 21 5 24 24 H 1.08993 * 109.47657 * 300.00892 * 1 2 3 25 25 H 1.09004 * 109.46743 * 60.00824 * 1 2 3 26 26 H 1.08998 * 109.47420 * 180.02562 * 1 2 3 27 27 H 1.07996 * 120.85777 * 359.95539 * 4 3 2 28 28 H 1.08995 * 109.48972 * 63.22071 * 7 6 5 29 29 H 1.08998 * 109.48999 * 303.15472 * 7 6 5 30 30 H 1.08994 * 109.48935 * 181.63483 * 8 7 6 31 31 H 1.08999 * 109.48934 * 61.56553 * 8 7 6 32 32 H 1.08992 * 109.47459 * 289.99824 * 10 9 8 33 33 H 1.09004 * 109.47040 * 49.99975 * 10 9 8 34 34 H 0.96997 * 119.99752 * 180.02562 * 14 13 11 35 35 H 1.08995 * 109.48972 * 60.64434 * 19 9 8 36 36 H 1.08998 * 109.48999 * 180.71033 * 19 9 8 37 37 H 1.08999 * 109.48803 * 296.77771 * 20 6 5 38 38 H 1.09000 * 109.48812 * 56.82407 * 20 6 5 39 39 H 1.08001 * 119.05463 * 180.26151 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0443 1.2077 0.0000 4 6 3.4310 1.2916 0.0005 5 6 4.0155 2.5554 0.0000 6 7 5.3948 2.6925 -0.0001 7 6 5.7832 4.1098 -0.0001 8 6 7.3078 4.2182 -0.0805 9 7 7.9073 3.5108 1.0596 10 6 9.3691 3.6560 1.0596 11 6 9.9257 3.1352 2.3596 12 1 9.2601 2.7358 3.1105 13 6 11.2846 3.1685 2.5903 14 7 12.0952 3.6544 1.6756 15 14 11.9746 2.5222 4.2014 16 1 12.2847 1.0766 4.0627 17 1 13.2151 3.2642 4.5416 18 1 10.9724 2.7122 5.2807 19 6 7.5189 2.0935 1.0596 20 6 5.9943 1.9856 1.1403 21 7 3.2296 3.6303 0.0045 22 6 1.9181 3.5077 -0.0016 23 7 1.3290 2.3290 -0.0011 24 1 -0.3634 0.5139 0.8898 25 1 -0.3633 0.5137 -0.8901 26 1 -0.3634 -1.0276 0.0005 27 1 4.0399 0.3997 0.0017 28 1 5.4328 4.5829 0.9172 29 1 5.3373 4.6090 -0.8603 30 1 7.5997 5.2679 -0.0514 31 1 7.6557 3.7693 -1.0108 32 1 9.7907 3.0880 0.2304 33 1 9.6297 4.7086 0.9486 34 1 13.0512 3.6775 1.8378 35 1 7.8692 1.6204 0.1423 36 1 7.9647 1.5942 1.9199 37 1 5.6463 2.4349 2.0704 38 1 5.7020 0.9359 1.1119 39 1 1.3081 4.3990 -0.0020 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330887512.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:14 Heat of formation + Delta-G solvation = 14.532306 kcal Electronic energy + Delta-G solvation = -21407.156426 eV Core-core repulsion = 18157.035092 eV Total energy + Delta-G solvation = -3250.121333 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.60 seconds Orbital eigenvalues (eV) -42.40624 -40.50166 -39.25724 -36.98685 -34.71764 -33.49615 -32.62291 -31.85804 -29.81094 -28.31495 -26.87378 -25.79139 -24.21774 -23.95574 -23.11371 -20.95520 -19.66811 -19.00887 -18.43465 -17.34861 -17.20775 -16.63291 -16.53474 -16.21511 -16.03231 -15.91485 -15.45746 -15.38050 -15.07364 -14.85359 -14.58743 -13.99738 -13.47795 -13.15069 -12.91259 -12.77064 -12.67047 -12.55214 -12.36580 -12.25231 -12.18304 -11.84481 -11.62683 -11.55770 -11.19196 -10.61164 -10.49801 -10.34495 -9.57148 -9.08527 -8.19916 -6.30184 -0.07448 0.10363 1.42891 1.44109 1.55615 1.80359 2.37090 2.41259 2.77113 3.12316 3.14099 3.23051 3.27558 3.80086 3.94759 4.04354 4.09827 4.26780 4.30978 4.37408 4.42686 4.45971 4.51100 4.55783 4.72129 4.79019 4.87163 4.92332 4.94187 5.07296 5.18014 5.23352 5.41238 5.64378 5.86122 5.96017 6.03926 6.14226 6.27870 6.56895 6.85412 7.07903 7.39740 8.91366 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.033682 B = 0.003438 C = 0.003229 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.105820 B = 8143.483861 C = 8668.634969 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.370 3.630 4 C -0.273 4.273 5 C 0.378 3.622 6 N -0.480 5.480 7 C 0.088 3.912 8 C 0.052 3.948 9 N -0.546 5.546 10 C 0.209 3.791 11 C -0.523 4.523 12 H 0.066 0.934 13 C 0.002 3.998 14 N -0.935 5.935 15 Si 0.969 3.031 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.264 1.264 19 C 0.068 3.932 20 C 0.076 3.924 21 N -0.590 5.590 22 C 0.358 3.642 23 N -0.601 5.601 24 H 0.062 0.938 25 H 0.062 0.938 26 H 0.126 0.874 27 H 0.159 0.841 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.026 0.974 32 H -0.036 1.036 33 H 0.006 0.994 34 H 0.264 0.736 35 H 0.026 0.974 36 H 0.084 0.916 37 H 0.053 0.947 38 H 0.110 0.890 39 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.974 -4.998 -3.355 23.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.215 6.215 3 C 0.185 3.815 4 C -0.299 4.299 5 C 0.141 3.859 6 N -0.196 5.196 7 C -0.038 4.038 8 C -0.076 4.076 9 N -0.271 5.271 10 C 0.083 3.917 11 C -0.561 4.561 12 H 0.084 0.916 13 C -0.196 4.196 14 N -0.575 5.575 15 Si 0.794 3.206 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.188 1.188 19 C -0.061 4.061 20 C -0.049 4.049 21 N -0.315 5.315 22 C 0.069 3.931 23 N -0.334 5.334 24 H 0.081 0.919 25 H 0.081 0.919 26 H 0.144 0.856 27 H 0.177 0.823 28 H 0.074 0.926 29 H 0.115 0.885 30 H 0.099 0.901 31 H 0.044 0.956 32 H -0.019 1.019 33 H 0.024 0.976 34 H 0.073 0.927 35 H 0.044 0.956 36 H 0.102 0.898 37 H 0.071 0.929 38 H 0.128 0.872 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -23.151 -4.516 -3.371 23.827 hybrid contribution 1.274 -0.740 0.225 1.490 sum -21.878 -5.256 -3.146 22.719 Atomic orbital electron populations 1.23189 0.74893 1.05122 1.02807 1.86234 1.25137 1.23576 1.86580 1.19923 0.89105 0.85479 0.86990 1.21283 0.93255 0.99266 1.16103 1.19908 0.89674 0.88946 0.87419 1.58992 1.03557 1.15928 1.41172 1.21960 0.93651 0.85304 1.02919 1.22234 0.93952 0.99529 0.91926 1.62248 1.11362 1.12075 1.41402 1.19356 0.82249 0.94911 0.95179 1.21455 0.92085 1.40427 1.02176 0.91624 1.25914 0.97416 0.95633 1.00667 1.70089 1.04007 1.47234 1.36217 0.85377 0.77701 0.78329 0.79187 1.19732 1.20954 1.18834 1.22018 0.93501 0.89590 1.00991 1.22372 0.93704 0.99579 0.89241 1.68484 1.07567 1.32906 1.22499 1.25195 0.87408 0.94690 0.85834 1.68196 1.41525 0.99203 1.24456 0.91929 0.91910 0.85627 0.82309 0.92622 0.88467 0.90088 0.95586 1.01860 0.97595 0.92687 0.95566 0.89814 0.92897 0.87207 0.75024 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.41 113.37 1.18 1.62 16 2 O -0.31 -6.39 10.49 -88.52 -0.93 -7.31 16 3 C 0.37 8.64 7.52 84.68 0.64 9.28 16 4 C -0.27 -6.72 9.25 22.67 0.21 -6.51 16 5 C 0.38 10.26 6.40 133.00 0.85 11.11 16 6 N -0.48 -14.20 4.74 -700.99 -3.32 -17.52 16 7 C 0.09 2.70 4.80 86.31 0.41 3.11 16 8 C 0.05 1.90 5.61 86.31 0.48 2.38 16 9 N -0.55 -23.49 4.70 -900.27 -4.23 -27.72 16 10 C 0.21 11.11 4.72 85.56 0.40 11.51 16 11 C -0.52 -29.24 8.47 25.60 0.22 -29.02 16 12 H 0.07 3.56 7.13 -2.91 -0.02 3.54 16 13 C 0.00 0.10 5.46 84.65 0.46 0.56 16 14 N -0.94 -56.09 13.29 21.45 0.28 -55.80 16 15 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 17 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 18 H -0.26 -11.46 7.11 99.48 0.71 -10.75 16 19 C 0.07 2.54 5.43 86.31 0.47 3.01 16 20 C 0.08 2.26 5.37 86.31 0.46 2.73 16 21 N -0.59 -15.03 8.87 -197.79 -1.75 -16.78 16 22 C 0.36 7.31 12.28 180.91 2.22 9.53 16 23 N -0.60 -13.15 9.38 -313.04 -2.94 -16.09 16 24 H 0.06 0.81 8.12 -2.39 -0.02 0.79 16 25 H 0.06 0.81 8.12 -2.38 -0.02 0.79 16 26 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.16 3.54 7.25 -2.91 -0.02 3.52 16 28 H 0.06 1.78 8.06 -2.39 -0.02 1.76 16 29 H 0.10 2.73 7.85 -2.39 -0.02 2.71 16 30 H 0.08 2.89 8.07 -2.39 -0.02 2.87 16 31 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 32 H -0.04 -2.10 8.12 -2.39 -0.02 -2.12 16 33 H 0.01 0.34 8.03 -2.38 -0.02 0.32 16 34 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.08 3.32 6.79 -2.39 -0.02 3.31 16 37 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 38 H 0.11 2.66 6.86 -2.39 -0.02 2.65 16 39 H 0.23 2.79 8.06 -2.91 -0.02 2.77 16 Total: -1.00 -66.59 321.36 -1.81 -68.40 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 1.04 Total: 7.72 kcal Atomic # 6 Polarization: 11.31 SS G_CDS: 8.01 Total: 19.32 kcal Atomic # 7 Polarization: -121.95 SS G_CDS: -11.96 Total: -133.91 kcal Atomic # 8 Polarization: -6.39 SS G_CDS: -0.93 Total: -7.31 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -66.59 -1.81 -68.40 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330887512.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.929 kcal (2) G-P(sol) polarization free energy of solvation -66.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.60 seconds