Wall clock time and date at job start Wed Apr 15 2020 11:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99464 * 2 1 4 4 H 1.07997 * 119.99970 * 201.72122 * 3 2 1 5 5 C 1.38810 * 120.00253 * 21.73266 * 3 2 1 6 6 N 1.31622 * 119.99725 * 13.64409 * 5 3 2 7 7 Si 1.86798 * 119.99998 * 193.64891 * 5 3 2 8 8 H 1.48501 * 109.47204 * 90.00164 * 7 5 3 9 9 H 1.48511 * 109.46731 * 209.99535 * 7 5 3 10 10 H 1.48494 * 109.47129 * 329.99426 * 7 5 3 11 11 C 1.46499 * 120.00119 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.63995 * 176.85505 * 11 2 1 13 13 C 1.55152 * 110.87404 * 53.60317 * 11 2 1 14 14 C 1.55129 * 101.48533 * 205.89607 * 13 11 2 15 15 N 1.47421 * 104.72143 * 37.29723 * 14 13 11 16 16 C 1.34779 * 125.65006 * 155.81552 * 15 14 13 17 17 O 1.21280 * 120.00321 * 179.69428 * 16 15 14 18 18 C 1.50698 * 119.99691 * 359.69187 * 16 15 14 19 19 C 1.50700 * 109.46925 * 180.02562 * 18 16 15 20 20 C 1.39878 * 125.89923 * 125.02563 * 19 18 16 21 21 C 1.35319 * 107.91644 * 179.97438 * 20 19 18 22 22 N 1.34946 * 107.74831 * 0.02562 * 21 20 19 23 23 H 0.96999 * 126.03457 * 179.97438 * 22 21 20 24 24 N 1.30839 * 125.90131 * 305.02190 * 19 18 16 25 25 C 1.47023 * 108.70272 * 335.55561 * 15 14 13 26 26 H 1.08999 * 109.46689 * 274.45005 * 1 2 3 27 27 H 1.08990 * 109.47651 * 34.45303 * 1 2 3 28 28 H 1.09008 * 109.47008 * 154.45831 * 1 2 3 29 29 H 0.97002 * 119.99861 * 180.02562 * 6 5 3 30 30 H 1.08994 * 111.00949 * 324.14202 * 13 11 2 31 31 H 1.09007 * 111.00363 * 87.95375 * 13 11 2 32 32 H 1.09000 * 110.50023 * 278.45762 * 14 13 11 33 33 H 1.09002 * 110.34134 * 156.05849 * 14 13 11 34 34 H 1.09001 * 109.47506 * 59.99952 * 18 16 15 35 35 H 1.09005 * 109.47351 * 300.00095 * 18 16 15 36 36 H 1.07991 * 126.04164 * 359.97438 * 20 19 18 37 37 H 1.08001 * 126.12283 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.88292 * 120.70559 * 25 15 14 39 39 H 1.09008 * 109.87972 * 241.86754 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1721 1.2193 -0.3461 5 6 1.5295 2.3454 0.4451 6 7 0.3965 2.2716 1.1110 7 14 2.3028 4.0101 0.0989 8 1 1.7955 4.5321 -1.1954 9 1 1.9484 4.9564 1.1873 10 1 3.7791 3.8654 0.0300 11 6 2.1976 -1.2687 -0.0006 12 1 3.2718 -1.0921 -0.0565 13 6 1.7290 -2.1771 -1.1679 14 6 2.0623 -3.5875 -0.6146 15 7 1.7546 -3.5076 0.8249 16 6 1.4465 -4.5503 1.6214 17 8 1.2158 -4.3673 2.7979 18 6 1.3887 -5.9435 1.0501 19 6 1.0252 -6.9187 2.1400 20 6 -0.0431 -7.8211 2.1104 21 6 -0.0322 -8.5173 3.2707 22 7 1.0058 -8.0710 4.0086 23 1 1.2580 -8.3888 4.8896 24 7 1.6545 -7.0676 3.2774 25 6 1.8456 -2.1028 1.2492 26 1 -0.3633 0.0797 1.0246 27 1 -0.3634 0.8473 -0.5813 28 1 -0.3633 -0.9273 -0.4431 29 1 -0.0370 3.0818 1.4217 30 1 0.6593 -2.0657 -1.3446 31 1 2.2963 -1.9706 -2.0755 32 1 3.1172 -3.8170 -0.7648 33 1 1.4372 -4.3403 -1.0949 34 1 2.3619 -6.2071 0.6359 35 1 0.6361 -5.9824 0.2625 36 1 -0.7514 -7.9409 1.3041 37 1 -0.7298 -9.2910 3.5556 38 1 0.8888 -1.7757 1.6559 39 1 2.6275 -1.9925 2.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971246517.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:22 Heat of formation + Delta-G solvation = 74.708504 kcal Electronic energy + Delta-G solvation = -21446.138286 eV Core-core repulsion = 18198.626388 eV Total energy + Delta-G solvation = -3247.511898 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.23667 -39.52813 -37.31897 -34.73039 -32.99165 -31.59325 -30.00475 -29.75297 -28.93367 -27.33233 -26.01089 -23.54230 -22.33602 -21.66245 -20.30194 -19.15562 -18.63418 -18.19148 -17.01134 -16.74728 -15.87172 -15.14750 -14.92987 -14.65991 -13.96093 -13.80419 -13.62830 -13.35583 -13.28543 -12.92370 -12.52476 -12.37158 -12.14566 -12.00900 -11.72253 -11.46178 -10.89380 -10.79407 -10.66333 -10.52723 -10.41368 -10.24196 -9.86012 -9.79120 -9.62581 -9.33950 -8.79880 -8.55602 -8.19172 -6.80765 -5.74088 -3.20677 1.85320 2.63780 2.81582 2.98701 3.37696 3.41585 3.45760 3.46753 4.47822 4.50710 4.64968 4.88641 5.03703 5.09098 5.29547 5.33963 5.38662 5.55053 5.57671 5.64327 5.65685 5.82971 5.90007 5.93929 6.04895 6.38445 6.42266 6.50638 6.61170 6.74600 6.87503 6.91881 7.19667 7.36846 7.64563 7.73443 7.80324 7.92258 8.36351 8.54233 9.20625 9.83398 10.31924 11.30492 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039383 B = 0.003395 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.801791 B = 8245.990317 C = 8498.637502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.586 5.586 3 C -0.261 4.261 4 H 0.071 0.929 5 C 0.003 3.997 6 N -0.904 5.904 7 Si 0.907 3.093 8 H -0.288 1.288 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.172 3.828 12 H 0.078 0.922 13 C -0.153 4.153 14 C 0.100 3.900 15 N -0.616 5.616 16 C 0.525 3.475 17 O -0.530 6.530 18 C -0.056 4.056 19 C 0.088 3.912 20 C -0.266 4.266 21 C 0.051 3.949 22 N -0.479 5.479 23 H 0.437 0.563 24 N -0.261 5.261 25 C 0.088 3.912 26 H 0.030 0.970 27 H 0.045 0.955 28 H 0.002 0.998 29 H 0.253 0.747 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.069 0.931 34 H 0.107 0.893 35 H 0.110 0.890 36 H 0.147 0.853 37 H 0.175 0.825 38 H 0.071 0.929 39 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.019 -21.045 -2.607 21.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.306 5.306 3 C -0.390 4.390 4 H 0.089 0.911 5 C -0.195 4.195 6 N -0.548 5.548 7 Si 0.737 3.263 8 H -0.215 1.215 9 H -0.218 1.218 10 H -0.204 1.204 11 C 0.062 3.938 12 H 0.096 0.904 13 C -0.193 4.193 14 C -0.023 4.023 15 N -0.351 5.351 16 C 0.311 3.689 17 O -0.406 6.406 18 C -0.098 4.098 19 C -0.080 4.080 20 C -0.296 4.296 21 C -0.096 4.096 22 N -0.187 5.187 23 H 0.281 0.719 24 N -0.084 5.084 25 C -0.036 4.036 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.021 0.979 29 H 0.064 0.936 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.125 0.875 35 H 0.128 0.872 36 H 0.165 0.835 37 H 0.192 0.808 38 H 0.089 0.911 39 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.705 -20.428 -1.125 20.471 hybrid contribution -0.363 0.436 -0.081 0.573 sum 0.342 -19.992 -1.205 20.031 Atomic orbital electron populations 1.20803 0.82418 0.95707 0.99479 1.43932 1.01924 0.99930 1.84858 1.19246 0.97876 0.85001 1.36905 0.91100 1.25040 0.97842 0.98599 0.98053 1.70092 1.18841 1.27137 1.38774 0.86214 0.78727 0.83919 0.77408 1.21465 1.21768 1.20441 1.21355 0.96342 0.85940 0.90193 0.90426 1.23370 1.02779 0.93320 0.99851 1.22378 1.00037 0.99068 0.80835 1.48553 1.68666 1.07858 1.09997 1.19950 0.77460 0.85341 0.86119 1.90738 1.48874 1.85063 1.15910 1.20024 1.04540 0.89814 0.95406 1.21613 0.95296 0.97040 0.94036 1.21393 1.03947 1.03233 1.01003 1.22527 0.93418 1.00696 0.92948 1.46392 1.23864 1.30516 1.17971 0.71914 1.77433 1.20340 1.05373 1.05259 1.22896 1.02202 0.78663 0.99862 0.95209 0.93650 0.97923 0.93640 0.90353 0.90451 0.91583 0.91257 0.87486 0.87152 0.83484 0.80825 0.91056 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.91 7.82 59.85 0.47 4.38 16 2 N -0.59 -14.35 2.93 -171.39 -0.50 -14.85 16 3 C -0.26 -7.04 9.63 -15.06 -0.14 -7.18 16 4 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 5 C 0.00 0.10 5.08 -17.43 -0.09 0.01 16 6 N -0.90 -26.40 10.67 55.49 0.59 -25.81 16 7 Si 0.91 21.72 29.58 -169.99 -5.03 16.69 16 8 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 9 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 10 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 11 C 0.17 3.40 3.43 -66.10 -0.23 3.18 16 12 H 0.08 1.51 7.92 -51.93 -0.41 1.10 16 13 C -0.15 -2.35 6.61 -24.47 -0.16 -2.51 16 14 C 0.10 1.26 6.70 -2.41 -0.02 1.25 16 15 N -0.62 -10.19 3.32 -170.38 -0.57 -10.76 16 16 C 0.52 8.97 7.84 -10.99 -0.09 8.88 16 17 O -0.53 -11.56 15.89 5.56 0.09 -11.47 16 18 C -0.06 -0.68 5.28 -29.04 -0.15 -0.83 16 19 C 0.09 1.21 6.02 -82.40 -0.50 0.71 16 20 C -0.27 -2.89 10.72 -40.01 -0.43 -3.32 16 21 C 0.05 0.46 11.99 -17.22 -0.21 0.26 16 22 N -0.48 -5.20 7.36 30.45 0.22 -4.98 16 23 H 0.44 3.24 8.96 -182.61 -1.64 1.61 16 24 N -0.26 -3.98 12.04 33.67 0.41 -3.58 16 25 C 0.09 1.77 6.51 -3.07 -0.02 1.75 16 26 H 0.03 0.81 7.33 -51.93 -0.38 0.42 16 27 H 0.04 1.19 7.23 -51.93 -0.38 0.81 16 28 H 0.00 0.05 6.04 -51.92 -0.31 -0.26 16 29 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.08 1.28 6.07 -51.93 -0.32 0.97 16 31 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.67 7.48 -51.93 -0.39 0.29 16 34 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.11 1.01 7.83 -51.93 -0.41 0.60 16 36 H 0.15 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.17 0.81 8.06 -52.49 -0.42 0.38 16 38 H 0.07 1.65 7.11 -51.93 -0.37 1.28 16 39 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 LS Contribution 321.53 15.07 4.85 4.85 Total: -1.00 -35.72 321.53 -8.18 -43.90 By element: Atomic # 1 Polarization: 6.12 SS G_CDS: -6.68 Total: -0.56 kcal Atomic # 6 Polarization: 8.13 SS G_CDS: -1.56 Total: 6.56 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.15 Total: -59.97 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.09 Total: -11.47 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -35.72 -8.18 -43.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971246517.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.607 kcal (2) G-P(sol) polarization free energy of solvation -35.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds