Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35682 * 116.99619 * 2 1 4 4 C 1.38950 * 120.01603 * 180.02562 * 3 2 1 5 5 N 1.32089 * 120.10690 * 180.02562 * 4 3 2 6 6 C 1.32034 * 120.14428 * 359.97438 * 5 4 3 7 7 C 1.39154 * 120.04196 * 0.02562 * 6 5 4 8 8 N 1.38995 * 120.05550 * 179.97438 * 7 6 5 9 9 C 1.46954 * 111.00121 * 179.97438 * 8 7 6 10 10 C 1.53055 * 109.36378 * 183.18870 * 9 8 7 11 11 N 1.46953 * 109.36514 * 301.60308 * 10 9 8 12 12 C 1.46906 * 110.99875 * 183.18861 * 11 10 9 13 13 C 1.50699 * 109.47140 * 170.00105 * 12 11 10 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 11 15 15 C 1.37873 * 119.99861 * 180.02562 * 13 12 11 16 16 N 1.31522 * 120.00244 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99980 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.46950 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47074 * 119.99839 * 17 15 13 20 20 H 1.48505 * 109.46997 * 239.99833 * 17 15 13 21 21 C 1.46951 * 110.88066 * 59.32047 * 11 10 9 22 22 C 1.46956 * 111.00325 * 303.80094 * 8 7 6 23 23 N 1.32585 * 120.02408 * 0.29624 * 3 2 1 24 24 H 1.08999 * 109.47041 * 300.00163 * 1 2 3 25 25 H 1.09000 * 109.47477 * 59.99780 * 1 2 3 26 26 H 1.09000 * 109.46966 * 180.02562 * 1 2 3 27 27 H 1.08005 * 119.95176 * 0.04170 * 4 3 2 28 28 H 1.08007 * 119.98090 * 180.02562 * 6 5 4 29 29 H 1.09005 * 109.48381 * 63.22684 * 9 8 7 30 30 H 1.08996 * 109.51190 * 303.17012 * 9 8 7 31 31 H 1.09003 * 109.48634 * 181.63672 * 10 9 8 32 32 H 1.09004 * 109.48678 * 61.57576 * 10 9 8 33 33 H 1.09004 * 109.47040 * 290.00043 * 12 11 10 34 34 H 1.09000 * 109.47033 * 49.99995 * 12 11 10 35 35 H 0.96992 * 120.00038 * 179.97438 * 16 15 13 36 36 H 1.09005 * 109.48678 * 60.64401 * 21 11 10 37 37 H 1.09004 * 109.48825 * 180.70927 * 21 11 10 38 38 H 1.08998 * 109.48856 * 296.77753 * 22 8 7 39 39 H 1.09004 * 109.48212 * 56.81894 * 22 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2090 0.0000 4 6 3.4325 1.2822 -0.0005 5 7 4.0339 2.4582 0.0000 6 6 3.3193 3.5684 0.0005 7 6 1.9293 3.5022 0.0010 8 7 1.1767 4.6708 0.0021 9 6 -0.2619 4.3708 0.0019 10 6 -1.0530 5.6786 -0.0772 11 7 -0.6964 6.5336 1.0635 12 6 -1.4918 7.7687 1.0646 13 6 -1.2816 8.5004 2.3652 14 1 -0.6233 8.0889 3.1160 15 6 -1.9304 9.6946 2.5969 16 7 -2.7324 10.1955 1.6828 17 14 -1.6693 10.6020 4.2087 18 1 -0.7268 9.8344 5.0618 19 1 -1.1049 11.9477 3.9334 20 1 -2.9692 10.7449 4.9125 21 6 0.7422 6.8336 1.0636 22 6 1.5337 5.5261 1.1425 23 7 1.3232 2.3212 0.0059 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 4.0202 0.3761 -0.0016 28 1 3.8138 4.5286 0.0005 29 1 -0.5232 3.8425 0.9189 30 1 -0.5035 3.7469 -0.8586 31 1 -2.1205 5.4601 -0.0482 32 1 -0.8121 6.1936 -1.0072 33 1 -1.1783 8.4035 0.2358 34 1 -2.5474 7.5211 0.9535 35 1 -3.1892 11.0355 1.8460 36 1 1.0036 7.3618 0.1466 37 1 0.9835 7.4573 1.9244 38 1 1.2930 5.0112 2.0726 39 1 2.6013 5.7442 1.1133 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000363218956.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 14.579119 kcal Electronic energy + Delta-G solvation = -21634.603285 eV Core-core repulsion = 18384.483982 eV Total energy + Delta-G solvation = -3250.119303 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.17 seconds Orbital eigenvalues (eV) -42.52747 -40.41872 -39.24827 -37.02227 -34.92366 -34.30969 -32.14961 -31.56076 -29.67568 -28.38712 -26.97032 -25.47347 -24.56531 -23.80705 -23.25518 -20.92660 -19.48305 -19.07554 -18.44598 -17.77633 -17.45028 -17.29586 -16.61957 -16.03560 -15.95155 -15.83902 -15.38598 -15.31895 -15.10397 -14.62824 -14.12194 -13.88784 -13.52250 -13.25811 -13.00064 -12.78984 -12.64855 -12.63853 -12.48495 -12.35481 -12.23807 -12.13886 -11.98314 -11.67954 -11.22163 -10.63145 -10.53220 -10.38449 -9.18142 -9.07926 -8.20524 -6.30692 -0.19992 0.06947 1.42303 1.43308 1.56334 1.89229 2.21648 2.40702 2.63957 3.09776 3.12142 3.22158 3.42882 3.49512 3.84241 4.02540 4.06609 4.26254 4.27131 4.34865 4.37635 4.42118 4.43792 4.55913 4.71278 4.76386 4.86521 4.91751 4.95565 5.02720 5.18597 5.22880 5.43571 5.63013 5.69386 6.02906 6.04419 6.25601 6.27917 6.56106 6.72017 6.85224 7.39426 8.90934 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.031268 B = 0.003663 C = 0.003488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.259555 B = 7641.261524 C = 8026.648496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.303 6.303 3 C 0.293 3.707 4 C 0.003 3.997 5 N -0.395 5.395 6 C -0.005 4.005 7 C 0.304 3.696 8 N -0.474 5.474 9 C 0.088 3.912 10 C 0.054 3.946 11 N -0.546 5.546 12 C 0.208 3.792 13 C -0.522 4.522 14 H 0.066 0.934 15 C 0.002 3.998 16 N -0.935 5.935 17 Si 0.969 3.031 18 H -0.261 1.261 19 H -0.279 1.279 20 H -0.281 1.281 21 C 0.067 3.933 22 C 0.074 3.926 23 N -0.548 5.548 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.129 0.871 27 H 0.200 0.800 28 H 0.191 0.809 29 H 0.050 0.950 30 H 0.091 0.909 31 H 0.078 0.922 32 H 0.027 0.973 33 H -0.035 1.035 34 H 0.005 0.995 35 H 0.264 0.736 36 H 0.028 0.972 37 H 0.084 0.916 38 H 0.049 0.951 39 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.205 -18.262 -3.418 21.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.208 6.208 3 C 0.110 3.890 4 C -0.159 4.159 5 N -0.109 5.109 6 C -0.168 4.168 7 C 0.070 3.930 8 N -0.192 5.192 9 C -0.039 4.039 10 C -0.075 4.075 11 N -0.271 5.271 12 C 0.082 3.918 13 C -0.560 4.560 14 H 0.084 0.916 15 C -0.196 4.196 16 N -0.576 5.576 17 Si 0.794 3.206 18 H -0.185 1.185 19 H -0.205 1.205 20 H -0.207 1.207 21 C -0.062 4.062 22 C -0.052 4.052 23 N -0.284 5.284 24 H 0.071 0.929 25 H 0.075 0.925 26 H 0.147 0.853 27 H 0.217 0.783 28 H 0.208 0.792 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.096 0.904 32 H 0.045 0.955 33 H -0.018 1.018 34 H 0.023 0.977 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.102 0.898 38 H 0.068 0.932 39 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 10.139 -18.347 -3.432 21.241 hybrid contribution -0.887 1.071 0.255 1.413 sum 9.252 -17.276 -3.177 19.854 Atomic orbital electron populations 1.23107 0.75686 1.05056 1.02131 1.86271 1.24358 1.23023 1.87132 1.21051 0.91250 0.84945 0.91788 1.23095 0.89439 0.98070 1.05327 1.68426 1.38193 0.97980 1.06278 1.23353 0.89452 0.99172 1.04843 1.20721 0.92212 0.87605 0.92493 1.59309 1.06955 1.11721 1.41167 1.21899 0.83960 0.95760 1.02257 1.22203 0.99751 0.93497 0.92069 1.62236 1.05077 1.18542 1.41230 1.19365 0.91876 0.85281 0.95250 1.21475 1.27149 1.05277 1.02098 0.91610 1.25901 0.94756 0.98295 1.00608 1.70092 1.30573 1.20745 1.36141 0.85338 0.78100 0.78166 0.79029 1.18528 1.20453 1.20668 1.22029 0.87479 0.95554 1.01110 1.22424 1.01428 0.92090 0.89209 1.67914 1.40841 0.98542 1.21105 0.92895 0.92550 0.85277 0.78329 0.79242 0.93167 0.89056 0.90375 0.95473 1.01757 0.97717 0.92701 0.95343 0.89817 0.93216 0.86495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.39 113.37 1.18 1.73 16 2 O -0.30 -6.08 10.49 -90.00 -0.94 -7.02 16 3 C 0.29 6.75 7.49 84.75 0.63 7.38 16 4 C 0.00 0.07 11.16 84.82 0.95 1.01 16 5 N -0.39 -9.06 10.48 -194.23 -2.04 -11.09 16 6 C -0.01 -0.12 10.36 84.88 0.88 0.76 16 7 C 0.30 7.93 6.39 132.97 0.85 8.78 16 8 N -0.47 -13.37 4.74 -701.06 -3.32 -16.69 16 9 C 0.09 2.64 4.79 86.31 0.41 3.06 16 10 C 0.05 1.91 5.61 86.31 0.48 2.39 16 11 N -0.55 -23.02 4.70 -900.27 -4.23 -27.25 16 12 C 0.21 10.93 4.72 85.56 0.40 11.33 16 13 C -0.52 -28.84 8.47 25.60 0.22 -28.62 16 14 H 0.07 3.54 7.13 -2.91 -0.02 3.52 16 15 C 0.00 0.14 5.46 84.65 0.46 0.60 16 16 N -0.93 -55.64 13.29 21.45 0.28 -55.35 16 17 Si 0.97 43.42 29.54 68.60 2.03 45.44 16 18 H -0.26 -11.16 7.11 99.48 0.71 -10.46 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 21 C 0.07 2.43 5.43 86.31 0.47 2.90 16 22 C 0.07 2.06 5.37 86.31 0.46 2.53 16 23 N -0.55 -14.27 7.78 -305.56 -2.38 -16.65 16 24 H 0.05 0.93 8.11 -2.39 -0.02 0.91 16 25 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 26 H 0.13 1.20 8.14 -2.39 -0.02 1.19 16 27 H 0.20 2.83 8.06 -2.91 -0.02 2.80 16 28 H 0.19 3.52 7.18 -2.91 -0.02 3.50 16 29 H 0.05 1.58 8.05 -2.38 -0.02 1.56 16 30 H 0.09 2.53 7.84 -2.39 -0.02 2.51 16 31 H 0.08 2.75 8.07 -2.39 -0.02 2.73 16 32 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 33 H -0.04 -2.01 8.12 -2.38 -0.02 -2.03 16 34 H 0.00 0.27 8.03 -2.39 -0.02 0.25 16 35 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 36 H 0.03 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.08 3.23 6.79 -2.39 -0.02 3.22 16 38 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.12 2.51 6.80 -2.39 -0.02 2.50 16 Total: -1.00 -65.18 321.15 -2.16 -67.33 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 1.04 Total: 7.43 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 7.40 Total: 13.85 kcal Atomic # 7 Polarization: -115.36 SS G_CDS: -11.68 Total: -127.04 kcal Atomic # 8 Polarization: -6.08 SS G_CDS: -0.94 Total: -7.02 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -65.18 -2.16 -67.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000363218956.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.913 kcal (2) G-P(sol) polarization free energy of solvation -65.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.156 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.334 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.17 seconds