Wall clock time and date at job start Wed Apr 15 2020 11:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35548 * 117.00354 * 2 1 4 4 C 1.38916 * 120.46653 * 179.97438 * 3 2 1 5 5 C 1.39237 * 118.28607 * 180.02562 * 4 3 2 6 6 N 1.38605 * 120.49898 * 179.97438 * 5 4 3 7 7 C 1.46504 * 119.99980 * 359.97438 * 6 5 4 8 8 C 1.53045 * 109.46097 * 275.07378 * 7 6 5 9 9 C 1.53192 * 109.31177 * 178.61265 * 8 7 6 10 10 N 1.46925 * 108.77606 * 54.63240 * 9 8 7 11 11 C 1.36940 * 120.62864 * 126.36514 * 10 9 8 12 12 H 1.07994 * 120.00205 * 331.86219 * 11 10 9 13 13 C 1.38816 * 119.99681 * 151.85556 * 11 10 9 14 14 N 1.31620 * 119.99950 * 343.07947 * 13 11 10 15 15 Si 1.86798 * 119.99937 * 163.07673 * 13 11 10 16 16 H 1.48501 * 109.47366 * 59.99949 * 15 13 11 17 17 H 1.48499 * 109.47393 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.46996 * 300.00308 * 15 13 11 19 19 C 1.46923 * 118.73911 * 306.39109 * 10 9 8 20 20 C 1.53039 * 109.46251 * 155.00360 * 7 6 5 21 21 N 1.33147 * 119.00773 * 0.02562 * 5 4 3 22 22 C 1.31727 * 120.83552 * 359.97438 * 21 5 4 23 23 N 1.31779 * 121.89085 * 0.02562 * 22 21 5 24 24 H 1.09002 * 109.47171 * 60.00032 * 1 2 3 25 25 H 1.08996 * 109.47340 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46857 * 300.00052 * 1 2 3 27 27 H 1.08004 * 120.85885 * 359.74994 * 4 3 2 28 28 H 0.96998 * 120.00748 * 180.02562 * 6 5 4 29 29 H 1.08999 * 109.45877 * 35.02593 * 7 6 5 30 30 H 1.09006 * 109.49457 * 298.56081 * 8 7 6 31 31 H 1.09002 * 109.49974 * 58.65643 * 8 7 6 32 32 H 1.08999 * 109.58515 * 294.84395 * 9 8 7 33 33 H 1.09004 * 109.69984 * 174.48704 * 9 8 7 34 34 H 0.97004 * 119.99829 * 179.97438 * 14 13 11 35 35 H 1.09001 * 109.58745 * 293.82174 * 19 10 9 36 36 H 1.09002 * 109.70389 * 173.46796 * 19 10 9 37 37 H 1.09001 * 109.49215 * 301.33306 * 20 7 6 38 38 H 1.08993 * 109.50019 * 61.43337 * 20 7 6 39 39 H 1.08001 * 119.05933 * 179.97438 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 6 3.4311 1.2916 0.0005 5 6 4.0156 2.5553 0.0011 6 7 5.3949 2.6924 0.0021 7 6 6.2493 1.5023 0.0033 8 6 6.4418 1.0143 1.4410 9 6 7.3069 -0.2500 1.4353 10 7 8.5593 0.0372 0.7227 11 6 9.7701 -0.2105 1.3124 12 1 9.8642 -0.1759 2.3876 13 6 10.8765 -0.5062 0.5279 14 7 10.7151 -0.8756 -0.7250 15 14 12.5944 -0.3799 1.2505 16 1 12.7153 -1.3061 2.4050 17 1 13.5949 -0.7448 0.2156 18 1 12.8389 1.0125 1.7054 19 6 8.4878 0.5958 -0.6344 20 6 7.6095 1.8506 -0.6054 21 7 3.2298 3.6302 0.0016 22 6 1.9182 3.5078 0.0010 23 7 1.3291 2.3290 0.0005 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 4.0400 0.3996 0.0050 28 1 5.7945 3.5763 0.0029 29 1 5.7778 0.7163 -0.5866 30 1 6.9357 1.7905 2.0256 31 1 5.4707 0.7887 1.8818 32 1 6.7744 -1.0548 0.9285 33 1 7.5295 -0.5475 2.4600 34 1 11.4883 -1.0819 -1.2733 35 1 8.0516 -0.1401 -1.3099 36 1 9.4887 0.8582 -0.9770 37 1 7.4695 2.2201 -1.6213 38 1 8.0924 2.6188 -0.0017 39 1 1.3082 4.3990 0.0019 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000613877988.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:59 Heat of formation + Delta-G solvation = 16.983973 kcal Electronic energy + Delta-G solvation = -21602.703341 eV Core-core repulsion = 18352.688319 eV Total energy + Delta-G solvation = -3250.015021 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.08688 -39.95840 -39.21452 -36.92023 -34.50962 -33.25331 -32.38724 -31.49913 -30.69534 -28.18796 -26.93520 -25.32825 -24.30439 -23.72536 -22.95902 -21.04597 -19.71605 -19.23041 -18.56745 -17.13222 -17.05626 -16.76603 -16.47294 -16.31210 -15.64956 -15.54147 -15.36942 -15.22818 -14.88873 -14.77255 -14.49755 -14.01284 -13.25960 -13.00661 -12.89826 -12.83764 -12.60115 -12.55975 -12.34420 -12.08259 -12.01168 -11.80251 -11.54802 -11.34779 -11.30561 -10.54099 -10.38965 -10.22736 -9.15999 -8.70565 -7.88472 -5.33419 0.14840 0.39653 1.48611 1.50489 1.57219 1.80541 2.16837 2.51845 2.91741 3.24677 3.28210 3.57262 3.66892 3.83646 3.98792 3.99678 4.21139 4.34896 4.43856 4.45499 4.49957 4.59026 4.63734 4.74986 4.79851 4.83972 4.92874 5.04039 5.13625 5.18532 5.31112 5.47089 5.60821 5.64491 5.71159 6.14487 6.24841 6.39086 6.58860 7.14739 7.26908 7.84726 8.35977 9.18282 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.034755 B = 0.003674 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.449512 B = 7620.166601 C = 8008.681493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.378 3.622 4 C -0.332 4.332 5 C 0.459 3.541 6 N -0.691 5.691 7 C 0.168 3.832 8 C -0.129 4.129 9 C 0.144 3.856 10 N -0.609 5.609 11 C -0.266 4.266 12 H 0.066 0.934 13 C -0.046 4.046 14 N -0.933 5.933 15 Si 0.965 3.035 16 H -0.277 1.277 17 H -0.294 1.294 18 H -0.278 1.278 19 C 0.180 3.820 20 C -0.130 4.130 21 N -0.611 5.611 22 C 0.371 3.629 23 N -0.623 5.623 24 H 0.062 0.938 25 H 0.122 0.878 26 H 0.062 0.938 27 H 0.143 0.857 28 H 0.412 0.588 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.070 0.930 32 H 0.019 0.981 33 H 0.057 0.943 34 H 0.251 0.749 35 H 0.002 0.998 36 H 0.060 0.940 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.283 6.945 0.846 19.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.221 6.221 3 C 0.195 3.805 4 C -0.361 4.361 5 C 0.217 3.783 6 N -0.321 5.321 7 C 0.064 3.936 8 C -0.170 4.170 9 C 0.018 3.982 10 N -0.333 5.333 11 C -0.396 4.396 12 H 0.084 0.916 13 C -0.242 4.242 14 N -0.579 5.579 15 Si 0.794 3.206 16 H -0.203 1.203 17 H -0.220 1.220 18 H -0.204 1.204 19 C 0.054 3.946 20 C -0.170 4.170 21 N -0.340 5.340 22 C 0.081 3.919 23 N -0.358 5.358 24 H 0.081 0.919 25 H 0.140 0.860 26 H 0.081 0.919 27 H 0.160 0.840 28 H 0.250 0.750 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.075 0.925 34 H 0.060 0.940 35 H 0.020 0.980 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.082 0.918 39 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -18.471 7.132 0.740 19.814 hybrid contribution 1.573 -0.603 0.134 1.690 sum -16.898 6.529 0.874 18.137 Atomic orbital electron populations 1.23151 0.75080 1.04863 1.02781 1.86229 1.25060 1.24165 1.86677 1.19825 0.88931 0.85349 0.86378 1.21083 0.93482 0.99042 1.22477 1.18339 0.86194 0.88448 0.85365 1.44762 1.00586 1.10093 1.76652 1.20885 0.89866 0.86293 0.96590 1.22298 0.99601 0.98768 0.96301 1.20993 0.86704 0.94236 0.96258 1.44321 1.01282 1.72736 1.14955 1.19469 0.87048 1.41305 0.91828 0.91631 1.25759 1.02067 0.99351 0.97017 1.70157 1.29759 1.49180 1.08764 0.85377 0.79872 0.78135 0.77258 1.20267 1.22047 1.20423 1.20545 0.97999 0.90708 0.85382 1.22265 0.94247 0.99792 1.00700 1.68067 1.07324 1.31968 1.26593 1.25103 0.87029 0.94664 0.85064 1.68166 1.41216 0.98999 1.27428 0.91921 0.85967 0.91905 0.83958 0.75032 0.90563 0.92143 0.91171 0.96330 0.92489 0.94016 0.97966 0.92114 0.90620 0.91768 0.74962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 10.41 113.37 1.18 1.76 16 2 O -0.32 -7.89 10.49 -88.54 -0.93 -8.81 16 3 C 0.38 10.24 7.52 84.68 0.64 10.88 16 4 C -0.33 -9.45 8.87 22.67 0.20 -9.25 16 5 C 0.46 12.77 7.68 133.00 1.02 13.79 16 6 N -0.69 -18.55 5.23 -324.09 -1.69 -20.24 16 7 C 0.17 5.15 2.11 45.02 0.10 5.25 16 8 C -0.13 -4.19 5.61 30.67 0.17 -4.01 16 9 C 0.14 5.76 6.52 86.36 0.56 6.32 16 10 N -0.61 -29.53 2.99 -699.10 -2.09 -31.62 16 11 C -0.27 -14.33 9.58 84.03 0.81 -13.52 16 12 H 0.07 3.45 7.88 -2.91 -0.02 3.42 16 13 C -0.05 -2.52 4.92 84.86 0.42 -2.11 16 14 N -0.93 -53.90 11.19 21.65 0.24 -53.66 16 15 Si 0.97 44.01 29.59 68.60 2.03 46.04 16 16 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 17 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 18 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 19 C 0.18 8.24 5.30 86.36 0.46 8.69 16 20 C -0.13 -4.47 5.55 30.67 0.17 -4.30 16 21 N -0.61 -15.75 10.47 -197.79 -2.07 -17.82 16 22 C 0.37 8.02 12.28 180.91 2.22 10.25 16 23 N -0.62 -15.13 9.38 -313.04 -2.94 -18.06 16 24 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 25 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 27 H 0.14 4.14 6.31 -2.91 -0.02 4.12 16 28 H 0.41 10.13 8.73 -92.71 -0.81 9.32 16 29 H 0.08 2.43 6.51 -2.39 -0.02 2.41 16 30 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.07 2.07 7.77 -2.39 -0.02 2.05 16 32 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 34 H 0.25 14.10 8.31 -92.70 -0.77 13.32 16 35 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 36 H 0.06 3.17 6.06 -2.39 -0.01 3.16 16 37 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.23 2.92 8.06 -2.91 -0.02 2.89 16 Total: -1.00 -63.64 319.67 0.75 -62.90 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.25 Total: 17.53 kcal Atomic # 6 Polarization: 15.81 SS G_CDS: 7.94 Total: 23.75 kcal Atomic # 7 Polarization: -132.85 SS G_CDS: -8.55 Total: -141.40 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: -0.93 Total: -8.81 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -63.64 0.75 -62.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000613877988.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.882 kcal (2) G-P(sol) polarization free energy of solvation -63.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds