Wall clock time and date at job start Wed Apr 15 2020 11:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00425 * 2 1 4 4 O 1.21276 * 120.00166 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.99668 * 0.02562 * 3 2 1 6 6 C 1.50698 * 109.47002 * 179.97438 * 5 3 2 7 7 N 1.30499 * 125.65215 * 304.95968 * 6 5 3 8 8 C 1.34129 * 109.25449 * 180.02562 * 7 6 5 9 9 C 1.34671 * 108.02244 * 359.73194 * 8 7 6 10 10 N 1.35049 * 125.64588 * 125.00057 * 6 5 3 11 11 H 0.97001 * 126.39625 * 359.96021 * 10 6 5 12 12 C 1.46503 * 119.99936 * 179.97438 * 2 1 3 13 13 H 1.09006 * 110.64125 * 181.68625 * 12 2 1 14 14 C 1.55149 * 110.72301 * 305.02630 * 12 2 1 15 15 C 1.54910 * 101.58617 * 153.86254 * 14 12 2 16 16 N 1.47430 * 104.83065 * 322.99339 * 15 14 12 17 17 C 1.36929 * 125.64759 * 204.16264 * 16 15 14 18 18 H 1.07998 * 120.00144 * 179.97438 * 17 16 15 19 19 C 1.38816 * 120.00199 * 359.95307 * 17 16 15 20 20 N 1.31614 * 119.99624 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46882 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46759 * 120.00207 * 21 19 17 24 24 H 1.48503 * 109.47127 * 240.00607 * 21 19 17 25 25 C 1.47027 * 108.70381 * 24.12642 * 16 15 14 26 26 H 1.09006 * 109.47048 * 89.99943 * 1 2 3 27 27 H 1.08995 * 109.47357 * 209.99526 * 1 2 3 28 28 H 1.09000 * 109.47202 * 330.00005 * 1 2 3 29 29 H 1.08993 * 109.47065 * 59.99720 * 5 3 2 30 30 H 1.08997 * 109.46951 * 299.99727 * 5 3 2 31 31 H 1.07998 * 125.98600 * 180.02562 * 8 7 6 32 32 H 1.07996 * 126.59545 * 180.28631 * 9 8 7 33 33 H 1.09000 * 111.00404 * 271.94076 * 14 12 2 34 34 H 1.08998 * 111.00498 * 35.78836 * 14 12 2 35 35 H 1.08993 * 110.37221 * 204.15295 * 15 14 12 36 36 H 1.09004 * 110.45428 * 81.87409 * 15 14 12 37 37 H 0.97005 * 119.99746 * 180.02562 * 20 19 17 38 38 H 1.08997 * 109.88167 * 239.52547 * 25 16 15 39 39 H 1.08994 * 109.88174 * 118.36053 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3647 3.6177 0.0011 7 7 3.3209 3.8006 0.8702 8 6 3.9918 4.9200 0.5607 9 6 3.4339 5.4478 -0.5455 10 7 2.3978 4.6254 -0.8974 11 1 1.8015 4.7421 -1.6536 12 6 2.1975 -1.2688 0.0006 13 1 3.2726 -1.0917 0.0305 14 6 1.7507 -2.1601 1.1893 15 6 2.0637 -3.5781 0.6497 16 7 1.7323 -3.5174 -0.7856 17 6 1.3990 -4.5865 -1.5735 18 1 1.1717 -4.4369 -2.6187 19 6 1.3535 -5.8626 -1.0291 20 7 1.6304 -6.0448 0.2446 21 14 0.8980 -7.3210 -2.1039 22 1 0.6338 -6.8523 -3.4881 23 1 2.0187 -8.2952 -2.1171 24 1 -0.3199 -7.9746 -1.5611 25 6 1.8182 -2.1187 -1.2305 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5138 29 1 0.7591 2.5298 0.8907 30 1 0.7585 2.5303 -0.8891 31 1 4.8350 5.3244 1.1010 32 1 3.7428 6.3482 -1.0555 33 1 2.3372 -1.9435 2.0821 34 1 0.6850 -2.0435 1.3861 35 1 1.4430 -4.3204 1.1513 36 1 3.1194 -3.8129 0.7857 37 1 1.5990 -6.9366 0.6250 38 1 0.8541 -1.7944 -1.6221 39 1 2.5848 -2.0207 -1.9991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033544875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:08 Heat of formation + Delta-G solvation = 65.180798 kcal Electronic energy + Delta-G solvation = -21564.244491 eV Core-core repulsion = 18316.319441 eV Total energy + Delta-G solvation = -3247.925050 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.14242 -39.73725 -37.28096 -34.74549 -32.64413 -32.48250 -31.68025 -29.24725 -27.97455 -27.20665 -26.28412 -24.38619 -21.74129 -21.42512 -20.21299 -20.18678 -18.73805 -17.96264 -17.11753 -16.94560 -15.83023 -15.58583 -14.78083 -14.69112 -14.25214 -14.17604 -13.89620 -13.57232 -13.20980 -13.00082 -12.88240 -12.51837 -12.27279 -12.02358 -11.79794 -11.50845 -11.03164 -10.82485 -10.80328 -10.38346 -10.09789 -10.09258 -10.00081 -9.81498 -9.58070 -9.52585 -8.66401 -8.51692 -8.29902 -6.84605 -5.65847 -3.08171 1.88250 2.78134 2.82066 3.07814 3.36388 3.39587 3.45062 3.47444 4.18828 4.49043 4.65297 4.73168 5.00009 5.06885 5.22000 5.34026 5.40729 5.44424 5.54245 5.57417 5.63068 5.75905 5.77568 5.94670 5.96786 6.25278 6.40298 6.59487 6.60608 6.64604 6.71881 7.01389 7.18709 7.50914 7.61522 7.64245 7.84709 8.05375 8.33883 8.39870 9.20934 9.81586 10.46107 11.37829 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.046519 B = 0.003340 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.753884 B = 8381.401907 C = 8481.213196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.603 5.603 3 C 0.516 3.484 4 O -0.518 6.518 5 C -0.053 4.053 6 C 0.221 3.779 7 N -0.460 5.460 8 C -0.026 4.026 9 C -0.060 4.060 10 N -0.568 5.568 11 H 0.417 0.583 12 C 0.128 3.872 13 H 0.103 0.897 14 C -0.152 4.152 15 C 0.153 3.847 16 N -0.603 5.603 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.011 4.011 20 N -0.921 5.921 21 Si 0.915 3.085 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.130 3.870 26 H 0.056 0.944 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.169 0.831 32 H 0.176 0.824 33 H 0.062 0.938 34 H 0.065 0.935 35 H 0.109 0.891 36 H 0.015 0.985 37 H 0.252 0.748 38 H 0.027 0.973 39 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.041 21.313 -0.855 21.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 N -0.336 5.336 3 C 0.301 3.699 4 O -0.393 6.393 5 C -0.095 4.095 6 C -0.044 4.044 7 N -0.179 5.179 8 C -0.175 4.175 9 C -0.193 4.193 10 N -0.171 5.171 11 H 0.254 0.746 12 C 0.025 3.975 13 H 0.121 0.879 14 C -0.192 4.192 15 C 0.028 3.972 16 N -0.329 5.329 17 C -0.350 4.350 18 H 0.095 0.905 19 C -0.207 4.207 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.206 1.206 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.003 3.997 26 H 0.075 0.925 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.186 0.814 32 H 0.193 0.807 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.127 0.873 36 H 0.033 0.967 37 H 0.063 0.937 38 H 0.045 0.955 39 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -3.196 20.579 -0.148 20.826 hybrid contribution -0.644 -0.072 -1.709 1.827 sum -3.840 20.507 -1.856 20.946 Atomic orbital electron populations 1.21820 0.79880 1.03375 1.01951 1.47811 1.06858 1.05815 1.73140 1.20026 0.88090 0.84551 0.77195 1.90756 1.13513 1.86775 1.48251 1.19992 0.95457 0.88559 1.05509 1.22413 0.99509 0.92406 0.90057 1.70269 1.05489 1.16097 1.26008 1.22397 1.02763 0.94603 0.97758 1.22708 0.94261 1.00270 1.02098 1.43233 1.27344 1.21216 1.25334 0.74595 1.22235 0.97175 0.81208 0.96921 0.87899 1.23389 1.00620 0.98648 0.96525 1.21940 0.98942 0.91875 0.84467 1.44452 1.80967 1.00774 1.06739 1.19109 1.38733 0.85007 0.92150 0.90459 1.24795 1.02039 0.97397 0.96428 1.69798 1.55495 1.20711 1.10989 0.85993 0.77674 0.82587 0.79198 1.20559 1.21734 1.21736 1.21510 0.97835 0.86293 0.94036 0.92511 0.89904 0.91499 0.86384 0.87678 0.81408 0.80689 0.91957 0.91623 0.87304 0.96706 0.93730 0.95529 0.95883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.81 9.13 59.85 0.55 1.36 16 2 N -0.60 -9.11 2.88 -171.83 -0.50 -9.60 16 3 C 0.52 7.95 7.66 -10.98 -0.08 7.86 16 4 O -0.52 -10.42 14.92 5.56 0.08 -10.34 16 5 C -0.05 -0.56 4.88 -29.03 -0.14 -0.70 16 6 C 0.22 2.76 6.96 -155.41 -1.08 1.68 16 7 N -0.46 -7.10 10.58 -10.81 -0.11 -7.22 16 8 C -0.03 -0.32 11.87 -17.81 -0.21 -0.53 16 9 C -0.06 -0.55 12.04 -16.56 -0.20 -0.75 16 10 N -0.57 -5.15 6.15 -10.23 -0.06 -5.22 16 11 H 0.42 2.21 8.96 -40.82 -0.37 1.84 16 12 C 0.13 2.42 3.36 -66.10 -0.22 2.19 16 13 H 0.10 2.15 6.99 -51.93 -0.36 1.79 16 14 C -0.15 -2.95 6.61 -24.59 -0.16 -3.11 16 15 C 0.15 3.74 5.89 -2.53 -0.01 3.73 16 16 N -0.60 -15.51 3.39 -170.07 -0.58 -16.09 16 17 C -0.22 -6.17 10.27 -15.06 -0.15 -6.33 16 18 H 0.08 2.09 7.83 -52.49 -0.41 1.67 16 19 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 20 N -0.92 -26.77 10.09 55.49 0.56 -26.21 16 21 Si 0.91 21.98 29.55 -169.99 -5.02 16.96 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 C 0.13 2.79 6.88 -3.06 -0.02 2.77 16 26 H 0.06 0.58 7.89 -51.93 -0.41 0.17 16 27 H 0.08 1.03 6.08 -51.93 -0.32 0.72 16 28 H 0.07 0.51 6.44 -51.93 -0.33 0.18 16 29 H 0.12 0.99 7.40 -51.93 -0.38 0.60 16 30 H 0.11 0.71 8.11 -51.93 -0.42 0.29 16 31 H 0.17 1.64 8.06 -52.49 -0.42 1.22 16 32 H 0.18 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 34 H 0.07 1.18 6.09 -51.93 -0.32 0.87 16 35 H 0.11 2.95 5.87 -51.93 -0.30 2.65 16 36 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 38 H 0.03 0.54 6.94 -51.93 -0.36 0.18 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 LS Contribution 317.39 15.07 4.78 4.78 Total: -1.00 -36.39 317.39 -7.93 -44.32 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -5.24 Total: 0.85 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -1.84 Total: 7.76 kcal Atomic # 7 Polarization: -63.64 SS G_CDS: -0.69 Total: -64.33 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -36.39 -7.93 -44.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033544875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.500 kcal (2) G-P(sol) polarization free energy of solvation -36.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds