Wall clock time and date at job start Wed Apr 15 2020 11:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36879 * 120.00216 * 2 1 4 4 H 1.08003 * 120.00554 * 204.07198 * 3 2 1 5 5 C 1.38792 * 119.99780 * 24.08083 * 3 2 1 6 6 N 1.31583 * 120.00075 * 10.48976 * 5 3 2 7 7 Si 1.86805 * 120.00309 * 190.49223 * 5 3 2 8 8 H 1.48500 * 109.47174 * 89.99429 * 7 5 3 9 9 H 1.48499 * 109.47469 * 209.99943 * 7 5 3 10 10 H 1.48505 * 109.46790 * 329.99728 * 7 5 3 11 11 C 1.39011 * 119.99848 * 180.02562 * 2 1 3 12 12 C 1.39682 * 120.10297 * 184.97430 * 11 2 1 13 13 C 1.38373 * 117.95357 * 179.77278 * 12 11 2 14 14 C 1.39428 * 117.99096 * 0.48202 * 13 12 11 15 15 O 1.35750 * 120.04042 * 179.78608 * 14 13 12 16 16 C 1.42905 * 116.99571 * 179.72480 * 15 14 13 17 17 C 1.53112 * 109.52282 * 90.12680 * 16 15 14 18 18 C 1.53180 * 109.20529 * 177.56420 * 17 16 15 19 19 N 1.46842 * 109.55424 * 300.85593 * 18 17 16 20 20 C 1.46848 * 111.20038 * 61.74409 * 19 18 17 21 21 C 1.53033 * 109.52225 * 298.26058 * 20 19 18 22 22 N 1.32232 * 119.90870 * 359.50979 * 14 13 12 23 23 N 1.28348 * 122.21228 * 0.25090 * 22 14 13 24 24 H 1.08998 * 109.46559 * 273.70351 * 1 2 3 25 25 H 1.08993 * 109.47098 * 33.70607 * 1 2 3 26 26 H 1.09003 * 109.47202 * 153.70738 * 1 2 3 27 27 H 0.97005 * 120.00465 * 180.02562 * 6 5 3 28 28 H 1.08006 * 121.02013 * 0.02562 * 12 11 2 29 29 H 1.07996 * 121.00322 * 180.24637 * 13 12 11 30 30 H 1.09004 * 109.51973 * 329.99424 * 16 15 14 31 31 H 1.08997 * 109.50635 * 297.55940 * 17 16 15 32 32 H 1.08997 * 109.50873 * 57.67930 * 17 16 15 33 33 H 1.09005 * 109.43967 * 180.83112 * 18 17 16 34 34 H 1.08997 * 109.43689 * 60.88051 * 18 17 16 35 35 H 1.00897 * 111.00128 * 185.84637 * 19 18 17 36 36 H 1.09001 * 109.46476 * 178.23941 * 20 19 18 37 37 H 1.08998 * 109.45110 * 58.26558 * 20 19 18 38 38 H 1.09008 * 109.50526 * 299.23601 * 21 20 19 39 39 H 1.09005 * 109.53612 * 179.13821 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1494 1.1854 0.0000 4 1 3.1590 1.2261 -0.3815 5 6 1.5461 2.3350 0.4904 6 7 0.4052 2.2531 1.1409 7 14 2.3535 3.9989 0.2271 8 1 1.8700 4.5875 -1.0476 9 1 2.0051 4.9021 1.3531 10 1 3.8276 3.8295 0.1663 11 6 2.1600 -1.2039 -0.0005 12 6 3.5529 -1.2088 0.1042 13 6 4.1991 -2.4323 0.1040 14 6 3.4208 -3.5834 -0.0111 15 8 4.0120 -4.8054 -0.0202 16 6 3.1522 -5.9411 -0.1349 17 6 2.9553 -6.2865 -1.6135 18 6 2.0827 -7.5404 -1.7261 19 7 2.7321 -8.6557 -1.0255 20 6 2.8892 -8.3646 0.4052 21 6 3.7855 -7.1368 0.5819 22 7 2.1057 -3.4833 -0.1058 23 7 1.5037 -2.3498 -0.1009 24 1 -0.3632 0.0664 1.0255 25 1 -0.3633 0.8549 -0.5702 26 1 -0.3634 -0.9214 -0.4552 27 1 -0.0167 3.0566 1.4834 28 1 4.1081 -0.2860 0.1871 29 1 5.2742 -2.4937 0.1866 30 1 2.1870 -5.7144 0.3180 31 1 2.4661 -5.4543 -2.1196 32 1 3.9243 -6.4751 -2.0754 33 1 1.9522 -7.7984 -2.7772 34 1 1.1091 -7.3464 -1.2762 35 1 2.2238 -9.5159 -1.1658 36 1 3.3444 -9.2212 0.9023 37 1 1.9116 -8.1668 0.8449 38 1 4.7677 -7.3387 0.1545 39 1 3.8898 -6.9114 1.6432 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166801674.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:19 Heat of formation + Delta-G solvation = 17.828600 kcal Electronic energy + Delta-G solvation = -21515.248453 eV Core-core repulsion = 18265.270057 eV Total energy + Delta-G solvation = -3249.978395 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.78721 -40.19869 -38.45575 -37.54164 -34.09655 -33.73516 -32.24425 -31.80911 -30.64252 -28.67190 -26.24070 -25.58824 -24.01824 -23.70795 -23.25424 -20.84543 -19.67645 -19.17250 -18.16907 -18.04950 -17.52954 -16.64043 -16.34539 -15.60668 -15.56273 -15.48900 -15.18438 -15.00637 -14.63056 -14.45027 -14.25950 -13.88927 -13.40406 -13.27795 -13.07721 -12.99554 -12.66144 -12.62614 -12.40835 -12.21435 -12.10821 -12.00514 -11.61088 -11.54036 -11.23927 -10.87617 -10.37617 -10.13128 -9.45285 -8.80883 -8.32418 -5.87866 0.16539 0.58608 1.45120 1.49067 1.57524 2.09691 2.24527 2.77312 2.85166 3.17119 3.25802 3.67346 3.78923 3.82561 3.93209 4.10699 4.19392 4.23829 4.28168 4.39720 4.53491 4.59871 4.68119 4.76564 4.86332 4.88095 4.89012 4.97096 5.02297 5.08134 5.14392 5.27663 5.30092 5.34731 5.39001 5.92041 5.98678 6.44652 6.51284 6.58184 7.22176 7.46482 8.26595 8.65613 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.043150 B = 0.003536 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.743123 B = 7917.297840 C = 8225.033036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.145 3.855 2 N -0.435 5.435 3 C -0.336 4.336 4 H 0.108 0.892 5 C -0.010 4.010 6 N -0.899 5.899 7 Si 1.001 2.999 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.255 1.255 11 C 0.271 3.729 12 C -0.156 4.156 13 C -0.084 4.084 14 C 0.150 3.850 15 O -0.309 6.309 16 C 0.086 3.914 17 C -0.127 4.127 18 C 0.067 3.933 19 N -0.692 5.692 20 C 0.065 3.935 21 C -0.109 4.109 22 N -0.274 5.274 23 N -0.349 5.349 24 H 0.037 0.963 25 H 0.051 0.949 26 H 0.048 0.952 27 H 0.273 0.727 28 H 0.158 0.842 29 H 0.175 0.825 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.029 0.971 35 H 0.358 0.642 36 H 0.105 0.895 37 H 0.032 0.968 38 H 0.080 0.920 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.042 -14.302 -2.389 15.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.001 3.999 2 N -0.130 5.130 3 C -0.465 4.465 4 H 0.125 0.875 5 C -0.212 4.212 6 N -0.535 5.535 7 Si 0.824 3.176 8 H -0.198 1.198 9 H -0.208 1.208 10 H -0.179 1.179 11 C 0.025 3.975 12 C -0.190 4.190 13 C -0.112 4.112 14 C -0.044 4.044 15 O -0.216 6.216 16 C 0.030 3.970 17 C -0.166 4.166 18 C -0.063 4.063 19 N -0.325 5.325 20 C -0.065 4.065 21 C -0.147 4.147 22 N -0.127 5.127 23 N -0.208 5.208 24 H 0.056 0.944 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.083 0.917 28 H 0.176 0.824 29 H 0.192 0.808 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.110 0.890 34 H 0.047 0.953 35 H 0.178 0.822 36 H 0.123 0.877 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 5.217 -14.575 -2.566 15.691 hybrid contribution 0.051 1.705 0.465 1.768 sum 5.268 -12.869 -2.102 14.063 Atomic orbital electron populations 1.21139 0.79691 0.98758 1.00323 1.42452 1.05167 1.01021 1.64336 1.19989 1.01496 0.84430 1.40567 0.87482 1.26337 0.97050 1.03604 0.94243 1.70219 1.18477 1.30877 1.33976 0.84791 0.79077 0.75998 0.77733 1.19833 1.20815 1.17851 1.20366 0.91072 0.88468 0.97546 1.21787 0.92963 0.99441 1.04858 1.21440 1.02247 0.88625 0.98863 1.21022 0.90790 0.87253 1.05305 1.86149 1.35111 1.11072 1.89219 1.22427 0.93778 0.83927 0.96902 1.21956 1.01239 0.97629 0.95755 1.21814 0.94288 0.90179 0.99974 1.60268 1.55706 1.05674 1.10879 1.21896 0.98075 0.97642 0.88861 1.21685 1.00503 0.92119 1.00422 1.72313 1.08410 1.18366 1.13597 1.72543 1.29792 0.93105 1.25351 0.94411 0.93030 0.93347 0.91718 0.82448 0.80767 0.92117 0.93165 0.90802 0.88950 0.95286 0.82177 0.87671 0.95015 0.90180 0.90513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 7.24 8.79 127.77 1.12 8.36 16 2 N -0.43 -22.29 3.12 -540.74 -1.69 -23.97 16 3 C -0.34 -16.87 8.93 84.04 0.75 -16.12 16 4 H 0.11 4.97 6.38 -2.91 -0.02 4.96 16 5 C -0.01 -0.47 5.14 84.86 0.44 -0.03 16 6 N -0.90 -47.00 10.64 21.65 0.23 -46.77 16 7 Si 1.00 38.45 29.57 68.60 2.03 40.48 16 8 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 9 H -0.28 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.25 -9.16 7.11 99.48 0.71 -8.46 16 11 C 0.27 13.12 7.42 133.18 0.99 14.11 16 12 C -0.16 -6.45 9.34 22.65 0.21 -6.24 16 13 C -0.08 -3.04 10.15 22.59 0.23 -2.81 16 14 C 0.15 5.94 7.54 84.92 0.64 6.58 16 15 O -0.31 -10.74 9.78 -90.76 -0.89 -11.63 16 16 C 0.09 2.57 2.45 30.67 0.08 2.65 16 17 C -0.13 -3.48 5.73 30.69 0.18 -3.30 16 18 C 0.07 1.41 6.55 86.37 0.57 1.98 16 19 N -0.69 -12.25 6.85 -513.76 -3.52 -15.77 16 20 C 0.06 1.14 6.55 86.32 0.57 1.70 16 21 C -0.11 -2.47 5.75 30.65 0.18 -2.29 16 22 N -0.27 -12.20 9.82 -170.16 -1.67 -13.87 16 23 N -0.35 -17.06 10.20 -55.02 -0.56 -17.62 16 24 H 0.04 1.99 7.41 -2.39 -0.02 1.98 16 25 H 0.05 2.60 7.25 -2.39 -0.02 2.58 16 26 H 0.05 2.30 7.21 -2.39 -0.02 2.29 16 27 H 0.27 13.45 8.31 -92.70 -0.77 12.68 16 28 H 0.16 6.00 6.40 -2.91 -0.02 5.98 16 29 H 0.17 4.86 8.06 -2.91 -0.02 4.84 16 30 H 0.06 2.07 7.00 -2.38 -0.02 2.06 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 33 H 0.09 1.66 8.14 -2.38 -0.02 1.64 16 34 H 0.03 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.36 4.54 8.90 -89.70 -0.80 3.74 16 36 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 39 H 0.08 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -60.68 317.69 0.14 -60.54 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.27 Total: 24.03 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: 5.94 Total: 4.58 kcal Atomic # 7 Polarization: -110.81 SS G_CDS: -7.21 Total: -118.01 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: -0.89 Total: -11.63 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Total: -60.68 0.14 -60.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166801674.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.365 kcal (2) G-P(sol) polarization free energy of solvation -60.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds