Wall clock time and date at job start Wed Apr 15 2020 11:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.36937 * 119.99464 * 2 1 4 4 H 1.07997 * 119.99970 * 201.72122 * 3 2 1 5 5 C 1.38810 * 120.00253 * 21.73266 * 3 2 1 6 6 N 1.31622 * 119.99725 * 13.64409 * 5 3 2 7 7 Si 1.86798 * 119.99998 * 193.64891 * 5 3 2 8 8 H 1.48501 * 109.47204 * 90.00164 * 7 5 3 9 9 H 1.48511 * 109.46731 * 209.99535 * 7 5 3 10 10 H 1.48494 * 109.47129 * 329.99426 * 7 5 3 11 11 C 1.46499 * 120.00119 * 180.02562 * 2 1 3 12 12 H 1.09004 * 110.63995 * 176.85505 * 11 2 1 13 13 C 1.55152 * 110.87404 * 53.60317 * 11 2 1 14 14 C 1.55129 * 101.48533 * 205.89607 * 13 11 2 15 15 N 1.47421 * 104.72143 * 37.29723 * 14 13 11 16 16 C 1.34779 * 125.65006 * 155.81552 * 15 14 13 17 17 O 1.21280 * 120.00321 * 179.69428 * 16 15 14 18 18 C 1.50698 * 119.99691 * 359.69187 * 16 15 14 19 19 C 1.50700 * 109.46925 * 180.02562 * 18 16 15 20 20 C 1.39878 * 125.89923 * 125.02563 * 19 18 16 21 21 C 1.35319 * 107.91644 * 179.97438 * 20 19 18 22 22 N 1.34946 * 107.74831 * 0.02562 * 21 20 19 23 23 H 0.96999 * 126.03457 * 179.97438 * 22 21 20 24 24 N 1.30839 * 125.90131 * 305.02190 * 19 18 16 25 25 C 1.47023 * 108.70272 * 335.55561 * 15 14 13 26 26 H 1.08999 * 109.46689 * 274.45005 * 1 2 3 27 27 H 1.08990 * 109.47651 * 34.45303 * 1 2 3 28 28 H 1.09008 * 109.47008 * 154.45831 * 1 2 3 29 29 H 0.97002 * 119.99861 * 180.02562 * 6 5 3 30 30 H 1.08994 * 111.00949 * 324.14202 * 13 11 2 31 31 H 1.09007 * 111.00363 * 87.95375 * 13 11 2 32 32 H 1.09000 * 110.50023 * 278.45762 * 14 13 11 33 33 H 1.09002 * 110.34134 * 156.05849 * 14 13 11 34 34 H 1.09001 * 109.47506 * 59.99952 * 18 16 15 35 35 H 1.09005 * 109.47351 * 300.00095 * 18 16 15 36 36 H 1.07991 * 126.04164 * 359.97438 * 20 19 18 37 37 H 1.08001 * 126.12283 * 179.97438 * 21 20 19 38 38 H 1.08994 * 109.88292 * 120.70559 * 25 15 14 39 39 H 1.09008 * 109.87972 * 241.86754 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1721 1.2193 -0.3461 5 6 1.5295 2.3454 0.4451 6 7 0.3965 2.2716 1.1110 7 14 2.3028 4.0101 0.0989 8 1 1.7955 4.5321 -1.1954 9 1 1.9484 4.9564 1.1873 10 1 3.7791 3.8654 0.0300 11 6 2.1976 -1.2687 -0.0006 12 1 3.2718 -1.0921 -0.0565 13 6 1.7290 -2.1771 -1.1679 14 6 2.0623 -3.5875 -0.6146 15 7 1.7546 -3.5076 0.8249 16 6 1.4465 -4.5503 1.6214 17 8 1.2158 -4.3673 2.7979 18 6 1.3887 -5.9435 1.0501 19 6 1.0252 -6.9187 2.1400 20 6 -0.0431 -7.8211 2.1104 21 6 -0.0322 -8.5173 3.2707 22 7 1.0058 -8.0710 4.0086 23 1 1.2580 -8.3888 4.8896 24 7 1.6545 -7.0676 3.2774 25 6 1.8456 -2.1028 1.2492 26 1 -0.3633 0.0797 1.0246 27 1 -0.3634 0.8473 -0.5813 28 1 -0.3633 -0.9273 -0.4431 29 1 -0.0370 3.0818 1.4217 30 1 0.6593 -2.0657 -1.3446 31 1 2.2963 -1.9706 -2.0755 32 1 3.1172 -3.8170 -0.7648 33 1 1.4372 -4.3403 -1.0949 34 1 2.3619 -6.2071 0.6359 35 1 0.6361 -5.9824 0.2625 36 1 -0.7514 -7.9409 1.3041 37 1 -0.7298 -9.2910 3.5556 38 1 0.8888 -1.7757 1.6559 39 1 2.6275 -1.9925 2.0007 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971246517.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:44:22 Heat of formation + Delta-G solvation = 48.511694 kcal Electronic energy + Delta-G solvation = -21447.274265 eV Core-core repulsion = 18198.626388 eV Total energy + Delta-G solvation = -3248.647877 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.07866 -40.86985 -38.83729 -36.50447 -34.00820 -33.35392 -31.28887 -30.79893 -30.10707 -28.69291 -28.04660 -25.18605 -23.83485 -22.48807 -21.34630 -20.75225 -19.76845 -18.99362 -18.92111 -18.02486 -17.43197 -16.65783 -16.36177 -15.86693 -15.40239 -15.04269 -14.76634 -14.73355 -14.44629 -14.34622 -13.96974 -13.68916 -13.50185 -13.25598 -13.10694 -12.91542 -12.74253 -12.49472 -12.37096 -12.18252 -12.06771 -11.78365 -11.53395 -11.37174 -10.91253 -10.63316 -10.33353 -9.60189 -9.56398 -8.82833 -7.83562 -5.32650 1.05650 1.48067 1.48809 1.58007 1.69777 1.74636 2.08968 2.23275 2.52255 3.28847 3.55973 3.62645 3.78425 3.89031 4.05565 4.20465 4.31368 4.38965 4.42297 4.52108 4.55593 4.70752 4.81385 4.83999 4.90698 4.95463 5.08787 5.13794 5.22512 5.29506 5.36269 5.48365 5.64601 5.70634 5.73311 6.30868 6.54870 6.64925 6.81442 7.12580 7.24071 7.84443 8.28615 9.19715 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.039383 B = 0.003395 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.801791 B = 8245.990317 C = 8498.637502 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.602 5.602 3 C -0.265 4.265 4 H 0.080 0.920 5 C -0.056 4.056 6 N -0.941 5.941 7 Si 0.973 3.027 8 H -0.283 1.283 9 H -0.300 1.300 10 H -0.265 1.265 11 C 0.164 3.836 12 H 0.081 0.919 13 C -0.140 4.140 14 C 0.104 3.896 15 N -0.615 5.615 16 C 0.518 3.482 17 O -0.589 6.589 18 C -0.045 4.045 19 C 0.066 3.934 20 C -0.285 4.285 21 C 0.066 3.934 22 N -0.480 5.480 23 H 0.448 0.552 24 N -0.324 5.324 25 C 0.100 3.900 26 H -0.009 1.009 27 H 0.020 0.980 28 H 0.035 0.965 29 H 0.247 0.753 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.114 0.886 34 H 0.134 0.866 35 H 0.149 0.851 36 H 0.173 0.827 37 H 0.221 0.779 38 H 0.029 0.971 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 -23.659 -4.999 24.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.323 5.323 3 C -0.395 4.395 4 H 0.098 0.902 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.801 3.199 8 H -0.210 1.210 9 H -0.227 1.227 10 H -0.190 1.190 11 C 0.055 3.945 12 H 0.099 0.901 13 C -0.179 4.179 14 C -0.018 4.018 15 N -0.349 5.349 16 C 0.307 3.693 17 O -0.469 6.469 18 C -0.086 4.086 19 C -0.101 4.101 20 C -0.314 4.314 21 C -0.082 4.082 22 N -0.189 5.189 23 H 0.293 0.707 24 N -0.148 5.148 25 C -0.027 4.027 26 H 0.009 0.991 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.132 0.868 34 H 0.152 0.848 35 H 0.166 0.834 36 H 0.190 0.810 37 H 0.237 0.763 38 H 0.048 0.952 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.225 -23.094 -3.569 23.400 hybrid contribution -0.505 1.134 0.726 1.438 sum 0.721 -21.960 -2.842 22.155 Atomic orbital electron populations 1.20453 0.82908 0.96159 0.96921 1.44140 1.01980 1.01134 1.85079 1.19668 0.98229 0.86097 1.35543 0.90240 1.25864 0.98607 1.02160 0.98497 1.70285 1.20527 1.27417 1.40567 0.85173 0.78501 0.79424 0.76767 1.20964 1.22744 1.19001 1.21593 0.96218 0.84755 0.91915 0.90086 1.23252 1.02405 0.93553 0.98692 1.22685 1.02815 0.98365 0.77910 1.48630 1.68357 1.06013 1.11901 1.20962 0.75813 0.87064 0.85452 1.90711 1.51364 1.86116 1.18719 1.20132 1.07272 0.85516 0.95631 1.22041 0.96204 0.97820 0.94040 1.21807 1.03888 1.03129 1.02562 1.23304 0.92631 1.00381 0.91863 1.46458 1.24136 1.29799 1.18498 0.70683 1.77330 1.22841 1.07800 1.06826 1.22437 0.99062 0.81677 0.99482 0.99102 0.96088 0.94667 0.94378 0.91240 0.87983 0.88724 0.86757 0.84815 0.83364 0.80991 0.76270 0.95201 0.94773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.09 7.82 127.77 1.00 10.09 16 2 N -0.60 -29.91 2.93 -696.16 -2.04 -31.95 16 3 C -0.27 -14.45 9.63 84.03 0.81 -13.64 16 4 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 5 C -0.06 -3.19 5.08 84.86 0.43 -2.76 16 6 N -0.94 -57.23 10.67 21.65 0.23 -57.00 16 7 Si 0.97 45.34 29.58 68.60 2.03 47.37 16 8 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 9 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 C 0.16 6.38 3.43 46.18 0.16 6.54 16 12 H 0.08 3.08 7.92 -2.38 -0.02 3.06 16 13 C -0.14 -3.84 6.61 32.06 0.21 -3.63 16 14 C 0.10 2.16 6.70 86.93 0.58 2.74 16 15 N -0.61 -19.49 3.32 -811.36 -2.70 -22.19 16 16 C 0.52 17.25 7.84 87.66 0.69 17.93 16 17 O -0.59 -26.56 15.89 -3.03 -0.05 -26.60 16 18 C -0.04 -0.95 5.28 29.10 0.15 -0.80 16 19 C 0.07 1.70 6.02 43.10 0.26 1.96 16 20 C -0.28 -5.39 10.72 21.99 0.24 -5.15 16 21 C 0.07 1.00 11.99 83.54 1.00 2.01 16 22 N -0.48 -9.85 7.36 -57.59 -0.42 -10.27 16 23 H 0.45 6.30 8.96 -213.34 -1.91 4.39 16 24 N -0.32 -9.78 12.04 -47.38 -0.57 -10.35 16 25 C 0.10 4.11 6.51 86.73 0.56 4.67 16 26 H -0.01 -0.54 7.33 -2.39 -0.02 -0.56 16 27 H 0.02 1.12 7.23 -2.39 -0.02 1.10 16 28 H 0.04 1.50 6.04 -2.38 -0.01 1.49 16 29 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 30 H 0.07 2.06 6.07 -2.39 -0.01 2.05 16 31 H 0.10 2.36 8.14 -2.38 -0.02 2.35 16 32 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 33 H 0.11 1.48 7.48 -2.39 -0.02 1.46 16 34 H 0.13 2.11 8.14 -2.39 -0.02 2.10 16 35 H 0.15 1.97 7.83 -2.38 -0.02 1.95 16 36 H 0.17 2.19 8.06 -2.92 -0.02 2.16 16 37 H 0.22 1.07 8.06 -2.91 -0.02 1.04 16 38 H 0.03 1.46 7.11 -2.39 -0.02 1.45 16 39 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -84.45 321.53 1.73 -82.73 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -0.85 Total: 8.31 kcal Atomic # 6 Polarization: 13.87 SS G_CDS: 6.09 Total: 19.97 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -5.50 Total: -131.77 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.60 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -84.45 1.73 -82.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971246517.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.238 kcal (2) G-P(sol) polarization free energy of solvation -84.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds