Wall clock time and date at job start Wed Apr 15 2020 11:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36143 * 116.99871 * 2 1 4 4 C 1.39477 * 120.89812 * 269.99924 * 3 2 1 5 5 N 1.38912 * 120.50715 * 0.02562 * 4 3 2 6 6 N 1.33111 * 118.98714 * 180.02562 * 4 3 2 7 7 C 1.31774 * 120.91106 * 359.97438 * 6 4 3 8 8 N 1.31734 * 121.99115 * 0.02562 * 7 6 4 9 9 C 1.33137 * 120.91827 * 359.97438 * 8 7 6 10 10 N 1.38921 * 120.50950 * 179.97438 * 9 8 7 11 11 C 1.46851 * 110.99782 * 235.79382 * 10 9 8 12 12 C 1.53043 * 109.52013 * 185.83908 * 11 10 9 13 13 C 1.53118 * 109.27503 * 300.81315 * 12 11 10 14 14 C 1.53120 * 109.16038 * 57.66004 * 13 12 11 15 15 H 1.09000 * 109.50414 * 62.28229 * 14 13 12 16 16 C 1.50705 * 109.50167 * 182.40049 * 14 13 12 17 17 H 1.07998 * 119.99826 * 119.80252 * 16 14 13 18 18 C 1.37873 * 120.00301 * 299.80029 * 16 14 13 19 19 N 1.31513 * 119.99851 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00170 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47192 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47250 * 120.00203 * 20 18 16 23 23 H 1.48499 * 109.46823 * 239.99996 * 20 18 16 24 24 C 1.46847 * 110.99816 * 359.97438 * 10 9 8 25 25 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47030 * 299.99826 * 1 2 3 27 27 H 1.09005 * 109.47363 * 60.00004 * 1 2 3 28 28 H 0.97005 * 119.99888 * 179.97438 * 5 4 3 29 29 H 0.97000 * 120.00097 * 359.97438 * 5 4 3 30 30 H 1.07995 * 119.00055 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.45855 * 305.84909 * 11 10 9 32 32 H 1.08997 * 109.46802 * 65.81960 * 11 10 9 33 33 H 1.09003 * 109.49912 * 180.87624 * 12 11 10 34 34 H 1.08991 * 109.50539 * 60.75464 * 12 11 10 35 35 H 1.08995 * 109.52843 * 297.75011 * 13 12 11 36 36 H 1.09008 * 109.57312 * 177.59279 * 13 12 11 37 37 H 0.97002 * 120.00648 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.46384 * 294.17808 * 24 10 9 39 39 H 1.09004 * 109.46571 * 54.14814 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0470 1.2131 0.0000 4 6 2.3722 1.8512 -1.1968 5 7 2.0699 1.2591 -2.4165 6 7 2.9766 3.0364 -1.1524 7 6 3.2666 3.6056 0.0001 8 7 2.9766 3.0364 1.1522 9 6 2.3721 1.8510 1.1965 10 7 2.0706 1.2583 2.4162 11 6 2.6589 -0.0841 2.5085 12 6 2.1876 -0.7614 3.7975 13 6 2.6139 0.0867 4.9991 14 6 2.0280 1.4939 4.8541 15 1 0.9395 1.4371 4.8573 16 6 2.4913 2.3525 6.0028 17 1 3.0675 3.2456 5.8113 18 6 2.1794 1.9979 7.2981 19 7 1.4780 0.9101 7.5313 20 14 2.7529 3.0625 8.7218 21 1 3.5183 4.2214 8.1963 22 1 1.5738 3.5517 9.4806 23 1 3.6220 2.2610 9.6204 24 6 2.5043 2.1055 3.5345 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.2991 1.7096 -3.2444 29 1 1.6297 0.3950 -2.4403 30 1 3.7569 4.5679 0.0001 31 1 2.3445 -0.6781 1.6504 32 1 3.7459 -0.0046 2.5165 33 1 2.6367 -1.7517 3.8734 34 1 1.1017 -0.8536 3.7842 35 1 3.7016 0.1468 5.0350 36 1 2.2437 -0.3692 5.9175 37 1 1.2588 0.6603 8.4426 38 1 3.5921 2.1744 3.5374 39 1 2.0777 3.1023 3.4217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596325869.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:40 Heat of formation + Delta-G solvation = 20.062573 kcal Electronic energy + Delta-G solvation = -22439.895052 eV Core-core repulsion = 19190.013529 eV Total energy + Delta-G solvation = -3249.881523 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 4.84 seconds Orbital eigenvalues (eV) -41.12482 -38.32795 -37.90958 -35.32498 -33.77069 -32.27270 -30.76855 -30.07702 -29.29127 -26.79640 -25.05491 -24.21193 -23.46335 -21.72771 -21.41741 -18.88552 -18.21971 -17.82567 -17.45305 -16.38053 -15.79615 -15.70269 -15.30881 -14.60105 -14.45108 -14.10110 -13.99203 -13.82721 -13.30013 -12.95165 -12.51149 -12.36721 -12.12251 -11.84142 -11.55208 -10.95928 -10.90561 -10.72704 -10.65398 -10.52925 -10.11736 -9.96652 -9.86442 -9.47611 -9.13950 -8.82625 -8.62621 -8.40908 -8.28742 -7.78304 -5.97438 -4.02922 1.10893 1.53994 3.27425 3.31705 3.39798 3.44531 3.60940 3.84265 4.23732 4.43023 4.47703 4.92435 5.12961 5.26158 5.33215 5.42093 5.53074 5.69243 5.70901 5.75133 5.99296 6.14867 6.27951 6.44451 6.48762 6.64397 6.66798 6.73534 6.94900 6.99554 7.16193 7.24426 7.38366 7.48196 7.72789 7.73353 7.78351 8.03727 8.14346 8.44096 8.51182 9.00883 9.61510 11.08949 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.004895 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.528878 B = 5718.411471 C = 6419.918389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.311 6.311 3 C -0.108 4.108 4 C 0.437 3.563 5 N -0.837 5.837 6 N -0.598 5.598 7 C 0.355 3.645 8 N -0.576 5.576 9 C 0.382 3.618 10 N -0.466 5.466 11 C 0.064 3.936 12 C -0.117 4.117 13 C -0.114 4.114 14 C 0.051 3.949 15 H 0.033 0.967 16 C -0.511 4.511 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.890 5.890 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.285 1.285 24 C 0.076 3.924 25 H 0.091 0.909 26 H 0.054 0.946 27 H 0.035 0.965 28 H 0.405 0.595 29 H 0.411 0.589 30 H 0.196 0.804 31 H 0.092 0.908 32 H 0.036 0.964 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.033 0.967 36 H 0.094 0.906 37 H 0.259 0.741 38 H 0.040 0.960 39 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 -2.234 -17.230 17.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.225 6.225 3 C -0.165 4.165 4 C 0.192 3.808 5 N -0.381 5.381 6 N -0.327 5.327 7 C 0.064 3.936 8 N -0.302 5.302 9 C 0.143 3.857 10 N -0.180 5.180 11 C -0.061 4.061 12 C -0.155 4.155 13 C -0.152 4.152 14 C 0.032 3.968 15 H 0.051 0.949 16 C -0.549 4.549 17 H 0.075 0.925 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.719 3.281 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.211 1.211 24 C -0.049 4.049 25 H 0.109 0.891 26 H 0.073 0.927 27 H 0.054 0.946 28 H 0.234 0.766 29 H 0.242 0.758 30 H 0.212 0.788 31 H 0.110 0.890 32 H 0.054 0.946 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.052 0.948 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -0.326 -1.829 -16.893 16.995 hybrid contribution 0.233 -0.027 0.418 0.480 sum -0.093 -1.855 -16.474 16.579 Atomic orbital electron populations 1.23038 0.80301 1.02750 1.00686 1.86129 1.19362 1.23361 1.93671 1.18940 1.13194 0.93273 0.91110 1.18727 0.88121 0.87785 0.86121 1.42092 1.67107 1.24409 1.04471 1.67957 1.22384 1.10530 1.31843 1.24463 0.90205 0.97566 0.81330 1.68529 1.18783 1.12308 1.30618 1.20620 0.85753 0.88520 0.90806 1.58827 1.53602 1.05343 1.00277 1.22396 0.96362 0.86507 1.00856 1.21721 1.01156 0.97990 0.94648 1.21720 0.98528 0.97681 0.97320 1.18764 0.96774 0.92094 0.89140 0.94903 1.21143 1.34145 1.08956 0.90691 0.92494 1.24924 0.95002 0.95167 0.98739 1.69895 1.38828 1.24004 1.20143 0.86549 0.78453 0.80625 0.82461 1.19742 1.21089 1.21108 1.22366 0.98316 0.95414 0.88783 0.89067 0.92711 0.94606 0.76570 0.75798 0.78764 0.89037 0.94570 0.92677 0.91918 0.94807 0.88807 0.93126 0.94146 0.90884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.13 101.05 1.13 1.44 16 2 O -0.31 -4.37 7.15 -20.19 -0.14 -4.52 16 3 C -0.11 -1.69 5.52 -38.67 -0.21 -1.90 16 4 C 0.44 6.08 7.83 -154.37 -1.21 4.87 16 5 N -0.84 -8.10 9.07 31.30 0.28 -7.82 16 6 N -0.60 -8.60 10.46 -13.74 -0.14 -8.75 16 7 C 0.36 5.20 12.28 -92.22 -1.13 4.07 16 8 N -0.58 -10.23 8.85 -13.74 -0.12 -10.35 16 9 C 0.38 6.92 6.42 -154.35 -0.99 5.93 16 10 N -0.47 -9.10 4.62 -172.94 -0.80 -9.90 16 11 C 0.06 1.16 5.16 -3.83 -0.02 1.14 16 12 C -0.12 -2.24 6.09 -26.65 -0.16 -2.41 16 13 C -0.11 -2.67 5.03 -26.61 -0.13 -2.80 16 14 C 0.05 1.28 2.26 -91.68 -0.21 1.07 16 15 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 16 C -0.51 -14.01 8.56 -34.44 -0.29 -14.31 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 18 C 0.06 1.73 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.17 11.36 55.43 0.63 -24.54 16 20 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 C 0.08 1.70 3.89 -3.83 -0.01 1.68 16 25 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 26 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.40 3.15 8.95 -40.82 -0.37 2.78 16 29 H 0.41 3.34 8.26 -40.82 -0.34 3.00 16 30 H 0.20 2.12 8.06 -52.49 -0.42 1.70 16 31 H 0.09 1.53 5.45 -51.93 -0.28 1.25 16 32 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.09 2.44 6.16 -51.92 -0.32 2.12 16 37 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.04 0.93 8.13 -51.93 -0.42 0.50 16 39 H 0.07 1.68 7.73 -51.93 -0.40 1.28 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -30.33 315.79 -9.38 -39.71 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.48 Total: 4.72 kcal Atomic # 6 Polarization: 3.77 SS G_CDS: -3.35 Total: 0.42 kcal Atomic # 7 Polarization: -61.21 SS G_CDS: -0.15 Total: -61.36 kcal Atomic # 8 Polarization: -4.37 SS G_CDS: -0.14 Total: -4.52 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.33 -9.38 -39.71 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325869.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.773 kcal (2) G-P(sol) polarization free energy of solvation -30.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.711 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.84 seconds