Wall clock time and date at job start Wed Apr 15 2020 11:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.36143 * 116.99871 * 2 1 4 4 C 1.39477 * 120.89812 * 269.99924 * 3 2 1 5 5 N 1.38912 * 120.50715 * 0.02562 * 4 3 2 6 6 N 1.33111 * 118.98714 * 180.02562 * 4 3 2 7 7 C 1.31774 * 120.91106 * 359.97438 * 6 4 3 8 8 N 1.31734 * 121.99115 * 0.02562 * 7 6 4 9 9 C 1.33137 * 120.91827 * 359.97438 * 8 7 6 10 10 N 1.38921 * 120.50950 * 179.97438 * 9 8 7 11 11 C 1.46851 * 110.99782 * 235.79382 * 10 9 8 12 12 C 1.53043 * 109.52013 * 185.83908 * 11 10 9 13 13 C 1.53118 * 109.27503 * 300.81315 * 12 11 10 14 14 C 1.53120 * 109.16038 * 57.66004 * 13 12 11 15 15 H 1.09000 * 109.50414 * 62.28229 * 14 13 12 16 16 C 1.50705 * 109.50167 * 182.40049 * 14 13 12 17 17 H 1.07998 * 119.99826 * 119.80252 * 16 14 13 18 18 C 1.37873 * 120.00301 * 299.80029 * 16 14 13 19 19 N 1.31513 * 119.99851 * 0.02562 * 18 16 14 20 20 Si 1.86797 * 120.00170 * 180.02562 * 18 16 14 21 21 H 1.48496 * 109.47192 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47250 * 120.00203 * 20 18 16 23 23 H 1.48499 * 109.46823 * 239.99996 * 20 18 16 24 24 C 1.46847 * 110.99816 * 359.97438 * 10 9 8 25 25 H 1.08999 * 109.47390 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.47030 * 299.99826 * 1 2 3 27 27 H 1.09005 * 109.47363 * 60.00004 * 1 2 3 28 28 H 0.97005 * 119.99888 * 179.97438 * 5 4 3 29 29 H 0.97000 * 120.00097 * 359.97438 * 5 4 3 30 30 H 1.07995 * 119.00055 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.45855 * 305.84909 * 11 10 9 32 32 H 1.08997 * 109.46802 * 65.81960 * 11 10 9 33 33 H 1.09003 * 109.49912 * 180.87624 * 12 11 10 34 34 H 1.08991 * 109.50539 * 60.75464 * 12 11 10 35 35 H 1.08995 * 109.52843 * 297.75011 * 13 12 11 36 36 H 1.09008 * 109.57312 * 177.59279 * 13 12 11 37 37 H 0.97002 * 120.00648 * 179.97438 * 19 18 16 38 38 H 1.08997 * 109.46384 * 294.17808 * 24 10 9 39 39 H 1.09004 * 109.46571 * 54.14814 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0470 1.2131 0.0000 4 6 2.3722 1.8512 -1.1968 5 7 2.0699 1.2591 -2.4165 6 7 2.9766 3.0364 -1.1524 7 6 3.2666 3.6056 0.0001 8 7 2.9766 3.0364 1.1522 9 6 2.3721 1.8510 1.1965 10 7 2.0706 1.2583 2.4162 11 6 2.6589 -0.0841 2.5085 12 6 2.1876 -0.7614 3.7975 13 6 2.6139 0.0867 4.9991 14 6 2.0280 1.4939 4.8541 15 1 0.9395 1.4371 4.8573 16 6 2.4913 2.3525 6.0028 17 1 3.0675 3.2456 5.8113 18 6 2.1794 1.9979 7.2981 19 7 1.4780 0.9101 7.5313 20 14 2.7529 3.0625 8.7218 21 1 3.5183 4.2214 8.1963 22 1 1.5738 3.5517 9.4806 23 1 3.6220 2.2610 9.6204 24 6 2.5043 2.1055 3.5345 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 2.2991 1.7096 -3.2444 29 1 1.6297 0.3950 -2.4403 30 1 3.7569 4.5679 0.0001 31 1 2.3445 -0.6781 1.6504 32 1 3.7459 -0.0046 2.5165 33 1 2.6367 -1.7517 3.8734 34 1 1.1017 -0.8536 3.7842 35 1 3.7016 0.1468 5.0350 36 1 2.2437 -0.3692 5.9175 37 1 1.2588 0.6603 8.4426 38 1 3.5921 2.1744 3.5374 39 1 2.0777 3.1023 3.4217 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596325869.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:38 Heat of formation + Delta-G solvation = 0.461693 kcal Electronic energy + Delta-G solvation = -22440.745010 eV Core-core repulsion = 19190.013529 eV Total energy + Delta-G solvation = -3250.731481 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.35 seconds Orbital eigenvalues (eV) -42.33990 -39.84003 -39.01884 -36.60469 -35.37753 -33.88765 -32.16304 -31.78616 -30.56853 -27.80700 -27.01879 -25.69267 -24.69494 -23.13734 -23.09281 -20.56603 -19.44573 -19.16185 -18.58240 -18.16575 -17.02633 -16.87762 -16.64780 -16.27271 -15.86725 -15.41349 -15.21765 -15.19945 -14.72754 -14.61878 -14.35007 -14.05370 -13.48557 -13.10422 -12.88469 -12.76101 -12.66409 -12.52807 -12.00157 -11.91654 -11.79327 -11.63164 -11.42169 -11.19084 -10.94834 -10.68978 -10.38991 -9.91505 -9.61317 -9.05196 -8.08563 -6.21945 -0.06935 0.34985 1.41289 1.43192 1.54988 2.25406 2.43769 2.50328 2.60330 3.05190 3.18928 3.33786 3.64945 4.05080 4.14479 4.16826 4.22952 4.38931 4.45507 4.57891 4.60695 4.67970 4.82204 4.84874 4.91315 5.03000 5.11884 5.20200 5.27030 5.42602 5.60632 5.63959 5.80593 5.99545 6.08444 6.12488 6.19263 6.39550 6.48982 6.79515 6.88099 7.34143 7.45700 8.96680 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.027978 B = 0.004895 C = 0.004360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.528878 B = 5718.411471 C = 6419.918389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.315 6.315 3 C -0.107 4.107 4 C 0.437 3.563 5 N -0.812 5.812 6 N -0.596 5.596 7 C 0.354 3.646 8 N -0.608 5.608 9 C 0.354 3.646 10 N -0.474 5.474 11 C 0.071 3.929 12 C -0.107 4.107 13 C -0.106 4.106 14 C 0.052 3.948 15 H -0.001 1.001 16 C -0.534 4.534 17 H 0.049 0.951 18 C 0.018 3.982 19 N -0.914 5.914 20 Si 0.954 3.046 21 H -0.269 1.269 22 H -0.280 1.280 23 H -0.278 1.278 24 C 0.101 3.899 25 H 0.119 0.881 26 H 0.029 0.971 27 H 0.054 0.946 28 H 0.418 0.582 29 H 0.422 0.578 30 H 0.227 0.773 31 H 0.113 0.887 32 H 0.030 0.970 33 H 0.082 0.918 34 H 0.058 0.942 35 H 0.025 0.975 36 H 0.065 0.935 37 H 0.261 0.739 38 H 0.027 0.973 39 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.024 -2.567 -19.261 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.229 6.229 3 C -0.165 4.165 4 C 0.191 3.809 5 N -0.357 5.357 6 N -0.325 5.325 7 C 0.064 3.936 8 N -0.335 5.335 9 C 0.117 3.883 10 N -0.189 5.189 11 C -0.054 4.054 12 C -0.145 4.145 13 C -0.145 4.145 14 C 0.033 3.967 15 H 0.017 0.983 16 C -0.573 4.573 17 H 0.068 0.932 18 C -0.181 4.181 19 N -0.553 5.553 20 Si 0.780 3.220 21 H -0.194 1.194 22 H -0.206 1.206 23 H -0.204 1.204 24 C -0.026 4.026 25 H 0.137 0.863 26 H 0.048 0.952 27 H 0.072 0.928 28 H 0.250 0.750 29 H 0.254 0.746 30 H 0.243 0.757 31 H 0.131 0.869 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.077 0.923 35 H 0.044 0.956 36 H 0.084 0.916 37 H 0.070 0.930 38 H 0.045 0.955 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.093 -2.176 -18.988 19.113 hybrid contribution 0.125 0.073 0.901 0.913 sum 0.031 -2.103 -18.087 18.209 Atomic orbital electron populations 1.23190 0.78811 1.04486 1.00347 1.86090 1.20645 1.22565 1.93591 1.18904 1.13198 0.93568 0.90789 1.18867 0.87520 0.87601 0.86948 1.42061 1.65598 1.24493 1.03566 1.68080 1.22326 1.10677 1.31446 1.25088 0.89547 0.98399 0.80614 1.68486 1.20029 1.12586 1.32374 1.20723 0.87451 0.89355 0.90777 1.58822 1.54550 1.05344 1.00212 1.22367 0.95935 0.86250 1.00813 1.21611 1.01024 0.98595 0.93252 1.21513 0.97593 0.97222 0.98128 1.18661 0.94579 0.93228 0.90251 0.98328 1.21454 1.34497 1.09266 0.92080 0.93241 1.25666 0.95033 0.96346 1.01089 1.70019 1.39400 1.25133 1.20735 0.85561 0.78103 0.79051 0.79274 1.19387 1.20568 1.20404 1.21845 0.96975 0.94957 0.88784 0.86326 0.95228 0.92762 0.75044 0.74556 0.75661 0.86941 0.95140 0.89914 0.92327 0.95635 0.91637 0.92958 0.95460 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.13 113.37 1.26 1.81 16 2 O -0.31 -8.12 7.15 -95.17 -0.68 -8.80 16 3 C -0.11 -3.18 5.52 22.86 0.13 -3.05 16 4 C 0.44 11.08 7.83 132.96 1.04 12.12 16 5 N -0.81 -12.94 9.07 -54.88 -0.50 -13.44 16 6 N -0.60 -15.81 10.46 -197.39 -2.07 -17.88 16 7 C 0.35 9.87 12.28 180.91 2.22 12.09 16 8 N -0.61 -21.49 8.85 -197.39 -1.75 -23.24 16 9 C 0.35 12.74 6.42 132.94 0.85 13.59 16 10 N -0.47 -18.77 4.62 -701.07 -3.24 -22.01 16 11 C 0.07 2.54 5.16 86.33 0.45 2.99 16 12 C -0.11 -4.08 6.09 30.65 0.19 -3.89 16 13 C -0.11 -5.12 5.03 30.67 0.15 -4.97 16 14 C 0.05 2.71 2.26 -11.48 -0.03 2.68 16 15 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 16 C -0.53 -30.40 8.56 25.60 0.22 -30.18 16 17 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 18 C 0.02 0.99 5.30 84.65 0.45 1.44 16 19 N -0.91 -52.99 11.36 21.45 0.24 -52.75 16 20 Si 0.95 44.31 29.54 68.60 2.03 46.33 16 21 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.71 7.11 99.48 0.71 -12.01 16 23 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 24 C 0.10 4.65 3.89 86.33 0.34 4.99 16 25 H 0.12 1.82 8.14 -2.39 -0.02 1.80 16 26 H 0.03 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.93 8.14 -2.38 -0.02 0.91 16 28 H 0.42 4.95 8.95 -92.70 -0.83 4.12 16 29 H 0.42 5.25 8.26 -92.71 -0.77 4.49 16 30 H 0.23 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.11 3.57 5.45 -2.39 -0.01 3.56 16 32 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 35 H 0.02 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 3.52 6.16 -2.38 -0.01 3.51 16 37 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 38 H 0.03 1.30 8.13 -2.39 -0.02 1.28 16 39 H 0.06 2.76 7.73 -2.38 -0.02 2.75 16 Total: -1.00 -67.26 315.79 0.80 -66.46 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -0.51 Total: 15.69 kcal Atomic # 6 Polarization: 2.36 SS G_CDS: 7.27 Total: 9.63 kcal Atomic # 7 Polarization: -122.00 SS G_CDS: -7.31 Total: -129.31 kcal Atomic # 8 Polarization: -8.12 SS G_CDS: -0.68 Total: -8.80 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Total: -67.26 0.80 -66.46 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596325869.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.922 kcal (2) G-P(sol) polarization free energy of solvation -67.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.35 seconds