Wall clock time and date at job start Wed Apr 15 2020 11:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35753 * 117.00249 * 2 1 4 4 N 1.32256 * 120.11454 * 359.97438 * 3 2 1 5 5 C 1.32420 * 120.02059 * 180.02562 * 4 3 2 6 6 C 1.37957 * 120.25320 * 0.02562 * 5 4 3 7 7 N 1.32393 * 120.23751 * 359.97438 * 6 5 4 8 8 C 1.32454 * 119.97366 * 359.97438 * 7 6 5 9 9 N 1.39191 * 120.12596 * 180.02562 * 8 7 6 10 10 C 1.46958 * 110.99699 * 123.78010 * 9 8 7 11 11 C 1.53051 * 109.36138 * 176.81379 * 10 9 8 12 12 N 1.46962 * 109.36347 * 58.39853 * 11 10 9 13 13 C 1.46899 * 110.99770 * 176.81125 * 12 11 10 14 14 C 1.50699 * 109.47172 * 58.98044 * 13 12 11 15 15 H 1.07999 * 120.00050 * 5.00820 * 14 13 12 16 16 C 1.37885 * 120.00034 * 185.01079 * 14 13 12 17 17 N 1.31508 * 119.99783 * 359.97438 * 16 14 13 18 18 Si 1.86802 * 119.99707 * 180.02562 * 16 14 13 19 19 H 1.48491 * 109.47292 * 359.97438 * 18 16 14 20 20 H 1.48501 * 109.47062 * 120.00185 * 18 16 14 21 21 H 1.48501 * 109.46778 * 239.99435 * 18 16 14 22 22 C 1.46959 * 110.88132 * 300.67965 * 12 11 10 23 23 C 1.46962 * 110.99716 * 359.97438 * 9 8 7 24 24 H 1.09003 * 109.46924 * 300.00086 * 1 2 3 25 25 H 1.09000 * 109.47242 * 60.00202 * 1 2 3 26 26 H 1.09002 * 109.47234 * 180.02562 * 1 2 3 27 27 H 1.07994 * 119.87500 * 179.72768 * 5 4 3 28 28 H 1.08002 * 119.87912 * 180.02562 * 6 5 4 29 29 H 1.09002 * 109.48738 * 296.77980 * 10 9 8 30 30 H 1.08997 * 109.48983 * 56.84470 * 10 9 8 31 31 H 1.08999 * 109.48649 * 298.43482 * 11 10 9 32 32 H 1.08993 * 109.48962 * 178.36782 * 11 10 9 33 33 H 1.09002 * 109.47521 * 178.97974 * 13 12 11 34 34 H 1.09000 * 109.47385 * 298.98304 * 13 12 11 35 35 H 0.97006 * 120.00049 * 180.02562 * 17 16 14 36 36 H 1.09002 * 109.48738 * 299.35304 * 22 12 11 37 37 H 1.08997 * 109.48648 * 179.29019 * 22 12 11 38 38 H 1.08993 * 109.49080 * 303.15591 * 23 9 8 39 39 H 1.09002 * 109.48704 * 63.19835 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2095 0.0000 4 7 1.3273 2.3202 -0.0005 5 6 1.9305 3.4991 -0.0010 6 6 3.3079 3.5750 -0.0016 7 7 4.0366 2.4697 -0.0011 8 6 3.4429 1.2857 0.0005 9 7 4.2059 0.1215 0.0016 10 6 3.8569 -0.7358 1.1430 11 6 4.6586 -2.0371 1.0640 12 7 6.0947 -1.7255 1.0627 13 6 6.9000 -2.9541 1.0638 14 6 6.5623 -3.7772 -0.1525 15 1 5.8842 -3.3873 -0.8971 16 6 7.1189 -5.0282 -0.3146 17 7 7.9450 -5.5028 0.5920 18 14 6.7008 -6.0482 -1.8227 19 1 5.7559 -5.2934 -2.6843 20 1 7.9424 -6.3381 -2.5840 21 1 6.0713 -7.3244 -1.3980 22 6 6.4436 -0.8681 -0.0788 23 6 5.6421 0.4332 0.0001 24 1 -0.3633 0.5139 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.3419 4.4045 -0.0059 28 1 3.7936 4.5397 -0.0016 29 1 4.0944 -0.2182 2.0725 30 1 2.7912 -0.9628 1.1149 31 1 4.4008 -2.5679 0.1475 32 1 4.4229 -2.6623 1.9251 33 1 7.9586 -2.6948 1.0445 34 1 6.6833 -3.5297 1.9637 35 1 8.3369 -6.3828 0.4778 36 1 6.2061 -1.3857 -1.0083 37 1 7.5093 -0.6411 -0.0507 38 1 5.8777 1.0583 -0.8611 39 1 5.8998 0.9644 0.9164 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001165056274.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:17 Heat of formation + Delta-G solvation = 16.648838 kcal Electronic energy + Delta-G solvation = -22116.709290 eV Core-core repulsion = 18866.679737 eV Total energy + Delta-G solvation = -3250.029554 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.50799 -40.12981 -39.32791 -37.09011 -34.83148 -34.20119 -31.98885 -31.56407 -29.29923 -28.43686 -26.98351 -25.26835 -24.54392 -23.94763 -23.25430 -20.86394 -19.41313 -18.98570 -18.67240 -18.24042 -17.22207 -16.83304 -16.20497 -15.97686 -15.86439 -15.71168 -15.53799 -15.10253 -14.98766 -14.51064 -14.42539 -13.78996 -13.56412 -13.07436 -12.88060 -12.80064 -12.58266 -12.54087 -12.49043 -12.30405 -12.19230 -11.95506 -11.82388 -11.76509 -11.45068 -10.60909 -10.58300 -10.27872 -9.08684 -8.92337 -8.15685 -6.34222 -0.13148 0.10962 1.35837 1.37691 1.49663 1.91336 2.37793 2.39221 2.74608 3.09694 3.14939 3.31619 3.39964 3.60174 3.99025 4.12553 4.17483 4.33942 4.38458 4.40316 4.43374 4.44751 4.49799 4.66851 4.74450 4.85766 4.99199 5.05769 5.12081 5.20639 5.22617 5.33552 5.59345 5.72276 5.78590 6.02862 6.16618 6.23386 6.34086 6.45227 6.79574 6.85535 7.37022 8.87434 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.025862 B = 0.004495 C = 0.004133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.420980 B = 6228.081929 C = 6773.074944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.308 6.308 3 C 0.248 3.752 4 N -0.489 5.489 5 C 0.059 3.941 6 C 0.038 3.962 7 N -0.467 5.467 8 C 0.241 3.759 9 N -0.474 5.474 10 C 0.075 3.925 11 C 0.070 3.930 12 N -0.543 5.543 13 C 0.200 3.800 14 C -0.554 4.554 15 H 0.054 0.946 16 C 0.015 3.985 17 N -0.925 5.925 18 Si 0.956 3.044 19 H -0.271 1.271 20 H -0.277 1.277 21 H -0.276 1.276 22 C 0.063 3.937 23 C 0.088 3.912 24 H 0.063 0.937 25 H 0.059 0.941 26 H 0.117 0.883 27 H 0.214 0.786 28 H 0.210 0.790 29 H 0.045 0.955 30 H 0.105 0.895 31 H 0.030 0.970 32 H 0.075 0.925 33 H 0.007 0.993 34 H 0.011 0.989 35 H 0.265 0.735 36 H 0.025 0.975 37 H 0.076 0.924 38 H 0.089 0.911 39 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.584 18.200 -0.761 23.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.214 6.214 3 C 0.062 3.938 4 N -0.218 5.218 5 C -0.099 4.099 6 C -0.120 4.120 7 N -0.188 5.188 8 C 0.004 3.996 9 N -0.193 5.193 10 C -0.051 4.051 11 C -0.058 4.058 12 N -0.267 5.267 13 C 0.073 3.927 14 C -0.593 4.593 15 H 0.072 0.928 16 C -0.185 4.185 17 N -0.565 5.565 18 Si 0.781 3.219 19 H -0.195 1.195 20 H -0.203 1.203 21 H -0.202 1.202 22 C -0.066 4.066 23 C -0.039 4.039 24 H 0.082 0.918 25 H 0.078 0.922 26 H 0.135 0.865 27 H 0.231 0.769 28 H 0.227 0.773 29 H 0.063 0.937 30 H 0.123 0.877 31 H 0.048 0.952 32 H 0.093 0.907 33 H 0.025 0.975 34 H 0.030 0.970 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.094 0.906 38 H 0.107 0.893 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -14.357 17.694 -0.693 22.796 hybrid contribution -0.020 -0.973 -0.852 1.293 sum -14.377 16.721 -1.546 22.106 Atomic orbital electron populations 1.23117 0.75895 1.04686 1.02447 1.86385 1.24260 1.23269 1.87467 1.20346 0.88837 0.86633 0.97961 1.68091 1.39607 0.98801 1.15315 1.24005 0.94135 0.95455 0.96266 1.24107 0.92685 0.97757 0.97487 1.68462 1.39783 0.97781 1.12801 1.20066 0.88594 0.90259 1.00698 1.59208 1.06631 1.12066 1.41358 1.22326 1.01187 0.92527 0.89055 1.21900 0.88021 0.95124 1.00800 1.62664 1.04753 1.18098 1.41142 1.19417 0.92127 0.85935 0.95174 1.21973 1.27614 1.02062 1.07667 0.92781 1.25762 0.94707 0.98858 0.99164 1.70062 1.31464 1.18827 1.36131 0.85542 0.78142 0.78621 0.79595 1.19536 1.20301 1.20192 1.22022 0.99152 0.92740 0.92659 1.21949 0.83828 0.95899 1.02194 0.91846 0.92227 0.86462 0.76942 0.77335 0.93685 0.87670 0.95173 0.90697 0.97482 0.97046 0.92574 0.95682 0.90610 0.89255 0.92899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.62 10.40 113.37 1.18 1.80 16 2 O -0.31 -8.44 7.79 -90.79 -0.71 -9.15 16 3 C 0.25 6.93 7.24 85.05 0.62 7.54 16 4 N -0.49 -11.18 9.39 -307.77 -2.89 -14.07 16 5 C 0.06 0.95 11.20 84.54 0.95 1.90 16 6 C 0.04 0.67 11.20 84.54 0.95 1.62 16 7 N -0.47 -12.45 8.90 -192.18 -1.71 -14.16 16 8 C 0.24 7.33 6.42 133.18 0.85 8.18 16 9 N -0.47 -16.31 4.66 -700.29 -3.26 -19.58 16 10 C 0.07 2.55 5.28 86.31 0.46 3.01 16 11 C 0.07 2.88 5.24 86.31 0.45 3.33 16 12 N -0.54 -24.25 4.92 -900.29 -4.43 -28.68 16 13 C 0.20 10.71 5.14 85.56 0.44 11.15 16 14 C -0.55 -31.24 7.66 25.60 0.20 -31.04 16 15 H 0.05 3.07 5.82 -2.91 -0.02 3.05 16 16 C 0.01 0.83 5.46 84.66 0.46 1.29 16 17 N -0.93 -55.31 13.29 21.45 0.28 -55.02 16 18 Si 0.96 44.66 29.54 68.60 2.03 46.69 16 19 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 21 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 22 C 0.06 2.57 5.32 86.31 0.46 3.03 16 23 C 0.09 3.03 4.80 86.31 0.41 3.45 16 24 H 0.06 1.09 8.11 -2.39 -0.02 1.07 16 25 H 0.06 1.07 8.11 -2.39 -0.02 1.05 16 26 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 27 H 0.21 1.36 8.06 -2.91 -0.02 1.33 16 28 H 0.21 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.11 3.33 5.51 -2.39 -0.01 3.32 16 31 H 0.03 1.37 6.62 -2.39 -0.02 1.36 16 32 H 0.07 3.01 8.14 -2.39 -0.02 2.99 16 33 H 0.01 0.40 8.12 -2.39 -0.02 0.38 16 34 H 0.01 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 36 H 0.02 1.13 6.78 -2.39 -0.02 1.12 16 37 H 0.08 3.01 8.12 -2.39 -0.02 2.99 16 38 H 0.09 2.88 7.84 -2.39 -0.02 2.86 16 39 H 0.05 1.81 8.06 -2.39 -0.02 1.79 16 Total: -1.00 -68.96 315.23 -2.22 -71.18 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.05 Total: 7.54 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 7.42 Total: 15.25 kcal Atomic # 7 Polarization: -119.50 SS G_CDS: -12.01 Total: -131.51 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: -0.71 Total: -9.15 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -68.96 -2.22 -71.18 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165056274.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.828 kcal (2) G-P(sol) polarization free energy of solvation -68.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds