Wall clock time and date at job start Wed Apr 15 2020 11:43:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35516 * 116.99783 * 2 1 4 4 C 1.39435 * 120.46385 * 180.02562 * 3 2 1 5 5 C 1.38205 * 118.50692 * 180.02562 * 4 3 2 6 6 N 1.32460 * 119.26601 * 359.97438 * 5 4 3 7 7 C 1.32459 * 120.88786 * 0.02562 * 6 5 4 8 8 N 1.38402 * 119.18608 * 179.97438 * 7 6 5 9 9 C 1.46498 * 119.99901 * 0.02562 * 8 7 6 10 10 C 1.53046 * 109.45868 * 204.99725 * 9 8 7 11 11 C 1.53186 * 109.31235 * 178.61421 * 10 9 8 12 12 N 1.46927 * 108.77731 * 54.63709 * 11 10 9 13 13 C 1.36932 * 120.63177 * 126.41349 * 12 11 10 14 14 H 1.08004 * 120.00038 * 207.66728 * 13 12 11 15 15 C 1.38814 * 119.99982 * 27.66313 * 13 12 11 16 16 N 1.31612 * 120.00200 * 17.37133 * 15 13 12 17 17 Si 1.86798 * 119.99944 * 197.36766 * 15 13 12 18 18 H 1.48503 * 109.47280 * 59.99851 * 17 15 13 19 19 H 1.48501 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47276 * 300.00228 * 17 15 13 21 21 C 1.46931 * 118.73618 * 306.39136 * 12 11 10 22 22 C 1.53039 * 109.46155 * 84.93126 * 9 8 7 23 23 N 1.32484 * 121.62926 * 0.27122 * 7 6 5 24 24 H 1.08996 * 109.47091 * 299.99889 * 1 2 3 25 25 H 1.08995 * 109.47122 * 60.00195 * 1 2 3 26 26 H 1.09003 * 109.46958 * 180.02562 * 1 2 3 27 27 H 1.08004 * 120.75090 * 359.97438 * 4 3 2 28 28 H 1.07992 * 120.36545 * 180.02562 * 5 4 3 29 29 H 0.97001 * 119.99819 * 179.97438 * 8 7 6 30 30 H 1.09001 * 109.44829 * 324.96342 * 9 8 7 31 31 H 1.09002 * 109.49865 * 298.56891 * 10 9 8 32 32 H 1.09002 * 109.49442 * 58.66697 * 10 9 8 33 33 H 1.08996 * 109.58858 * 174.42315 * 11 10 9 34 34 H 1.09002 * 109.58973 * 294.85305 * 11 10 9 35 35 H 0.96996 * 120.00390 * 179.97438 * 16 15 13 36 36 H 1.09001 * 109.58954 * 293.81785 * 21 12 11 37 37 H 1.08998 * 109.69942 * 173.46367 * 21 12 11 38 38 H 1.08998 * 109.49975 * 301.33925 * 22 9 8 39 39 H 1.09001 * 109.49731 * 61.39879 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 3.4360 1.2918 -0.0005 5 6 4.0209 2.5439 0.0000 6 7 3.2481 3.6197 0.0005 7 6 1.9282 3.5087 0.0010 8 7 1.1544 4.6563 0.0021 9 6 1.7968 5.9729 0.0021 10 6 0.8455 7.0044 0.6131 11 6 1.5334 8.3727 0.6431 12 7 1.9901 8.7024 -0.7139 13 6 1.6341 9.8870 -1.3013 14 1 1.5658 9.9574 -2.3768 15 6 1.3610 10.9975 -0.5143 16 7 1.7621 11.0307 0.7388 17 14 0.4244 12.4446 -1.2339 18 1 -0.9138 11.9905 -1.6904 19 1 0.2640 13.4954 -0.1969 20 1 1.1788 12.9987 -2.3867 21 6 2.8364 7.7370 -1.4285 22 6 2.1339 6.3758 -1.4353 23 7 1.3303 2.3265 0.0064 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 4.0433 0.3987 -0.0005 28 1 5.0962 2.6441 -0.0008 29 1 0.1868 4.5887 0.0021 30 1 2.7128 5.9298 0.5914 31 1 -0.0605 7.0658 0.0101 32 1 0.5875 6.7045 1.6288 33 1 0.8272 9.1293 0.9849 34 1 2.3888 8.3370 1.3178 35 1 1.5716 11.8068 1.2886 36 1 3.7980 7.6494 -0.9227 37 1 2.9921 8.0731 -2.4536 38 1 2.7927 5.6285 -1.8777 39 1 1.2159 6.4425 -2.0192 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609333758.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:50 Heat of formation + Delta-G solvation = 23.196838 kcal Electronic energy + Delta-G solvation = -21545.056892 eV Core-core repulsion = 18295.311281 eV Total energy + Delta-G solvation = -3249.745611 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -42.07323 -39.90714 -39.13027 -36.58624 -34.43546 -33.84699 -32.31682 -31.48590 -30.49572 -28.34760 -26.89572 -24.78158 -24.57114 -23.75450 -22.98254 -20.97577 -19.61125 -19.25285 -18.54475 -17.19907 -17.14382 -16.86561 -16.32784 -16.21508 -15.68628 -15.52654 -15.35890 -15.25027 -14.74169 -14.58754 -14.38225 -14.01635 -13.21350 -12.99350 -12.89119 -12.75631 -12.56260 -12.53724 -12.27645 -12.03128 -11.92939 -11.80583 -11.69255 -11.34306 -11.25894 -10.57618 -10.49082 -10.22107 -9.01157 -8.69744 -7.86984 -5.31454 0.28505 0.32490 1.48975 1.50859 1.57917 1.74197 2.13245 2.52873 2.94811 3.28343 3.28674 3.65461 3.78413 3.93212 4.08106 4.09282 4.38806 4.39190 4.40822 4.47303 4.49427 4.58809 4.67593 4.74266 4.83918 4.89976 5.03218 5.09837 5.17621 5.28700 5.34518 5.48918 5.65414 5.71319 5.82622 5.99819 6.21982 6.39941 6.52773 7.15675 7.39511 7.86011 8.38131 9.19966 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.040878 B = 0.003493 C = 0.003383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.799958 B = 8014.472727 C = 8273.732059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.308 6.308 3 C 0.381 3.619 4 C -0.306 4.306 5 C 0.212 3.788 6 N -0.606 5.606 7 C 0.588 3.412 8 N -0.686 5.686 9 C 0.184 3.816 10 C -0.132 4.132 11 C 0.182 3.818 12 N -0.610 5.610 13 C -0.266 4.266 14 H 0.066 0.934 15 C -0.048 4.048 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.278 1.278 19 H -0.294 1.294 20 H -0.277 1.277 21 C 0.148 3.852 22 C -0.120 4.120 23 N -0.640 5.640 24 H 0.055 0.945 25 H 0.055 0.945 26 H 0.128 0.872 27 H 0.174 0.826 28 H 0.208 0.792 29 H 0.414 0.586 30 H 0.075 0.925 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.061 0.939 34 H 0.000 1.000 35 H 0.251 0.749 36 H 0.017 0.983 37 H 0.055 0.945 38 H 0.065 0.935 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.187 -21.346 -0.882 21.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.212 6.212 3 C 0.193 3.807 4 C -0.332 4.332 5 C 0.048 3.952 6 N -0.334 5.334 7 C 0.230 3.770 8 N -0.321 5.321 9 C 0.079 3.921 10 C -0.172 4.172 11 C 0.056 3.944 12 N -0.333 5.333 13 C -0.396 4.396 14 H 0.084 0.916 15 C -0.244 4.244 16 N -0.580 5.580 17 Si 0.795 3.205 18 H -0.204 1.204 19 H -0.220 1.220 20 H -0.202 1.202 21 C 0.022 3.978 22 C -0.161 4.161 23 N -0.381 5.381 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.146 0.854 27 H 0.191 0.809 28 H 0.224 0.776 29 H 0.251 0.749 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.018 0.982 35 H 0.060 0.940 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -0.590 -20.541 -0.767 20.563 hybrid contribution -0.619 0.395 -0.132 0.746 sum -1.208 -20.145 -0.899 20.201 Atomic orbital electron populations 1.23095 0.75684 1.04913 1.02230 1.86244 1.24523 1.23603 1.86821 1.20143 0.90199 0.83984 0.86417 1.21874 0.91920 1.01893 1.17520 1.23429 1.01458 0.85394 0.84907 1.68092 1.04072 1.35423 1.25807 1.19079 0.86027 0.85015 0.86831 1.44468 1.08295 1.01625 1.77746 1.20650 0.95808 0.79215 0.96388 1.22299 0.98639 0.95768 1.00473 1.20524 0.95837 0.92675 0.85370 1.44344 1.56749 1.17293 1.14964 1.19481 1.40371 0.87952 0.91776 0.91611 1.25768 1.01870 0.99704 0.97017 1.70163 1.48496 1.30557 1.08740 0.85354 0.79072 0.78836 0.77245 1.20422 1.21994 1.20231 1.20950 0.92098 0.88812 0.95987 1.22174 1.00347 0.97097 0.96470 1.67354 1.41966 0.98199 1.30558 0.92639 0.92667 0.85367 0.80894 0.77580 0.74889 0.90735 0.91952 0.90956 0.92060 0.98152 0.94009 0.96525 0.92653 0.91675 0.92848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.56 10.41 113.37 1.18 1.74 16 2 O -0.31 -6.57 10.49 -88.18 -0.93 -7.49 16 3 C 0.38 9.39 7.53 84.85 0.64 10.02 16 4 C -0.31 -6.16 10.12 22.55 0.23 -5.93 16 5 C 0.21 4.49 11.29 84.59 0.95 5.44 16 6 N -0.61 -17.54 9.20 -198.22 -1.82 -19.36 16 7 C 0.59 17.67 8.40 261.51 2.20 19.87 16 8 N -0.69 -20.39 5.22 -330.34 -1.72 -22.12 16 9 C 0.18 6.24 2.41 45.02 0.11 6.35 16 10 C -0.13 -4.84 5.55 30.67 0.17 -4.67 16 11 C 0.18 8.70 5.31 86.36 0.46 9.15 16 12 N -0.61 -30.67 3.00 -699.11 -2.09 -32.76 16 13 C -0.27 -14.62 9.59 84.03 0.81 -13.81 16 14 H 0.07 3.53 7.89 -2.91 -0.02 3.51 16 15 C -0.05 -2.67 4.91 84.86 0.42 -2.25 16 16 N -0.93 -54.86 11.19 21.65 0.24 -54.62 16 17 Si 0.97 44.61 29.59 68.60 2.03 46.64 16 18 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 19 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 20 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 21 C 0.15 6.24 6.51 86.36 0.56 6.81 16 22 C -0.12 -4.26 5.66 30.67 0.17 -4.09 16 23 N -0.64 -17.96 9.40 -310.88 -2.92 -20.88 16 24 H 0.05 0.94 8.11 -2.39 -0.02 0.92 16 25 H 0.05 0.94 8.12 -2.39 -0.02 0.92 16 26 H 0.13 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.17 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.21 2.64 8.06 -2.91 -0.02 2.62 16 29 H 0.41 11.13 8.72 -92.71 -0.81 10.32 16 30 H 0.07 2.76 7.50 -2.39 -0.02 2.74 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.06 3.29 6.04 -2.39 -0.01 3.28 16 34 H 0.00 0.02 8.14 -2.39 -0.02 0.00 16 35 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 36 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.05 2.29 7.94 -2.39 -0.02 2.28 16 38 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 39 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -66.18 322.82 0.92 -65.26 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 0.25 Total: 16.71 kcal Atomic # 6 Polarization: 20.73 SS G_CDS: 7.89 Total: 28.62 kcal Atomic # 7 Polarization: -141.42 SS G_CDS: -8.32 Total: -149.74 kcal Atomic # 8 Polarization: -6.57 SS G_CDS: -0.93 Total: -7.49 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -66.18 0.92 -65.26 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609333758.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.456 kcal (2) G-P(sol) polarization free energy of solvation -66.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds