Wall clock time and date at job start Wed Apr 15 2020 11:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34777 * 120.00425 * 2 1 4 4 O 1.21276 * 120.00166 * 180.02562 * 3 2 1 5 5 C 1.50708 * 119.99668 * 0.02562 * 3 2 1 6 6 C 1.50698 * 109.47002 * 179.97438 * 5 3 2 7 7 N 1.30499 * 125.65215 * 304.95968 * 6 5 3 8 8 C 1.34129 * 109.25449 * 180.02562 * 7 6 5 9 9 C 1.34671 * 108.02244 * 359.73194 * 8 7 6 10 10 N 1.35049 * 125.64588 * 125.00057 * 6 5 3 11 11 H 0.97001 * 126.39625 * 359.96021 * 10 6 5 12 12 C 1.46503 * 119.99936 * 179.97438 * 2 1 3 13 13 H 1.09006 * 110.64125 * 181.68625 * 12 2 1 14 14 C 1.55149 * 110.72301 * 305.02630 * 12 2 1 15 15 C 1.54910 * 101.58617 * 153.86254 * 14 12 2 16 16 N 1.47430 * 104.83065 * 322.99339 * 15 14 12 17 17 C 1.36929 * 125.64759 * 204.16264 * 16 15 14 18 18 H 1.07998 * 120.00144 * 179.97438 * 17 16 15 19 19 C 1.38816 * 120.00199 * 359.95307 * 17 16 15 20 20 N 1.31614 * 119.99624 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 120.00198 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46882 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46759 * 120.00207 * 21 19 17 24 24 H 1.48503 * 109.47127 * 240.00607 * 21 19 17 25 25 C 1.47027 * 108.70381 * 24.12642 * 16 15 14 26 26 H 1.09006 * 109.47048 * 89.99943 * 1 2 3 27 27 H 1.08995 * 109.47357 * 209.99526 * 1 2 3 28 28 H 1.09000 * 109.47202 * 330.00005 * 1 2 3 29 29 H 1.08993 * 109.47065 * 59.99720 * 5 3 2 30 30 H 1.08997 * 109.46951 * 299.99727 * 5 3 2 31 31 H 1.07998 * 125.98600 * 180.02562 * 8 7 6 32 32 H 1.07996 * 126.59545 * 180.28631 * 9 8 7 33 33 H 1.09000 * 111.00404 * 271.94076 * 14 12 2 34 34 H 1.08998 * 111.00498 * 35.78836 * 14 12 2 35 35 H 1.08993 * 110.37221 * 204.15295 * 15 14 12 36 36 H 1.09004 * 110.45428 * 81.87409 * 15 14 12 37 37 H 0.97005 * 119.99746 * 180.02562 * 20 19 17 38 38 H 1.08997 * 109.88167 * 239.52547 * 25 16 15 39 39 H 1.08994 * 109.88174 * 118.36053 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 3.3517 1.1671 -0.0005 5 6 1.3854 2.4723 0.0006 6 6 2.3647 3.6177 0.0011 7 7 3.3209 3.8006 0.8702 8 6 3.9918 4.9200 0.5607 9 6 3.4339 5.4478 -0.5455 10 7 2.3978 4.6254 -0.8974 11 1 1.8015 4.7421 -1.6536 12 6 2.1975 -1.2688 0.0006 13 1 3.2726 -1.0917 0.0305 14 6 1.7507 -2.1601 1.1893 15 6 2.0637 -3.5781 0.6497 16 7 1.7323 -3.5174 -0.7856 17 6 1.3990 -4.5865 -1.5735 18 1 1.1717 -4.4369 -2.6187 19 6 1.3535 -5.8626 -1.0291 20 7 1.6304 -6.0448 0.2446 21 14 0.8980 -7.3210 -2.1039 22 1 0.6338 -6.8523 -3.4881 23 1 2.0187 -8.2952 -2.1171 24 1 -0.3199 -7.9746 -1.5611 25 6 1.8182 -2.1187 -1.2305 26 1 -0.3633 0.0000 -1.0277 27 1 -0.3634 -0.8900 0.5137 28 1 -0.3633 0.8900 0.5138 29 1 0.7591 2.5298 0.8907 30 1 0.7585 2.5303 -0.8891 31 1 4.8350 5.3244 1.1010 32 1 3.7428 6.3482 -1.0555 33 1 2.3372 -1.9435 2.0821 34 1 0.6850 -2.0435 1.3861 35 1 1.4430 -4.3204 1.1513 36 1 3.1194 -3.8129 0.7857 37 1 1.5990 -6.9366 0.6250 38 1 0.8541 -1.7944 -1.6221 39 1 2.5848 -2.0207 -1.9991 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033544875.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:07 Heat of formation + Delta-G solvation = 38.953680 kcal Electronic energy + Delta-G solvation = -21565.381784 eV Core-core repulsion = 18316.319441 eV Total energy + Delta-G solvation = -3249.062343 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.93686 -41.01583 -38.91972 -36.21702 -34.19495 -33.40105 -32.87379 -31.07365 -29.39499 -28.21912 -27.57232 -26.27256 -22.73744 -22.40563 -22.12977 -21.31087 -19.99227 -18.95956 -18.78359 -18.27171 -17.15472 -16.69846 -16.57640 -15.98638 -15.63080 -15.37734 -14.94358 -14.67532 -14.44360 -14.25351 -13.96158 -13.90038 -13.63135 -13.44053 -13.14553 -12.98772 -12.90774 -12.72016 -12.34562 -12.12156 -11.97610 -11.82453 -11.37717 -10.94887 -10.89918 -10.81187 -10.74974 -9.58808 -9.30514 -8.92257 -7.77873 -5.23914 1.10618 1.47744 1.49291 1.59443 1.66525 1.86493 2.28909 2.39868 2.51670 3.32498 3.37446 3.64998 3.77110 3.92554 4.02513 4.06549 4.25192 4.30266 4.42044 4.46854 4.56569 4.60285 4.69204 4.74919 4.82895 4.87556 4.98665 5.08024 5.12329 5.17753 5.45426 5.55995 5.61549 5.77105 5.86303 6.28080 6.45360 6.60651 7.08651 7.23261 7.25762 7.74806 8.38937 9.24120 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.046519 B = 0.003340 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.753884 B = 8381.401907 C = 8481.213196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.601 5.601 3 C 0.511 3.489 4 O -0.575 6.575 5 C -0.042 4.042 6 C 0.199 3.801 7 N -0.517 5.517 8 C -0.071 4.071 9 C -0.035 4.035 10 N -0.553 5.553 11 H 0.436 0.564 12 C 0.142 3.858 13 H 0.076 0.924 14 C -0.133 4.133 15 C 0.156 3.844 16 N -0.622 5.622 17 C -0.239 4.239 18 H 0.082 0.918 19 C -0.066 4.066 20 N -0.949 5.949 21 Si 0.983 3.017 22 H -0.266 1.266 23 H -0.295 1.295 24 H -0.287 1.287 25 C 0.133 3.867 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.145 0.855 30 H 0.151 0.849 31 H 0.175 0.825 32 H 0.217 0.783 33 H 0.072 0.928 34 H 0.086 0.914 35 H 0.082 0.918 36 H -0.019 1.019 37 H 0.248 0.752 38 H 0.047 0.953 39 H 0.009 0.991 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.313 23.529 -2.234 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.333 5.333 3 C 0.299 3.701 4 O -0.453 6.453 5 C -0.083 4.083 6 C -0.066 4.066 7 N -0.237 5.237 8 C -0.218 4.218 9 C -0.169 4.169 10 N -0.158 5.158 11 H 0.277 0.723 12 C 0.037 3.963 13 H 0.094 0.906 14 C -0.172 4.172 15 C 0.031 3.969 16 N -0.349 5.349 17 C -0.368 4.368 18 H 0.100 0.900 19 C -0.258 4.258 20 N -0.598 5.598 21 Si 0.811 3.189 22 H -0.190 1.190 23 H -0.223 1.223 24 H -0.214 1.214 25 C 0.006 3.994 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.130 0.870 29 H 0.162 0.838 30 H 0.168 0.832 31 H 0.192 0.808 32 H 0.234 0.766 33 H 0.091 0.909 34 H 0.104 0.896 35 H 0.100 0.900 36 H -0.001 1.001 37 H 0.058 0.942 38 H 0.065 0.935 39 H 0.027 0.973 Dipole moment (debyes) X Y Z Total from point charges -5.525 22.839 -1.557 23.549 hybrid contribution 0.116 -0.698 -1.306 1.485 sum -5.410 22.141 -2.863 22.972 Atomic orbital electron populations 1.22145 0.76937 1.04999 1.03516 1.47827 1.08442 1.04234 1.72817 1.20948 0.87730 0.85909 0.75482 1.90739 1.16291 1.87613 1.50682 1.20088 0.94845 0.84488 1.08862 1.22676 0.99707 0.93664 0.90510 1.70166 1.07293 1.17895 1.28353 1.22769 1.04147 0.95022 0.99891 1.23292 0.92658 1.00465 1.00517 1.43191 1.27301 1.20162 1.25186 0.72257 1.21708 0.96338 0.82934 0.95307 0.90592 1.23177 1.02040 0.95194 0.96801 1.21709 0.96287 0.94455 0.84465 1.44723 1.80817 1.02158 1.07180 1.19481 1.38529 0.86035 0.92728 0.89998 1.25661 1.02376 1.00043 0.97759 1.70041 1.56406 1.20872 1.12528 0.84943 0.76925 0.78836 0.78176 1.19038 1.22258 1.21407 1.21582 0.98240 0.84736 0.94793 0.90951 0.91173 0.87010 0.83767 0.83167 0.80761 0.76605 0.90933 0.89573 0.89985 1.00077 0.94215 0.93519 0.97273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 9.13 127.77 1.17 2.37 16 2 N -0.60 -16.93 2.88 -815.95 -2.35 -19.29 16 3 C 0.51 14.89 7.66 87.66 0.67 15.56 16 4 O -0.57 -23.37 14.92 -3.02 -0.05 -23.41 16 5 C -0.04 -0.72 4.88 29.10 0.14 -0.58 16 6 C 0.20 4.55 6.96 138.13 0.96 5.51 16 7 N -0.52 -15.77 10.58 -188.13 -1.99 -17.76 16 8 C -0.07 -1.68 11.87 83.52 0.99 -0.69 16 9 C -0.03 -0.54 12.04 83.09 1.00 0.46 16 10 N -0.55 -8.26 6.15 -186.27 -1.15 -9.41 16 11 H 0.44 2.78 8.96 -92.71 -0.83 1.95 16 12 C 0.14 5.37 3.36 46.18 0.16 5.53 16 13 H 0.08 3.31 6.99 -2.38 -0.02 3.29 16 14 C -0.13 -5.14 6.61 31.98 0.21 -4.93 16 15 C 0.16 7.93 5.89 86.85 0.51 8.44 16 16 N -0.62 -32.61 3.39 -691.97 -2.35 -34.96 16 17 C -0.24 -13.45 10.27 84.04 0.86 -12.58 16 18 H 0.08 4.41 7.83 -2.91 -0.02 4.38 16 19 C -0.07 -3.73 5.49 84.86 0.47 -3.27 16 20 N -0.95 -56.67 10.09 21.65 0.22 -56.45 16 21 Si 0.98 45.48 29.55 68.60 2.03 47.51 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 H -0.30 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.29 -13.08 7.11 99.48 0.71 -12.37 16 25 C 0.13 5.68 6.88 86.73 0.60 6.28 16 26 H 0.07 1.15 7.89 -2.38 -0.02 1.14 16 27 H 0.07 1.52 6.08 -2.39 -0.01 1.51 16 28 H 0.11 1.09 6.44 -2.39 -0.02 1.07 16 29 H 0.14 1.74 7.40 -2.39 -0.02 1.72 16 30 H 0.15 1.18 8.11 -2.39 -0.02 1.16 16 31 H 0.18 3.48 8.06 -2.91 -0.02 3.45 16 32 H 0.22 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 34 H 0.09 2.99 6.09 -2.39 -0.01 2.97 16 35 H 0.08 4.63 5.87 -2.39 -0.01 4.61 16 36 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 37 H 0.25 14.32 8.31 -92.70 -0.77 13.55 16 38 H 0.05 1.82 6.94 -2.39 -0.02 1.80 16 39 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -84.42 317.39 2.34 -82.08 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: 0.24 Total: 9.60 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 7.74 Total: 22.09 kcal Atomic # 7 Polarization: -130.24 SS G_CDS: -7.62 Total: -137.86 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.41 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 2.03 Total: 47.51 kcal Total: -84.42 2.34 -82.08 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033544875.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.034 kcal (2) G-P(sol) polarization free energy of solvation -84.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds