Wall clock time and date at job start Wed Apr 15 2020 11:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35548 * 117.00354 * 2 1 4 4 C 1.38916 * 120.46653 * 179.97438 * 3 2 1 5 5 C 1.39237 * 118.28607 * 180.02562 * 4 3 2 6 6 N 1.38605 * 120.49898 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99980 * 359.97438 * 6 5 4 8 8 C 1.53045 * 109.46097 * 275.07378 * 7 6 5 9 9 C 1.53192 * 109.31177 * 178.61265 * 8 7 6 10 10 N 1.46925 * 108.77606 * 54.63240 * 9 8 7 11 11 C 1.36940 * 120.62864 * 126.36514 * 10 9 8 12 12 H 1.07994 * 120.00205 * 331.86219 * 11 10 9 13 13 C 1.38816 * 119.99681 * 151.85556 * 11 10 9 14 14 N 1.31620 * 119.99950 * 343.07947 * 13 11 10 15 15 Si 1.86798 * 119.99937 * 163.07673 * 13 11 10 16 16 H 1.48501 * 109.47366 * 59.99949 * 15 13 11 17 17 H 1.48499 * 109.47393 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46996 * 300.00308 * 15 13 11 19 19 C 1.46923 * 118.73911 * 306.39109 * 10 9 8 20 20 C 1.53039 * 109.46251 * 155.00360 * 7 6 5 21 21 N 1.33147 * 119.00773 * 0.02562 * 5 4 3 22 22 C 1.31727 * 120.83552 * 359.97438 * 21 5 4 23 23 N 1.31779 * 121.89085 * 0.02562 * 22 21 5 24 24 H 1.09002 * 109.47171 * 60.00032 * 1 2 3 25 25 H 1.08996 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46857 * 300.00052 * 1 2 3 27 27 H 1.08004 * 120.85885 * 359.74994 * 4 3 2 28 28 H 0.96998 * 120.00748 * 180.02562 * 6 5 4 29 29 H 1.08999 * 109.45877 * 35.02593 * 7 6 5 30 30 H 1.09006 * 109.49457 * 298.56081 * 8 7 6 31 31 H 1.09002 * 109.49974 * 58.65643 * 8 7 6 32 32 H 1.08999 * 109.58515 * 294.84395 * 9 8 7 33 33 H 1.09004 * 109.69984 * 174.48704 * 9 8 7 34 34 H 0.97004 * 119.99829 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.58745 * 293.82174 * 19 10 9 36 36 H 1.09002 * 109.70389 * 173.46796 * 19 10 9 37 37 H 1.09001 * 109.49215 * 301.33306 * 20 7 6 38 38 H 1.08993 * 109.50019 * 61.43337 * 20 7 6 39 39 H 1.08001 * 119.05933 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4311 1.2916 0.0005 5 6 4.0156 2.5553 0.0011 6 7 5.3949 2.6924 0.0021 7 6 6.2493 1.5023 0.0033 8 6 6.4418 1.0143 1.4410 9 6 7.3069 -0.2500 1.4353 10 7 8.5593 0.0372 0.7227 11 6 9.7701 -0.2105 1.3124 12 1 9.8642 -0.1759 2.3876 13 6 10.8765 -0.5062 0.5279 14 7 10.7151 -0.8756 -0.7250 15 14 12.5944 -0.3799 1.2505 16 1 12.7153 -1.3061 2.4050 17 1 13.5949 -0.7448 0.2156 18 1 12.8389 1.0125 1.7054 19 6 8.4878 0.5958 -0.6344 20 6 7.6095 1.8506 -0.6054 21 7 3.2298 3.6302 0.0016 22 6 1.9182 3.5078 0.0010 23 7 1.3291 2.3290 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.0400 0.3996 0.0050 28 1 5.7945 3.5763 0.0029 29 1 5.7778 0.7163 -0.5866 30 1 6.9357 1.7905 2.0256 31 1 5.4707 0.7887 1.8818 32 1 6.7744 -1.0548 0.9285 33 1 7.5295 -0.5475 2.4600 34 1 11.4883 -1.0819 -1.2733 35 1 8.0516 -0.1401 -1.3099 36 1 9.4887 0.8582 -0.9770 37 1 7.4695 2.2201 -1.6213 38 1 8.0924 2.6188 -0.0017 39 1 1.3082 4.3990 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000613877988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:59 Heat of formation + Delta-G solvation = 36.080914 kcal Electronic energy + Delta-G solvation = -21601.875235 eV Core-core repulsion = 18352.688319 eV Total energy + Delta-G solvation = -3249.186916 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.04978 -38.76787 -37.96602 -35.47396 -32.97748 -31.94265 -31.03176 -29.97644 -29.19870 -27.34146 -25.23642 -24.15982 -22.97838 -22.20153 -21.55265 -19.52918 -18.63544 -18.04392 -16.81520 -16.18266 -15.79968 -15.45435 -15.25453 -14.83028 -14.47207 -14.33778 -13.99642 -13.79458 -13.64287 -13.18318 -12.94360 -12.41519 -12.14151 -11.85758 -11.57783 -11.23464 -11.17230 -10.93488 -10.76101 -10.53807 -10.42255 -10.27917 -10.02984 -9.77342 -9.68052 -9.34385 -9.19011 -8.53593 -8.00557 -6.75969 -5.85378 -3.28063 1.17317 1.47931 2.81535 3.24082 3.35774 3.41532 3.42636 3.95652 4.15746 4.44985 4.59503 5.03337 5.11350 5.15233 5.15495 5.30504 5.38970 5.40043 5.44367 5.46677 5.59615 5.74562 5.91805 6.02476 6.16538 6.32579 6.39186 6.41812 6.50571 6.68555 6.76206 6.87599 7.14116 7.22867 7.33994 7.54324 7.67475 7.74478 8.30110 8.38467 9.14558 9.77392 10.33553 11.23599 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.003674 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.449512 B = 7620.166601 C = 8008.681493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.303 6.303 3 C 0.383 3.617 4 C -0.315 4.315 5 C 0.465 3.535 6 N -0.697 5.697 7 C 0.154 3.846 8 C -0.145 4.145 9 C 0.147 3.853 10 N -0.592 5.592 11 C -0.256 4.256 12 H 0.066 0.934 13 C 0.004 3.996 14 N -0.903 5.903 15 Si 0.903 3.097 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.284 1.284 19 C 0.175 3.825 20 C -0.146 4.146 21 N -0.601 5.601 22 C 0.369 3.631 23 N -0.622 5.622 24 H 0.059 0.941 25 H 0.096 0.904 26 H 0.059 0.941 27 H 0.149 0.851 28 H 0.406 0.594 29 H 0.079 0.921 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.020 0.980 33 H 0.058 0.942 34 H 0.255 0.745 35 H 0.022 0.978 36 H 0.093 0.907 37 H 0.057 0.943 38 H 0.062 0.938 39 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.708 5.781 0.237 17.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.207 6.207 3 C 0.201 3.799 4 C -0.344 4.344 5 C 0.222 3.778 6 N -0.325 5.325 7 C 0.050 3.950 8 C -0.186 4.186 9 C 0.020 3.980 10 N -0.314 5.314 11 C -0.386 4.386 12 H 0.084 0.916 13 C -0.195 4.195 14 N -0.547 5.547 15 Si 0.733 3.267 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.210 1.210 19 C 0.048 3.952 20 C -0.186 4.186 21 N -0.330 5.330 22 C 0.079 3.921 23 N -0.358 5.358 24 H 0.078 0.922 25 H 0.114 0.886 26 H 0.078 0.922 27 H 0.166 0.834 28 H 0.242 0.758 29 H 0.097 0.903 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.077 0.923 34 H 0.065 0.935 35 H 0.040 0.960 36 H 0.111 0.889 37 H 0.075 0.925 38 H 0.081 0.919 39 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -16.847 5.951 0.114 17.867 hybrid contribution 1.236 -0.205 0.314 1.292 sum -15.610 5.746 0.428 16.640 Atomic orbital electron populations 1.22879 0.77085 1.02946 1.02541 1.86241 1.23013 1.24477 1.87009 1.19653 0.88839 0.84660 0.86760 1.21047 0.92962 0.99136 1.21233 1.18270 0.86190 0.88129 0.85199 1.45083 1.00702 1.10550 1.76193 1.21238 0.90562 0.85721 0.97482 1.22510 0.99772 1.00720 0.95571 1.20880 0.87669 0.92560 0.96888 1.44072 1.00730 1.72178 1.14455 1.19148 0.85701 1.42146 0.91569 0.91638 1.25052 0.98787 0.99035 0.96591 1.70007 1.29302 1.47761 1.07616 0.86357 0.84132 0.78080 0.78123 1.20833 1.21597 1.21002 1.20754 0.98906 0.89230 0.86312 1.22546 0.94286 1.02501 0.99280 1.68002 1.06583 1.32340 1.26076 1.24256 0.87242 0.93747 0.86847 1.68060 1.41370 0.98938 1.27384 0.92199 0.88606 0.92194 0.83363 0.75780 0.90277 0.91814 0.92759 0.96177 0.92349 0.93476 0.96000 0.88875 0.92463 0.91882 0.78841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.41 101.05 1.05 1.43 16 2 O -0.30 -3.99 10.49 -18.34 -0.19 -4.18 16 3 C 0.38 5.48 7.52 -16.79 -0.13 5.36 16 4 C -0.31 -4.68 8.87 -38.96 -0.35 -5.02 16 5 C 0.46 6.88 7.68 -154.73 -1.19 5.69 16 6 N -0.70 -9.96 5.23 -53.79 -0.28 -10.24 16 7 C 0.15 2.44 2.11 -67.89 -0.14 2.30 16 8 C -0.15 -2.44 5.61 -26.61 -0.15 -2.58 16 9 C 0.15 2.95 6.52 -3.71 -0.02 2.93 16 10 N -0.59 -14.17 2.99 -172.32 -0.52 -14.68 16 11 C -0.26 -6.82 9.58 -15.06 -0.14 -6.96 16 12 H 0.07 1.72 7.88 -52.49 -0.41 1.30 16 13 C 0.00 0.11 4.92 -17.43 -0.09 0.03 16 14 N -0.90 -25.43 11.19 55.49 0.62 -24.81 16 15 Si 0.90 21.19 29.59 -169.99 -5.03 16.16 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 19 C 0.17 3.92 5.30 -3.71 -0.02 3.90 16 20 C -0.15 -2.56 5.55 -26.61 -0.15 -2.71 16 21 N -0.60 -8.47 10.47 -13.87 -0.15 -8.61 16 22 C 0.37 4.52 12.28 -92.23 -1.13 3.39 16 23 N -0.62 -8.27 9.38 -14.72 -0.14 -8.40 16 24 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 25 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 27 H 0.15 2.21 6.31 -52.48 -0.33 1.88 16 28 H 0.41 5.41 8.73 -40.82 -0.36 5.06 16 29 H 0.08 1.29 6.51 -51.93 -0.34 0.96 16 30 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.05 0.85 7.77 -51.93 -0.40 0.44 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 34 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 35 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 2.36 6.06 -51.93 -0.31 2.04 16 37 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.20 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 319.67 15.07 4.82 4.82 Total: -1.00 -29.59 319.67 -8.83 -38.41 By element: Atomic # 1 Polarization: 9.32 SS G_CDS: -5.51 Total: 3.81 kcal Atomic # 6 Polarization: 10.19 SS G_CDS: -2.46 Total: 7.73 kcal Atomic # 7 Polarization: -66.30 SS G_CDS: -0.46 Total: -66.75 kcal Atomic # 8 Polarization: -3.99 SS G_CDS: -0.19 Total: -4.18 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.03 Total: 16.16 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.59 -8.83 -38.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613877988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.495 kcal (2) G-P(sol) polarization free energy of solvation -29.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds