Wall clock time and date at job start Wed Apr 15 2020 11:43:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36149 * 116.99998 * 2 1 4 4 C 1.39475 * 120.90049 * 269.05229 * 3 2 1 5 5 N 1.38914 * 120.50686 * 0.03647 * 4 3 2 6 6 N 1.33108 * 118.99063 * 180.02562 * 4 3 2 7 7 C 1.31776 * 120.91234 * 359.97438 * 6 4 3 8 8 N 1.31744 * 121.98760 * 359.72076 * 7 6 4 9 9 C 1.33136 * 120.91670 * 0.57628 * 8 7 6 10 10 N 1.38919 * 120.51119 * 179.71531 * 9 8 7 11 11 C 1.46844 * 111.00118 * 57.91603 * 10 9 8 12 12 C 1.53041 * 109.52520 * 174.16351 * 11 10 9 13 13 C 1.53119 * 109.27351 * 59.18263 * 12 11 10 14 14 C 1.53114 * 109.16063 * 302.34399 * 13 12 11 15 15 H 1.08996 * 109.50389 * 297.71232 * 14 13 12 16 16 C 1.50711 * 109.53215 * 177.61777 * 14 13 12 17 17 H 1.07995 * 119.99691 * 274.73371 * 16 14 13 18 18 C 1.37874 * 119.99648 * 94.73764 * 16 14 13 19 19 N 1.31515 * 119.99713 * 185.48142 * 18 16 14 20 20 Si 1.86798 * 120.00587 * 5.48104 * 18 16 14 21 21 H 1.48504 * 109.46949 * 85.40869 * 20 18 16 22 22 H 1.48491 * 109.47222 * 205.41286 * 20 18 16 23 23 H 1.48507 * 109.46723 * 325.41204 * 20 18 16 24 24 C 1.46852 * 110.99671 * 293.71207 * 10 9 8 25 25 H 1.09001 * 109.47106 * 55.26892 * 1 2 3 26 26 H 1.09005 * 109.46895 * 175.26380 * 1 2 3 27 27 H 1.08993 * 109.47020 * 295.26697 * 1 2 3 28 28 H 0.97003 * 119.99945 * 0.02562 * 5 4 3 29 29 H 0.97002 * 120.00622 * 180.02562 * 5 4 3 30 30 H 1.07994 * 119.00330 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46914 * 294.18318 * 11 10 9 32 32 H 1.09008 * 109.46081 * 54.14921 * 11 10 9 33 33 H 1.09003 * 109.50420 * 179.12184 * 12 11 10 34 34 H 1.09000 * 109.50293 * 299.24111 * 12 11 10 35 35 H 1.09002 * 109.51733 * 182.44171 * 13 12 11 36 36 H 1.09003 * 109.52353 * 62.25391 * 13 12 11 37 37 H 0.96999 * 120.00337 * 180.02562 * 19 18 16 38 38 H 1.09007 * 109.46173 * 65.81988 * 24 10 9 39 39 H 1.09004 * 109.45152 * 305.84958 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0471 1.2131 0.0000 4 6 2.3899 1.8423 -1.1966 5 7 2.1054 1.2411 -2.4162 6 7 2.9937 3.0277 -1.1523 7 6 3.2668 3.6057 0.0001 8 7 2.9544 3.0478 1.1520 9 6 2.3543 1.8602 1.1964 10 7 2.0341 1.2770 2.4159 11 6 1.1580 2.1529 3.2043 12 6 0.7094 1.4213 4.4714 13 6 1.9416 1.0289 5.2914 14 6 2.8606 0.1569 4.4315 15 1 2.3395 -0.7599 4.1562 16 6 4.1041 -0.1859 5.2110 17 1 4.9407 0.4970 5.2207 18 6 4.1736 -1.3714 5.9115 19 7 5.2125 -1.6224 6.6778 20 14 2.7922 -2.6211 5.7722 21 1 3.0229 -3.4837 4.5856 22 1 2.7595 -3.4612 6.9962 23 1 1.4960 -1.9116 5.6240 24 6 3.2468 0.9252 3.1656 25 1 -0.3633 0.5855 -0.8446 26 1 -0.3633 -1.0242 -0.0849 27 1 -0.3633 0.4386 0.9293 28 1 1.6647 0.3773 -2.4400 29 1 2.3474 1.6851 -3.2440 30 1 3.7571 4.5679 0.0001 31 1 1.7009 3.0570 3.4798 32 1 0.2837 2.4212 2.6110 33 1 0.0718 2.0773 5.0640 34 1 0.1544 0.5244 4.1966 35 1 1.6291 0.4695 6.1733 36 1 2.4756 1.9278 5.5994 37 1 5.2617 -2.4566 7.1704 38 1 3.7801 1.8350 3.4413 39 1 3.8896 0.3016 2.5441 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596325868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:35 Heat of formation + Delta-G solvation = 20.337795 kcal Electronic energy + Delta-G solvation = -22470.531730 eV Core-core repulsion = 19220.662141 eV Total energy + Delta-G solvation = -3249.869589 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.19216 -38.43608 -37.95413 -35.45766 -33.74443 -32.36848 -31.01111 -30.31824 -29.62803 -26.84933 -25.03351 -24.45969 -23.57294 -22.00790 -21.24345 -19.06122 -18.33638 -17.89786 -17.56659 -16.78515 -15.98914 -15.79454 -15.47149 -14.54417 -14.46871 -14.16080 -14.07097 -13.87780 -13.52246 -12.94596 -12.76615 -12.49506 -12.23152 -12.14775 -11.68919 -11.15336 -11.07431 -10.99613 -10.71913 -10.50344 -10.20844 -9.86112 -9.73991 -9.59031 -9.31895 -8.95655 -8.92766 -8.47852 -8.28412 -8.14404 -6.04975 -4.04421 0.93795 1.31537 3.15627 3.34410 3.41668 3.45503 3.54278 3.82314 4.01041 4.33693 4.46538 4.72584 5.03371 5.18722 5.24302 5.36786 5.43860 5.46434 5.57757 5.69320 5.82069 5.96213 6.09863 6.20304 6.30277 6.35399 6.49509 6.60126 6.67329 6.80888 6.89328 7.00301 7.22646 7.33692 7.40291 7.50294 7.57484 7.71416 7.84089 8.28655 8.55152 9.00187 9.58403 11.08140 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.005495 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.169129 B = 5094.563171 C = 5292.059145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.305 6.305 3 C -0.051 4.051 4 C 0.425 3.575 5 N -0.834 5.834 6 N -0.579 5.579 7 C 0.341 3.659 8 N -0.572 5.572 9 C 0.368 3.632 10 N -0.489 5.489 11 C 0.069 3.931 12 C -0.119 4.119 13 C -0.113 4.113 14 C 0.023 3.977 15 H 0.040 0.960 16 C -0.511 4.511 17 H 0.072 0.928 18 C 0.073 3.927 19 N -0.900 5.900 20 Si 0.878 3.122 21 H -0.276 1.276 22 H -0.292 1.292 23 H -0.262 1.262 24 C 0.083 3.917 25 H 0.034 0.966 26 H 0.093 0.907 27 H 0.051 0.949 28 H 0.413 0.587 29 H 0.406 0.594 30 H 0.196 0.804 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.263 0.737 38 H 0.042 0.958 39 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.915 6.779 -15.822 20.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.218 6.218 3 C -0.106 4.106 4 C 0.179 3.821 5 N -0.379 5.379 6 N -0.306 5.306 7 C 0.050 3.950 8 N -0.296 5.296 9 C 0.134 3.866 10 N -0.213 5.213 11 C -0.057 4.057 12 C -0.157 4.157 13 C -0.151 4.151 14 C 0.003 3.997 15 H 0.059 0.941 16 C -0.549 4.549 17 H 0.090 0.910 18 C -0.129 4.129 19 N -0.538 5.538 20 Si 0.705 3.295 21 H -0.202 1.202 22 H -0.218 1.218 23 H -0.187 1.187 24 C -0.042 4.042 25 H 0.053 0.947 26 H 0.111 0.889 27 H 0.070 0.930 28 H 0.244 0.756 29 H 0.236 0.764 30 H 0.213 0.787 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.060 0.940 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.597 6.828 -15.709 20.141 hybrid contribution -0.803 -0.790 -0.225 1.149 sum -11.400 6.038 -15.934 20.501 Atomic orbital electron populations 1.23004 0.79954 1.02780 1.00412 1.86181 1.19205 1.22652 1.93749 1.19329 1.08671 0.91718 0.90882 1.18910 0.88713 0.88039 0.86403 1.42116 1.66917 1.24444 1.04412 1.67972 1.20530 1.10063 1.32027 1.24453 0.91075 0.98032 0.81434 1.68665 1.17242 1.12519 1.31138 1.20644 0.87297 0.86302 0.92333 1.60325 1.19335 1.39735 1.01906 1.22002 0.95027 0.94361 0.94359 1.21698 0.99159 0.99751 0.95088 1.21888 0.94539 1.00230 0.98456 1.19165 0.95701 0.94360 0.90437 0.94138 1.20916 1.00212 1.04999 1.28817 0.90978 1.25032 0.95497 0.97890 0.94434 1.69912 1.29943 1.25066 1.28874 0.86842 0.83609 0.81633 0.77396 1.20155 1.21808 1.18690 1.22354 0.87408 0.99191 0.95261 0.94724 0.88896 0.92990 0.75568 0.76396 0.78749 0.93339 0.92548 0.92401 0.91948 0.92686 0.92838 0.92675 0.93961 0.91487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.38 11.13 101.05 1.13 1.50 16 2 O -0.30 -4.57 9.58 -20.22 -0.19 -4.76 16 3 C -0.05 -0.79 5.83 -38.67 -0.23 -1.02 16 4 C 0.43 5.76 7.83 -154.37 -1.21 4.55 16 5 N -0.83 -7.88 9.07 31.30 0.28 -7.59 16 6 N -0.58 -7.94 10.46 -13.74 -0.14 -8.08 16 7 C 0.34 4.68 12.28 -92.21 -1.13 3.54 16 8 N -0.57 -9.46 9.92 -13.74 -0.14 -9.59 16 9 C 0.37 6.41 5.33 -154.35 -0.82 5.58 16 10 N -0.49 -9.14 4.44 -172.94 -0.77 -9.90 16 11 C 0.07 1.17 5.23 -3.83 -0.02 1.15 16 12 C -0.12 -2.04 6.09 -26.65 -0.16 -2.20 16 13 C -0.11 -2.37 5.27 -26.61 -0.14 -2.51 16 14 C 0.02 0.54 1.92 -91.69 -0.18 0.36 16 15 H 0.04 0.99 5.28 -51.93 -0.27 0.72 16 16 C -0.51 -14.32 8.86 -34.44 -0.31 -14.63 16 17 H 0.07 2.20 8.06 -52.49 -0.42 1.78 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -27.55 13.96 55.43 0.77 -26.78 16 20 Si 0.88 21.75 27.02 -169.99 -4.59 17.15 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 H -0.26 -6.19 6.78 56.52 0.38 -5.81 16 24 C 0.08 1.80 4.58 -3.83 -0.02 1.78 16 25 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.41 3.32 8.26 -40.82 -0.34 2.99 16 29 H 0.41 3.01 8.95 -40.82 -0.37 2.64 16 30 H 0.20 1.94 8.06 -52.49 -0.42 1.51 16 31 H 0.05 0.85 8.00 -51.93 -0.42 0.43 16 32 H 0.06 0.85 8.10 -51.92 -0.42 0.43 16 33 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 35 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 36 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 39 H 0.07 1.54 8.10 -51.93 -0.42 1.12 16 LS Contribution 321.52 15.07 4.85 4.85 Total: -1.00 -32.36 321.52 -8.73 -41.09 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -5.61 Total: 3.49 kcal Atomic # 6 Polarization: 3.31 SS G_CDS: -3.18 Total: 0.13 kcal Atomic # 7 Polarization: -61.96 SS G_CDS: 0.01 Total: -61.95 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.19 Total: -4.76 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -4.59 Total: 17.15 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.36 -8.73 -41.09 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.426 kcal (2) G-P(sol) polarization free energy of solvation -32.359 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds