Wall clock time and date at job start Wed Apr 15 2020 11:43:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35682 * 116.99619 * 2 1 4 4 C 1.38950 * 120.01603 * 180.02562 * 3 2 1 5 5 N 1.32089 * 120.10690 * 180.02562 * 4 3 2 6 6 C 1.32034 * 120.14428 * 359.97438 * 5 4 3 7 7 C 1.39154 * 120.04196 * 0.02562 * 6 5 4 8 8 N 1.38995 * 120.05550 * 179.97438 * 7 6 5 9 9 C 1.46954 * 111.00121 * 179.97438 * 8 7 6 10 10 C 1.53055 * 109.36378 * 183.18870 * 9 8 7 11 11 N 1.46953 * 109.36514 * 301.60308 * 10 9 8 12 12 C 1.46906 * 110.99875 * 183.18861 * 11 10 9 13 13 C 1.50699 * 109.47140 * 170.00105 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 11 16 16 N 1.31522 * 120.00244 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46950 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47074 * 119.99839 * 17 15 13 20 20 H 1.48505 * 109.46997 * 239.99833 * 17 15 13 21 21 C 1.46951 * 110.88066 * 59.32047 * 11 10 9 22 22 C 1.46956 * 111.00325 * 303.80094 * 8 7 6 23 23 N 1.32585 * 120.02408 * 0.29624 * 3 2 1 24 24 H 1.08999 * 109.47041 * 300.00163 * 1 2 3 25 25 H 1.09000 * 109.47477 * 59.99780 * 1 2 3 26 26 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.95176 * 0.04170 * 4 3 2 28 28 H 1.08007 * 119.98090 * 180.02562 * 6 5 4 29 29 H 1.09005 * 109.48381 * 63.22684 * 9 8 7 30 30 H 1.08996 * 109.51190 * 303.17012 * 9 8 7 31 31 H 1.09003 * 109.48634 * 181.63672 * 10 9 8 32 32 H 1.09004 * 109.48678 * 61.57576 * 10 9 8 33 33 H 1.09004 * 109.47040 * 290.00043 * 12 11 10 34 34 H 1.09000 * 109.47033 * 49.99995 * 12 11 10 35 35 H 0.96992 * 120.00038 * 179.97438 * 16 15 13 36 36 H 1.09005 * 109.48678 * 60.64401 * 21 11 10 37 37 H 1.09004 * 109.48825 * 180.70927 * 21 11 10 38 38 H 1.08998 * 109.48856 * 296.77753 * 22 8 7 39 39 H 1.09004 * 109.48212 * 56.81894 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4325 1.2822 -0.0005 5 7 4.0339 2.4582 0.0000 6 6 3.3193 3.5684 0.0005 7 6 1.9293 3.5022 0.0010 8 7 1.1767 4.6708 0.0021 9 6 -0.2619 4.3708 0.0019 10 6 -1.0530 5.6786 -0.0772 11 7 -0.6964 6.5336 1.0635 12 6 -1.4918 7.7687 1.0646 13 6 -1.2816 8.5004 2.3652 14 1 -0.6233 8.0889 3.1160 15 6 -1.9304 9.6946 2.5969 16 7 -2.7324 10.1955 1.6828 17 14 -1.6693 10.6020 4.2087 18 1 -0.7268 9.8344 5.0618 19 1 -1.1049 11.9477 3.9334 20 1 -2.9692 10.7449 4.9125 21 6 0.7422 6.8336 1.0636 22 6 1.5337 5.5261 1.1425 23 7 1.3232 2.3212 0.0059 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.0202 0.3761 -0.0016 28 1 3.8138 4.5286 0.0005 29 1 -0.5232 3.8425 0.9189 30 1 -0.5035 3.7469 -0.8586 31 1 -2.1205 5.4601 -0.0482 32 1 -0.8121 6.1936 -1.0072 33 1 -1.1783 8.4035 0.2358 34 1 -2.5474 7.5211 0.9535 35 1 -3.1892 11.0355 1.8460 36 1 1.0036 7.3618 0.1466 37 1 0.9835 7.4573 1.9244 38 1 1.2930 5.0112 2.0726 39 1 2.6013 5.7442 1.1133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000363218956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:23 Heat of formation + Delta-G solvation = 37.631099 kcal Electronic energy + Delta-G solvation = -21633.603676 eV Core-core repulsion = 18384.483982 eV Total energy + Delta-G solvation = -3249.119695 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.53839 -39.26079 -38.22298 -35.59118 -33.62016 -32.54542 -30.80668 -30.43381 -28.18933 -27.35088 -25.41266 -24.36495 -23.25654 -22.64569 -21.53772 -19.52481 -18.53407 -18.02654 -16.88021 -16.44088 -16.35055 -16.26142 -14.94485 -14.92214 -14.70573 -14.40220 -14.16088 -13.92705 -13.67973 -13.25678 -13.07892 -12.37915 -12.18010 -11.94271 -11.78962 -11.56587 -11.40365 -11.09118 -11.03697 -10.90839 -10.78217 -10.56393 -10.46525 -9.87617 -9.51291 -9.39841 -9.22179 -8.49427 -8.14273 -7.36562 -6.08202 -4.10212 0.77091 1.04239 2.73827 3.27039 3.27785 3.35334 3.39404 3.61819 4.09051 4.35231 4.37352 4.43811 4.79438 4.97456 5.07220 5.09278 5.14343 5.26013 5.27572 5.34811 5.40518 5.50959 5.63456 5.69855 5.81575 5.88562 6.03439 6.28911 6.41025 6.48087 6.58642 6.70272 7.03231 7.18940 7.26321 7.26875 7.68519 7.72277 7.98831 8.09482 8.45142 8.97260 9.54606 11.02651 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031268 B = 0.003663 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.259555 B = 7641.261524 C = 8026.648496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 O -0.302 6.302 3 C 0.303 3.697 4 C -0.007 4.007 5 N -0.384 5.384 6 C -0.008 4.008 7 C 0.320 3.680 8 N -0.469 5.469 9 C 0.072 3.928 10 C 0.052 3.948 11 N -0.539 5.539 12 C 0.193 3.807 13 C -0.509 4.509 14 H 0.064 0.936 15 C 0.056 3.944 16 N -0.897 5.897 17 Si 0.897 3.103 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.284 1.284 21 C 0.065 3.935 22 C 0.062 3.938 23 N -0.537 5.537 24 H 0.061 0.939 25 H 0.060 0.940 26 H 0.098 0.902 27 H 0.172 0.828 28 H 0.173 0.827 29 H 0.058 0.942 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.033 0.967 33 H -0.006 1.006 34 H 0.031 0.969 35 H 0.261 0.739 36 H 0.035 0.965 37 H 0.097 0.903 38 H 0.056 0.944 39 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.617 -16.836 -4.118 19.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.207 6.207 3 C 0.120 3.880 4 C -0.169 4.169 5 N -0.098 5.098 6 C -0.172 4.172 7 C 0.085 3.915 8 N -0.187 5.187 9 C -0.055 4.055 10 C -0.077 4.077 11 N -0.264 5.264 12 C 0.068 3.932 13 C -0.548 4.548 14 H 0.082 0.918 15 C -0.145 4.145 16 N -0.537 5.537 17 Si 0.725 3.275 18 H -0.197 1.197 19 H -0.211 1.211 20 H -0.210 1.210 21 C -0.063 4.063 22 C -0.063 4.063 23 N -0.272 5.272 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.116 0.884 27 H 0.189 0.811 28 H 0.190 0.810 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.051 0.949 33 H 0.011 0.989 34 H 0.049 0.951 35 H 0.071 0.929 36 H 0.053 0.947 37 H 0.115 0.885 38 H 0.074 0.926 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 8.532 -16.894 -4.126 19.371 hybrid contribution -0.399 0.765 0.527 1.010 sum 8.133 -16.129 -3.599 18.419 Atomic orbital electron populations 1.22927 0.76848 1.03186 1.02819 1.86263 1.23255 1.23831 1.87352 1.20830 0.90721 0.84891 0.91578 1.22591 0.89439 0.97383 1.07504 1.68339 1.38108 0.97635 1.05723 1.23098 0.89991 0.98310 1.05779 1.20743 0.91836 0.87968 0.90921 1.59306 1.07485 1.10886 1.40977 1.22131 0.83533 0.97615 1.02185 1.22173 0.99135 0.92920 0.93494 1.62325 1.03933 1.20582 1.39570 1.19726 0.92709 0.83915 0.96801 1.21171 1.27255 1.04846 1.01524 0.91818 1.24990 0.95185 0.97376 0.96992 1.69965 1.29564 1.20171 1.33982 0.86449 0.78020 0.79501 0.83492 1.19651 1.21062 1.21007 1.22049 0.88727 0.93498 1.02063 1.22548 1.00365 0.94142 0.89294 1.67992 1.40061 0.98125 1.21061 0.92015 0.92109 0.88356 0.81114 0.81001 0.92392 0.90194 0.90296 0.94906 0.98858 0.95051 0.92910 0.94700 0.88529 0.92607 0.89747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.33 10.39 101.05 1.05 1.38 16 2 O -0.30 -3.36 10.49 -18.75 -0.20 -3.55 16 3 C 0.30 3.80 7.49 -16.96 -0.13 3.68 16 4 C -0.01 -0.08 11.16 -17.18 -0.19 -0.27 16 5 N -0.38 -4.91 10.48 -12.74 -0.13 -5.04 16 6 C -0.01 -0.10 10.36 -17.12 -0.18 -0.27 16 7 C 0.32 4.46 6.39 -154.72 -0.99 3.48 16 8 N -0.47 -6.91 4.74 -172.94 -0.82 -7.73 16 9 C 0.07 1.10 4.79 -3.77 -0.02 1.08 16 10 C 0.05 0.91 5.61 -3.77 -0.02 0.89 16 11 N -0.54 -11.11 4.70 -235.91 -1.11 -12.22 16 12 C 0.19 4.87 4.72 -4.97 -0.02 4.85 16 13 C -0.51 -13.82 8.47 -34.44 -0.29 -14.12 16 14 H 0.06 1.70 7.13 -52.48 -0.37 1.33 16 15 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 16 N -0.90 -26.15 13.29 55.43 0.74 -25.41 16 17 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 18 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.07 1.18 5.43 -3.77 -0.02 1.16 16 22 C 0.06 0.90 5.37 -3.77 -0.02 0.88 16 23 N -0.54 -7.41 7.78 -12.31 -0.10 -7.51 16 24 H 0.06 0.58 8.11 -51.93 -0.42 0.16 16 25 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 26 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.17 1.51 8.06 -52.48 -0.42 1.08 16 28 H 0.17 1.84 7.18 -52.48 -0.38 1.47 16 29 H 0.06 0.93 8.05 -51.93 -0.42 0.51 16 30 H 0.08 1.14 7.84 -51.93 -0.41 0.74 16 31 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H -0.01 -0.17 8.12 -51.93 -0.42 -0.59 16 34 H 0.03 0.85 8.03 -51.93 -0.42 0.43 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.10 1.85 6.79 -51.93 -0.35 1.50 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.08 1.01 6.80 -51.93 -0.35 0.66 16 LS Contribution 321.15 15.07 4.84 4.84 Total: -1.00 -30.15 321.15 -8.36 -38.51 By element: Atomic # 1 Polarization: 3.45 SS G_CDS: -5.63 Total: -2.18 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -0.93 Total: 4.19 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -1.42 Total: -57.90 kcal Atomic # 8 Polarization: -3.36 SS G_CDS: -0.20 Total: -3.55 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -30.15 -8.36 -38.51 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363218956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.142 kcal (2) G-P(sol) polarization free energy of solvation -30.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds