Wall clock time and date at job start Wed Apr 15 2020 11:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35516 * 116.99783 * 2 1 4 4 C 1.39435 * 120.46385 * 180.02562 * 3 2 1 5 5 C 1.38205 * 118.50692 * 180.02562 * 4 3 2 6 6 N 1.32460 * 119.26601 * 359.97438 * 5 4 3 7 7 C 1.32459 * 120.88786 * 0.02562 * 6 5 4 8 8 N 1.38402 * 119.18608 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99901 * 0.02562 * 8 7 6 10 10 C 1.53046 * 109.45868 * 204.99725 * 9 8 7 11 11 C 1.53186 * 109.31235 * 178.61421 * 10 9 8 12 12 N 1.46927 * 108.77731 * 54.63709 * 11 10 9 13 13 C 1.36932 * 120.63177 * 126.41349 * 12 11 10 14 14 H 1.08004 * 120.00038 * 207.66728 * 13 12 11 15 15 C 1.38814 * 119.99982 * 27.66313 * 13 12 11 16 16 N 1.31612 * 120.00200 * 17.37133 * 15 13 12 17 17 Si 1.86798 * 119.99944 * 197.36766 * 15 13 12 18 18 H 1.48503 * 109.47280 * 59.99851 * 17 15 13 19 19 H 1.48501 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47276 * 300.00228 * 17 15 13 21 21 C 1.46931 * 118.73618 * 306.39136 * 12 11 10 22 22 C 1.53039 * 109.46155 * 84.93126 * 9 8 7 23 23 N 1.32484 * 121.62926 * 0.27122 * 7 6 5 24 24 H 1.08996 * 109.47091 * 299.99889 * 1 2 3 25 25 H 1.08995 * 109.47122 * 60.00195 * 1 2 3 26 26 H 1.09003 * 109.46958 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.75090 * 359.97438 * 4 3 2 28 28 H 1.07992 * 120.36545 * 180.02562 * 5 4 3 29 29 H 0.97001 * 119.99819 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.44829 * 324.96342 * 9 8 7 31 31 H 1.09002 * 109.49865 * 298.56891 * 10 9 8 32 32 H 1.09002 * 109.49442 * 58.66697 * 10 9 8 33 33 H 1.08996 * 109.58858 * 174.42315 * 11 10 9 34 34 H 1.09002 * 109.58973 * 294.85305 * 11 10 9 35 35 H 0.96996 * 120.00390 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.58954 * 293.81785 * 21 12 11 37 37 H 1.08998 * 109.69942 * 173.46367 * 21 12 11 38 38 H 1.08998 * 109.49975 * 301.33925 * 22 9 8 39 39 H 1.09001 * 109.49731 * 61.39879 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4360 1.2918 -0.0005 5 6 4.0209 2.5439 0.0000 6 7 3.2481 3.6197 0.0005 7 6 1.9282 3.5087 0.0010 8 7 1.1544 4.6563 0.0021 9 6 1.7968 5.9729 0.0021 10 6 0.8455 7.0044 0.6131 11 6 1.5334 8.3727 0.6431 12 7 1.9901 8.7024 -0.7139 13 6 1.6341 9.8870 -1.3013 14 1 1.5658 9.9574 -2.3768 15 6 1.3610 10.9975 -0.5143 16 7 1.7621 11.0307 0.7388 17 14 0.4244 12.4446 -1.2339 18 1 -0.9138 11.9905 -1.6904 19 1 0.2640 13.4954 -0.1969 20 1 1.1788 12.9987 -2.3867 21 6 2.8364 7.7370 -1.4285 22 6 2.1339 6.3758 -1.4353 23 7 1.3303 2.3265 0.0064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0433 0.3987 -0.0005 28 1 5.0962 2.6441 -0.0008 29 1 0.1868 4.5887 0.0021 30 1 2.7128 5.9298 0.5914 31 1 -0.0605 7.0658 0.0101 32 1 0.5875 6.7045 1.6288 33 1 0.8272 9.1293 0.9849 34 1 2.3888 8.3370 1.3178 35 1 1.5716 11.8068 1.2886 36 1 3.7980 7.6494 -0.9227 37 1 2.9921 8.0731 -2.4536 38 1 2.7927 5.6285 -1.8777 39 1 1.2159 6.4425 -2.0192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609333758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:51 Heat of formation + Delta-G solvation = 42.398959 kcal Electronic energy + Delta-G solvation = -21544.224225 eV Core-core repulsion = 18295.311281 eV Total energy + Delta-G solvation = -3248.912945 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.06249 -38.79038 -37.75846 -35.09890 -33.17817 -32.33445 -30.86487 -29.88625 -29.00677 -27.55052 -25.08910 -23.79841 -23.21825 -22.12679 -21.47878 -19.38335 -18.59703 -18.04308 -16.74904 -16.28787 -16.03738 -15.30395 -15.22859 -14.78999 -14.55467 -14.36535 -13.78261 -13.67113 -13.54305 -13.02153 -12.79840 -12.34382 -12.17801 -11.84156 -11.45932 -11.12779 -11.01198 -10.82073 -10.71174 -10.67922 -10.35099 -10.25719 -10.01118 -9.79012 -9.55594 -9.39888 -9.17091 -8.47687 -7.88769 -6.69263 -5.79702 -3.21198 1.25843 1.34288 2.75697 3.11521 3.38679 3.44362 3.45667 3.98062 4.23014 4.49787 4.84616 4.92453 5.06310 5.09994 5.30886 5.34041 5.39505 5.41999 5.49416 5.53695 5.60540 5.90811 6.02825 6.09553 6.30263 6.50074 6.52519 6.56724 6.66021 6.80458 6.85415 6.98550 7.06390 7.25955 7.35288 7.57082 7.66673 7.79424 8.44399 8.46345 9.20668 9.84120 10.40810 11.29270 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.040878 B = 0.003493 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.799958 B = 8014.472727 C = 8273.732059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.305 6.305 3 C 0.399 3.601 4 C -0.318 4.318 5 C 0.217 3.783 6 N -0.580 5.580 7 C 0.603 3.397 8 N -0.686 5.686 9 C 0.166 3.834 10 C -0.148 4.148 11 C 0.176 3.824 12 N -0.593 5.593 13 C -0.253 4.253 14 H 0.065 0.935 15 C 0.002 3.998 16 N -0.903 5.903 17 Si 0.902 3.098 18 H -0.284 1.284 19 H -0.290 1.290 20 H -0.283 1.283 21 C 0.149 3.851 22 C -0.138 4.138 23 N -0.632 5.632 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.096 0.904 27 H 0.144 0.856 28 H 0.172 0.828 29 H 0.408 0.592 30 H 0.087 0.913 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.092 0.908 34 H 0.022 0.978 35 H 0.255 0.745 36 H 0.022 0.978 37 H 0.055 0.945 38 H 0.054 0.946 39 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.150 -19.413 -0.239 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.209 6.209 3 C 0.210 3.790 4 C -0.345 4.345 5 C 0.051 3.949 6 N -0.307 5.307 7 C 0.246 3.754 8 N -0.319 5.319 9 C 0.062 3.938 10 C -0.188 4.188 11 C 0.049 3.951 12 N -0.316 5.316 13 C -0.383 4.383 14 H 0.083 0.917 15 C -0.196 4.196 16 N -0.548 5.548 17 Si 0.732 3.268 18 H -0.211 1.211 19 H -0.216 1.216 20 H -0.209 1.209 21 C 0.022 3.978 22 C -0.178 4.178 23 N -0.372 5.372 24 H 0.079 0.921 25 H 0.079 0.921 26 H 0.114 0.886 27 H 0.162 0.838 28 H 0.189 0.811 29 H 0.244 0.756 30 H 0.105 0.895 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.040 0.960 35 H 0.065 0.935 36 H 0.039 0.961 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.564 -18.532 -0.109 18.541 hybrid contribution -0.704 -0.058 -0.330 0.780 sum -1.268 -18.590 -0.439 18.639 Atomic orbital electron populations 1.22887 0.77044 1.02919 1.02787 1.86234 1.23161 1.24468 1.87034 1.19731 0.89235 0.83902 0.86160 1.21492 0.92342 1.00871 1.19780 1.22778 1.00061 0.86002 0.86066 1.68075 1.03983 1.33686 1.24950 1.19006 0.85670 0.84844 0.85891 1.44831 1.08112 1.02346 1.76657 1.21094 0.96703 0.78479 0.97493 1.22577 0.98991 0.98167 0.99091 1.20737 0.97121 0.90902 0.86296 1.44092 1.55808 1.17167 1.14485 1.19155 1.40729 0.86917 0.91480 0.91685 1.25030 1.00835 0.97157 0.96594 1.70010 1.47204 1.30001 1.07550 0.86370 0.80269 0.82052 0.78081 1.21067 1.21637 1.20885 1.20860 0.92405 0.87970 0.96550 1.22395 1.00752 0.98925 0.95745 1.67407 1.41438 0.98062 1.30269 0.92109 0.92115 0.88583 0.83814 0.81115 0.75576 0.89466 0.92202 0.92738 0.88993 0.96022 0.93544 0.96053 0.92667 0.92707 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 10.41 101.05 1.05 1.40 16 2 O -0.30 -3.58 10.49 -18.24 -0.19 -3.77 16 3 C 0.40 5.31 7.53 -16.72 -0.13 5.19 16 4 C -0.32 -3.66 10.12 -39.15 -0.40 -4.05 16 5 C 0.22 2.58 11.29 -17.29 -0.20 2.38 16 6 N -0.58 -8.87 9.20 -14.00 -0.13 -8.99 16 7 C 0.60 9.45 8.40 -322.87 -2.71 6.74 16 8 N -0.69 -10.56 5.22 -55.76 -0.29 -10.86 16 9 C 0.17 2.87 2.41 -67.89 -0.16 2.70 16 10 C -0.15 -2.74 5.55 -26.61 -0.15 -2.89 16 11 C 0.18 4.10 5.31 -3.71 -0.02 4.08 16 12 N -0.59 -14.70 3.00 -172.32 -0.52 -15.21 16 13 C -0.25 -6.90 9.59 -15.06 -0.14 -7.04 16 14 H 0.07 1.74 7.89 -52.48 -0.41 1.33 16 15 C 0.00 0.07 4.91 -17.43 -0.09 -0.02 16 16 N -0.90 -25.91 11.19 55.49 0.62 -25.29 16 17 Si 0.90 21.51 29.59 -169.99 -5.03 16.48 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 19 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C 0.15 3.15 6.51 -3.71 -0.02 3.13 16 22 C -0.14 -2.49 5.66 -26.61 -0.15 -2.64 16 23 N -0.63 -9.29 9.40 -13.99 -0.13 -9.42 16 24 H 0.06 0.56 8.11 -51.93 -0.42 0.14 16 25 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 26 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.14 1.27 8.06 -52.48 -0.42 0.85 16 28 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.41 5.72 8.72 -40.82 -0.36 5.36 16 30 H 0.09 1.63 7.50 -51.93 -0.39 1.24 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 34 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 36 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.05 1.15 7.94 -51.93 -0.41 0.74 16 38 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 LS Contribution 322.82 15.07 4.86 4.86 Total: -1.00 -30.57 322.82 -9.58 -40.15 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.67 Total: 3.07 kcal Atomic # 6 Polarization: 12.09 SS G_CDS: -3.11 Total: 8.98 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -0.45 Total: -69.78 kcal Atomic # 8 Polarization: -3.58 SS G_CDS: -0.19 Total: -3.77 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.57 -9.58 -40.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609333758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.552 kcal (2) G-P(sol) polarization free energy of solvation -30.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds