Wall clock time and date at job start Wed Apr 15 2020 11:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.36936 * 120.00443 * 2 1 4 4 H 1.07997 * 120.00040 * 146.75346 * 3 2 1 5 5 C 1.38810 * 119.99777 * 326.75617 * 3 2 1 6 6 N 1.31619 * 120.00062 * 154.28637 * 5 3 2 7 7 Si 1.86801 * 119.99911 * 334.28130 * 5 3 2 8 8 H 1.48500 * 109.47307 * 95.39565 * 7 5 3 9 9 H 1.48500 * 109.47318 * 215.39723 * 7 5 3 10 10 H 1.48498 * 109.47318 * 335.39433 * 7 5 3 11 11 C 1.46507 * 119.99704 * 179.97438 * 2 1 3 12 12 H 1.08994 * 110.63831 * 178.31282 * 11 2 1 13 13 C 1.55156 * 110.72134 * 301.45710 * 11 2 1 14 14 C 1.54903 * 101.58387 * 154.04088 * 13 11 2 15 15 N 1.47426 * 104.83433 * 322.99021 * 14 13 11 16 16 C 1.34768 * 125.64973 * 204.09165 * 15 14 13 17 17 O 1.21284 * 120.00023 * 180.02562 * 16 15 14 18 18 C 1.50701 * 120.00200 * 0.02562 * 16 15 14 19 19 N 1.46497 * 109.47198 * 179.97438 * 18 16 15 20 20 C 1.34948 * 126.03881 * 125.26502 * 19 18 16 21 21 C 1.35311 * 107.75037 * 180.14992 * 20 19 18 22 22 C 1.39872 * 107.91667 * 359.60336 * 21 20 19 23 23 N 1.30832 * 108.20662 * 0.24915 * 22 21 20 24 24 C 1.47025 * 108.69892 * 24.35362 * 15 14 13 25 25 H 1.09002 * 109.47107 * 274.78067 * 1 2 3 26 26 H 1.09004 * 109.47338 * 34.77613 * 1 2 3 27 27 H 1.09004 * 109.47760 * 154.78000 * 1 2 3 28 28 H 0.96998 * 119.99545 * 179.97438 * 6 5 3 29 29 H 1.08999 * 111.00678 * 35.96211 * 13 11 2 30 30 H 1.09001 * 111.03437 * 272.13169 * 13 11 2 31 31 H 1.08997 * 110.36992 * 204.14611 * 14 13 11 32 32 H 1.09004 * 110.45701 * 81.87230 * 14 13 11 33 33 H 1.09003 * 109.46622 * 60.00299 * 18 16 15 34 34 H 1.08992 * 109.46958 * 300.00276 * 18 16 15 35 35 H 1.08003 * 126.12699 * 359.97438 * 20 19 18 36 36 H 1.08001 * 126.04582 * 179.87417 * 21 20 19 37 37 H 1.08009 * 125.89778 * 180.22046 * 22 21 20 38 38 H 1.09006 * 109.88342 * 118.13199 * 24 15 14 39 39 H 1.09000 * 109.88342 * 239.29264 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1858 0.0000 4 1 3.0971 1.2623 0.5128 5 6 1.6261 2.2896 -0.6590 6 7 1.9597 3.5040 -0.2764 7 14 0.4481 2.0515 -2.0891 8 1 -0.9507 2.1361 -1.5976 9 1 0.6810 3.1103 -3.1039 10 1 0.6774 0.7188 -2.7027 11 6 2.1974 -1.2688 0.0006 12 1 3.2725 -1.0918 -0.0295 13 6 1.8160 -2.1223 1.2389 14 6 2.1050 -3.5563 0.7292 15 7 1.6991 -3.5422 -0.6880 16 6 1.3357 -4.6194 -1.4117 17 8 1.0198 -4.4896 -2.5755 18 6 1.3217 -5.9852 -0.7750 19 7 0.8939 -6.9798 -1.7619 20 6 1.5690 -8.0956 -2.1086 21 6 0.8426 -8.7416 -3.0498 22 6 -0.3206 -7.9997 -3.2798 23 7 -0.2909 -6.9433 -2.5085 24 6 1.7624 -2.1591 -1.1827 25 1 -0.3633 0.0856 1.0241 26 1 -0.3634 0.8441 -0.5862 27 1 -0.3635 -0.9297 -0.4379 28 1 1.5940 4.2752 -0.7372 29 1 0.7617 -2.0010 1.4873 30 1 2.4472 -1.8766 2.0929 31 1 1.5137 -4.2832 1.2860 32 1 3.1671 -3.7851 0.8173 33 1 0.6283 -5.9869 0.0660 34 1 2.3228 -6.2313 -0.4211 35 1 2.5203 -8.4144 -1.7087 36 1 1.1110 -9.6688 -3.5343 37 1 -1.1073 -8.2545 -3.9746 38 1 2.4908 -2.0873 -1.9905 39 1 0.7802 -1.8470 -1.5376 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971077121.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:12 Heat of formation + Delta-G solvation = 68.496604 kcal Electronic energy + Delta-G solvation = -21656.812029 eV Core-core repulsion = 18409.030763 eV Total energy + Delta-G solvation = -3247.781266 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.10818 -40.99009 -39.01443 -36.68281 -34.37798 -33.77933 -31.76154 -30.97207 -29.94966 -28.35426 -27.99489 -25.35735 -23.82230 -22.24981 -21.94158 -20.96628 -20.29517 -19.07606 -18.41336 -18.05403 -17.77320 -17.07029 -16.60637 -16.00422 -15.47499 -15.37223 -14.91443 -14.74807 -14.59160 -14.45131 -14.33960 -14.03835 -13.65514 -13.61506 -13.41077 -13.24486 -13.09301 -12.63909 -12.42165 -12.39855 -12.09905 -11.63384 -11.54351 -11.51493 -11.21091 -10.65812 -10.32742 -9.73009 -9.49767 -8.91435 -8.28019 -5.59372 0.95957 1.22668 1.36064 1.44748 1.46738 1.49921 1.98094 2.02026 2.34374 2.96360 3.25213 3.34014 3.72726 3.76570 3.94556 4.07228 4.12246 4.20685 4.24926 4.28999 4.42920 4.45025 4.64494 4.69025 4.72489 4.86470 4.92260 4.93167 4.96157 5.14781 5.17302 5.26270 5.37263 5.74172 5.85250 6.11536 6.13007 6.46591 6.81469 6.87552 7.03592 7.55185 7.96474 8.91643 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.032441 B = 0.003948 C = 0.003664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 862.885390 B = 7090.635194 C = 7640.811915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.110 3.890 2 N -0.608 5.608 3 C -0.258 4.258 4 H 0.061 0.939 5 C -0.012 4.012 6 N -0.938 5.938 7 Si 0.932 3.068 8 H -0.276 1.276 9 H -0.308 1.308 10 H -0.276 1.276 11 C 0.163 3.837 12 H 0.086 0.914 13 C -0.139 4.139 14 C 0.101 3.899 15 N -0.611 5.611 16 C 0.503 3.497 17 O -0.578 6.578 18 C 0.126 3.874 19 N -0.377 5.377 20 C 0.057 3.943 21 C -0.285 4.285 22 C 0.025 3.975 23 N -0.331 5.331 24 C 0.094 3.906 25 H 0.035 0.965 26 H 0.019 0.981 27 H 0.053 0.947 28 H 0.264 0.736 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.104 0.896 33 H 0.137 0.863 34 H 0.175 0.825 35 H 0.219 0.781 36 H 0.172 0.828 37 H 0.196 0.804 38 H 0.045 0.955 39 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.315 -26.390 3.810 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.331 5.331 3 C -0.387 4.387 4 H 0.079 0.921 5 C -0.210 4.210 6 N -0.582 5.582 7 Si 0.763 3.237 8 H -0.204 1.204 9 H -0.237 1.237 10 H -0.202 1.202 11 C 0.055 3.945 12 H 0.104 0.896 13 C -0.179 4.179 14 C -0.020 4.020 15 N -0.345 5.345 16 C 0.291 3.709 17 O -0.457 6.457 18 C 0.002 3.998 19 N -0.160 5.160 20 C -0.087 4.087 21 C -0.314 4.314 22 C -0.162 4.162 23 N -0.152 5.152 24 C -0.032 4.032 25 H 0.053 0.947 26 H 0.037 0.963 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.132 0.868 32 H 0.122 0.878 33 H 0.155 0.845 34 H 0.193 0.807 35 H 0.235 0.765 36 H 0.189 0.811 37 H 0.213 0.787 38 H 0.064 0.936 39 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 0.547 -25.041 3.605 25.305 hybrid contribution -0.357 0.262 -1.587 1.648 sum 0.190 -24.779 2.018 24.862 Atomic orbital electron populations 1.21306 0.83988 0.98763 0.99296 1.44169 1.01193 1.01735 1.86018 1.18779 1.05898 0.87041 1.27021 0.92094 1.25844 1.00340 0.95014 0.99777 1.69985 1.48485 0.98326 1.41368 0.86089 0.79410 0.76649 0.81554 1.20356 1.23654 1.20178 1.21675 0.96455 0.83981 0.92340 0.89596 1.23201 1.02760 0.93630 0.98281 1.22726 1.02587 0.98236 0.78485 1.48573 1.65973 1.05979 1.13995 1.21104 0.76819 0.86794 0.86166 1.90771 1.49439 1.86316 1.19194 1.21754 1.06401 0.82370 0.89290 1.48355 1.15986 1.18688 1.32947 1.23318 0.99975 0.87366 0.98089 1.21897 0.97353 1.06014 1.06123 1.24406 1.00372 0.92300 0.99087 1.77449 1.04281 1.22752 1.10739 1.22465 0.99949 0.81967 0.98826 0.94651 0.96328 0.92882 0.92669 0.91296 0.88127 0.86810 0.87808 0.84523 0.80733 0.76484 0.81070 0.78695 0.93640 0.94360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 4.70 8.42 127.77 1.08 5.78 16 2 N -0.61 -27.43 2.56 -696.13 -1.79 -29.22 16 3 C -0.26 -14.08 9.87 84.03 0.83 -13.25 16 4 H 0.06 3.55 8.06 -2.91 -0.02 3.53 16 5 C -0.01 -0.71 5.29 84.86 0.45 -0.26 16 6 N -0.94 -57.66 13.97 21.65 0.30 -57.36 16 7 Si 0.93 47.60 25.09 68.60 1.72 49.32 16 8 H -0.28 -13.50 6.64 99.48 0.66 -12.84 16 9 H -0.31 -15.90 7.11 99.48 0.71 -15.19 16 10 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 11 C 0.16 5.69 3.42 46.18 0.16 5.85 16 12 H 0.09 3.02 7.95 -2.39 -0.02 3.00 16 13 C -0.14 -3.33 6.65 31.98 0.21 -3.12 16 14 C 0.10 1.61 6.69 86.85 0.58 2.19 16 15 N -0.61 -16.09 3.33 -811.77 -2.70 -18.79 16 16 C 0.50 14.26 7.88 87.66 0.69 14.95 16 17 O -0.58 -23.71 16.04 -3.04 -0.05 -23.76 16 18 C 0.13 2.05 6.00 85.63 0.51 2.56 16 19 N -0.38 -8.48 3.40 -351.81 -1.20 -9.68 16 20 C 0.06 0.91 11.45 83.54 0.96 1.87 16 21 C -0.28 -5.06 10.80 21.99 0.24 -4.83 16 22 C 0.02 0.58 12.02 85.24 1.02 1.60 16 23 N -0.33 -9.96 11.64 -57.02 -0.66 -10.63 16 24 C 0.09 3.33 6.41 86.73 0.56 3.89 16 25 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.02 0.88 2.78 -2.38 -0.01 0.87 16 27 H 0.05 2.05 6.29 -2.39 -0.02 2.03 16 28 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 29 H 0.07 1.78 7.28 -2.39 -0.02 1.76 16 30 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 31 H 0.11 0.97 7.48 -2.39 -0.02 0.95 16 32 H 0.10 1.11 8.14 -2.38 -0.02 1.09 16 33 H 0.14 1.57 7.85 -2.39 -0.02 1.55 16 34 H 0.18 0.95 8.07 -2.39 -0.02 0.94 16 35 H 0.22 1.19 8.06 -2.91 -0.02 1.17 16 36 H 0.17 1.98 8.06 -2.91 -0.02 1.96 16 37 H 0.20 3.48 8.06 -2.91 -0.02 3.46 16 38 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 39 H 0.04 1.60 6.14 -2.39 -0.01 1.59 16 Total: -1.00 -84.52 318.74 3.92 -80.60 By element: Atomic # 1 Polarization: 1.28 SS G_CDS: 1.00 Total: 2.28 kcal Atomic # 6 Polarization: 9.94 SS G_CDS: 7.29 Total: 17.23 kcal Atomic # 7 Polarization: -119.64 SS G_CDS: -6.04 Total: -125.68 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: -0.05 Total: -23.76 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 1.72 Total: 49.32 kcal Total: -84.52 3.92 -80.60 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971077121.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.098 kcal (2) G-P(sol) polarization free energy of solvation -84.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds