Wall clock time and date at job start Wed Apr 15 2020 11:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.36149 * 116.99998 * 2 1 4 4 C 1.39475 * 120.90049 * 269.05229 * 3 2 1 5 5 N 1.38914 * 120.50686 * 0.03647 * 4 3 2 6 6 N 1.33108 * 118.99063 * 180.02562 * 4 3 2 7 7 C 1.31776 * 120.91234 * 359.97438 * 6 4 3 8 8 N 1.31744 * 121.98760 * 359.72076 * 7 6 4 9 9 C 1.33136 * 120.91670 * 0.57628 * 8 7 6 10 10 N 1.38919 * 120.51119 * 179.71531 * 9 8 7 11 11 C 1.46844 * 111.00118 * 57.91603 * 10 9 8 12 12 C 1.53041 * 109.52520 * 174.16351 * 11 10 9 13 13 C 1.53119 * 109.27351 * 59.18263 * 12 11 10 14 14 C 1.53114 * 109.16063 * 302.34399 * 13 12 11 15 15 H 1.08996 * 109.50389 * 297.71232 * 14 13 12 16 16 C 1.50711 * 109.53215 * 177.61777 * 14 13 12 17 17 H 1.07995 * 119.99691 * 274.73371 * 16 14 13 18 18 C 1.37874 * 119.99648 * 94.73764 * 16 14 13 19 19 N 1.31515 * 119.99713 * 185.48142 * 18 16 14 20 20 Si 1.86798 * 120.00587 * 5.48104 * 18 16 14 21 21 H 1.48504 * 109.46949 * 85.40869 * 20 18 16 22 22 H 1.48491 * 109.47222 * 205.41286 * 20 18 16 23 23 H 1.48507 * 109.46723 * 325.41204 * 20 18 16 24 24 C 1.46852 * 110.99671 * 293.71207 * 10 9 8 25 25 H 1.09001 * 109.47106 * 55.26892 * 1 2 3 26 26 H 1.09005 * 109.46895 * 175.26380 * 1 2 3 27 27 H 1.08993 * 109.47020 * 295.26697 * 1 2 3 28 28 H 0.97003 * 119.99945 * 0.02562 * 5 4 3 29 29 H 0.97002 * 120.00622 * 180.02562 * 5 4 3 30 30 H 1.07994 * 119.00330 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46914 * 294.18318 * 11 10 9 32 32 H 1.09008 * 109.46081 * 54.14921 * 11 10 9 33 33 H 1.09003 * 109.50420 * 179.12184 * 12 11 10 34 34 H 1.09000 * 109.50293 * 299.24111 * 12 11 10 35 35 H 1.09002 * 109.51733 * 182.44171 * 13 12 11 36 36 H 1.09003 * 109.52353 * 62.25391 * 13 12 11 37 37 H 0.96999 * 120.00337 * 180.02562 * 19 18 16 38 38 H 1.09007 * 109.46173 * 65.81988 * 24 10 9 39 39 H 1.09004 * 109.45152 * 305.84958 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0471 1.2131 0.0000 4 6 2.3899 1.8423 -1.1966 5 7 2.1054 1.2411 -2.4162 6 7 2.9937 3.0277 -1.1523 7 6 3.2668 3.6057 0.0001 8 7 2.9544 3.0478 1.1520 9 6 2.3543 1.8602 1.1964 10 7 2.0341 1.2770 2.4159 11 6 1.1580 2.1529 3.2043 12 6 0.7094 1.4213 4.4714 13 6 1.9416 1.0289 5.2914 14 6 2.8606 0.1569 4.4315 15 1 2.3395 -0.7599 4.1562 16 6 4.1041 -0.1859 5.2110 17 1 4.9407 0.4970 5.2207 18 6 4.1736 -1.3714 5.9115 19 7 5.2125 -1.6224 6.6778 20 14 2.7922 -2.6211 5.7722 21 1 3.0229 -3.4837 4.5856 22 1 2.7595 -3.4612 6.9962 23 1 1.4960 -1.9116 5.6240 24 6 3.2468 0.9252 3.1656 25 1 -0.3633 0.5855 -0.8446 26 1 -0.3633 -1.0242 -0.0849 27 1 -0.3633 0.4386 0.9293 28 1 1.6647 0.3773 -2.4400 29 1 2.3474 1.6851 -3.2440 30 1 3.7571 4.5679 0.0001 31 1 1.7009 3.0570 3.4798 32 1 0.2837 2.4212 2.6110 33 1 0.0718 2.0773 5.0640 34 1 0.1544 0.5244 4.1966 35 1 1.6291 0.4695 6.1733 36 1 2.4756 1.9278 5.5994 37 1 5.2617 -2.4566 7.1704 38 1 3.7801 1.8350 3.4413 39 1 3.8896 0.3016 2.5441 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596325868.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:31 Heat of formation + Delta-G solvation = -2.598918 kcal Electronic energy + Delta-G solvation = -22471.526340 eV Core-core repulsion = 19220.662141 eV Total energy + Delta-G solvation = -3250.864199 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 3.61 seconds Orbital eigenvalues (eV) -42.32888 -39.89454 -39.01214 -36.64394 -35.30107 -34.11252 -32.26266 -32.06161 -30.74108 -27.81084 -27.00587 -25.84339 -24.63823 -23.40132 -22.84361 -20.60371 -19.57046 -19.30861 -18.69159 -18.51787 -17.20808 -16.90000 -16.56272 -16.09218 -15.82419 -15.68391 -15.23280 -15.14623 -14.85707 -14.62181 -14.43531 -14.30663 -13.65553 -13.15284 -12.96166 -12.86223 -12.80649 -12.48721 -12.13114 -11.82612 -11.79034 -11.52102 -11.39618 -11.24078 -10.99295 -10.65313 -10.61335 -10.12442 -9.60295 -9.25871 -8.28327 -6.32566 -0.19387 0.20666 1.37681 1.38841 1.50789 2.19129 2.37323 2.51044 2.59360 2.89358 3.08233 3.31343 3.57716 3.96465 4.08687 4.12539 4.21047 4.32785 4.42739 4.45442 4.54837 4.59630 4.72058 4.82458 4.83437 4.93579 4.96812 5.10990 5.15148 5.23774 5.53742 5.58064 5.64128 5.70853 5.90657 6.06092 6.15835 6.33144 6.51484 6.70107 6.74275 7.22753 7.33446 8.88678 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.021748 B = 0.005495 C = 0.005290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.169129 B = 5094.563171 C = 5292.059145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.322 6.322 3 C -0.056 4.056 4 C 0.426 3.574 5 N -0.811 5.811 6 N -0.579 5.579 7 C 0.340 3.660 8 N -0.597 5.597 9 C 0.338 3.662 10 N -0.488 5.488 11 C 0.071 3.929 12 C -0.109 4.109 13 C -0.110 4.110 14 C 0.024 3.976 15 H 0.038 0.962 16 C -0.517 4.517 17 H 0.027 0.973 18 C 0.016 3.984 19 N -0.949 5.949 20 Si 0.943 3.057 21 H -0.271 1.271 22 H -0.287 1.287 23 H -0.239 1.239 24 C 0.101 3.899 25 H 0.055 0.945 26 H 0.113 0.887 27 H 0.041 0.959 28 H 0.422 0.578 29 H 0.419 0.581 30 H 0.228 0.772 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.047 0.953 36 H 0.043 0.957 37 H 0.266 0.734 38 H 0.023 0.977 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 6.864 -17.936 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.236 6.236 3 C -0.111 4.111 4 C 0.178 3.822 5 N -0.357 5.357 6 N -0.306 5.306 7 C 0.050 3.950 8 N -0.321 5.321 9 C 0.106 3.894 10 N -0.211 5.211 11 C -0.055 4.055 12 C -0.146 4.146 13 C -0.149 4.149 14 C 0.005 3.995 15 H 0.056 0.944 16 C -0.555 4.555 17 H 0.045 0.955 18 C -0.182 4.182 19 N -0.589 5.589 20 Si 0.767 3.233 21 H -0.196 1.196 22 H -0.213 1.213 23 H -0.162 1.162 24 C -0.025 4.025 25 H 0.074 0.926 26 H 0.131 0.869 27 H 0.059 0.941 28 H 0.255 0.745 29 H 0.251 0.749 30 H 0.244 0.756 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.109 0.891 34 H 0.086 0.914 35 H 0.066 0.934 36 H 0.062 0.938 37 H 0.075 0.925 38 H 0.042 0.958 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.443 6.923 -17.874 23.412 hybrid contribution 0.142 -0.739 0.301 0.811 sum -13.301 6.183 -17.572 22.890 Atomic orbital electron populations 1.23198 0.77996 1.04480 1.00765 1.86138 1.21149 1.22475 1.93825 1.19387 1.08985 0.91770 0.90999 1.19037 0.88153 0.87948 0.87103 1.42095 1.65511 1.24471 1.03618 1.68096 1.20625 1.10122 1.31778 1.25104 0.90318 0.98860 0.80728 1.68613 1.18287 1.12598 1.32599 1.20694 0.89297 0.87349 0.92093 1.60191 1.17646 1.41016 1.02267 1.22047 0.95392 0.93602 0.94471 1.21635 0.97409 1.00755 0.94848 1.21744 0.95772 0.99091 0.98257 1.19086 0.94110 0.95129 0.91183 0.94395 1.21168 1.00781 1.04285 1.29267 0.95478 1.25905 0.98240 1.00031 0.93986 1.70060 1.32472 1.25976 1.30421 0.85795 0.81145 0.78883 0.77504 1.19645 1.21326 1.16246 1.21871 0.88566 0.97637 0.94474 0.92639 0.86856 0.94059 0.74501 0.74887 0.75555 0.94242 0.90008 0.89144 0.91356 0.93375 0.93825 0.92508 0.95819 0.93753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 11.13 113.37 1.26 1.85 16 2 O -0.32 -9.01 9.58 -95.25 -0.91 -9.93 16 3 C -0.06 -1.65 5.83 22.86 0.13 -1.52 16 4 C 0.43 10.58 7.83 132.96 1.04 11.62 16 5 N -0.81 -12.90 9.07 -54.88 -0.50 -13.40 16 6 N -0.58 -14.62 10.46 -197.38 -2.07 -16.69 16 7 C 0.34 8.79 12.28 180.90 2.22 11.01 16 8 N -0.60 -19.32 9.92 -197.38 -1.96 -21.28 16 9 C 0.34 11.51 5.33 132.95 0.71 12.22 16 10 N -0.49 -17.90 4.44 -701.07 -3.11 -21.01 16 11 C 0.07 2.27 5.23 86.33 0.45 2.72 16 12 C -0.11 -3.45 6.09 30.65 0.19 -3.27 16 13 C -0.11 -4.57 5.27 30.67 0.16 -4.41 16 14 C 0.02 1.16 1.92 -11.49 -0.02 1.14 16 15 H 0.04 1.83 5.28 -2.39 -0.01 1.82 16 16 C -0.52 -30.20 8.86 25.60 0.23 -29.97 16 17 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 18 C 0.02 0.92 5.47 84.65 0.46 1.38 16 19 N -0.95 -60.20 13.96 21.45 0.30 -59.90 16 20 Si 0.94 44.97 27.02 68.60 1.85 46.82 16 21 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 22 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 23 H -0.24 -10.43 6.78 99.48 0.67 -9.76 16 24 C 0.10 4.49 4.58 86.32 0.40 4.89 16 25 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 27 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.42 5.45 8.26 -92.71 -0.77 4.69 16 29 H 0.42 4.84 8.95 -92.71 -0.83 4.01 16 30 H 0.23 4.02 8.06 -2.91 -0.02 4.00 16 31 H 0.04 1.33 8.00 -2.39 -0.02 1.32 16 32 H 0.08 2.23 8.10 -2.38 -0.02 2.21 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.04 1.85 8.14 -2.39 -0.02 1.84 16 37 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 38 H 0.02 1.11 8.12 -2.38 -0.02 1.09 16 39 H 0.04 2.12 8.10 -2.38 -0.02 2.10 16 Total: -1.00 -72.76 321.52 0.29 -72.47 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -0.55 Total: 15.24 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: 7.23 Total: 7.67 kcal Atomic # 7 Polarization: -124.94 SS G_CDS: -7.33 Total: -132.28 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.91 Total: -9.93 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 1.85 Total: 46.82 kcal Total: -72.76 0.29 -72.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325868.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.873 kcal (2) G-P(sol) polarization free energy of solvation -72.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.62 seconds