Wall clock time and date at job start Wed Apr 15 2020 11:43:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34783 * 120.00090 * 2 1 4 4 O 1.21607 * 119.99734 * 183.35702 * 3 2 1 5 5 C 1.47402 * 119.99713 * 3.35449 * 3 2 1 6 6 N 1.31612 * 125.86934 * 353.50575 * 5 3 2 7 7 C 1.33099 * 109.10013 * 179.97438 * 6 5 3 8 8 C 1.35566 * 108.34535 * 359.73816 * 7 6 5 9 9 N 1.35398 * 107.16482 * 0.42024 * 8 7 6 10 10 H 0.96998 * 126.44445 * 179.84900 * 9 8 7 11 11 C 1.46497 * 119.99956 * 180.02562 * 2 1 3 12 12 H 1.09005 * 109.47091 * 179.97438 * 11 2 1 13 13 C 1.52990 * 109.47275 * 299.99727 * 11 2 1 14 14 N 1.46499 * 109.47366 * 305.00092 * 13 11 2 15 15 C 1.36939 * 120.00180 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00298 * 359.97438 * 15 14 13 17 17 C 1.38806 * 119.99971 * 180.02562 * 15 14 13 18 18 N 1.31620 * 120.00074 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 120.00148 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46835 * 89.99524 * 19 17 15 21 21 H 1.48495 * 109.46967 * 209.99799 * 19 17 15 22 22 H 1.48490 * 109.46859 * 329.99823 * 19 17 15 23 23 C 1.53005 * 109.47130 * 60.00022 * 11 2 1 24 24 C 1.53004 * 117.49787 * 128.74649 * 23 11 2 25 25 C 1.52997 * 117.49903 * 60.08663 * 23 11 2 26 26 H 1.09003 * 109.47395 * 84.09297 * 1 2 3 27 27 H 1.08998 * 109.47188 * 204.09694 * 1 2 3 28 28 H 1.09004 * 109.46891 * 324.09807 * 1 2 3 29 29 H 1.07993 * 125.82772 * 180.02562 * 7 6 5 30 30 H 1.08002 * 126.42172 * 180.30383 * 8 7 6 31 31 H 1.09000 * 109.47175 * 65.00335 * 13 11 2 32 32 H 1.09006 * 109.47494 * 184.99798 * 13 11 2 33 33 H 0.96998 * 119.99610 * 0.02562 * 14 13 11 34 34 H 0.97005 * 119.99865 * 180.02562 * 18 17 15 35 35 H 1.09001 * 115.55022 * 274.41563 * 23 11 2 36 36 H 1.08994 * 117.50123 * 0.02562 * 24 23 11 37 37 H 1.08998 * 117.49305 * 145.02084 * 24 23 11 38 38 H 1.09004 * 117.49946 * 214.97673 * 25 23 11 39 39 H 1.09004 * 117.50107 * 0.02562 * 25 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3534 1.1681 -0.0617 5 6 1.4037 2.4427 0.0747 6 7 0.0961 2.5831 0.0244 7 6 -0.2072 3.8754 0.1217 8 6 0.9467 4.5765 0.2434 9 7 1.9630 3.6825 0.2087 10 1 2.9098 3.8837 0.2714 11 6 2.1974 -1.2687 -0.0006 12 1 3.2691 -1.0695 -0.0009 13 6 1.8279 -2.0715 1.2483 14 7 2.0707 -1.2574 2.4418 15 6 1.8104 -1.7698 3.6847 16 1 1.4257 -2.7739 3.7852 17 6 2.0400 -0.9982 4.8155 18 7 2.5083 0.2258 4.6931 19 14 1.6842 -1.6969 6.5111 20 1 2.8981 -2.3756 7.0314 21 1 1.3007 -0.5951 7.4299 22 1 0.5709 -2.6752 6.4196 23 6 1.8278 -2.0705 -1.2502 24 6 2.9740 -2.6050 -2.1113 25 6 2.1227 -1.4348 -2.6103 26 1 -0.3634 0.1058 -1.0222 27 1 -0.3633 -0.9381 0.4196 28 1 -0.3633 0.8325 0.6026 29 1 -1.2028 4.2937 0.1107 30 1 1.0384 5.6477 0.3467 31 1 0.7742 -2.3470 1.2045 32 1 2.4377 -2.9739 1.2938 33 1 2.4152 -0.3552 2.3515 34 1 2.6691 0.7648 5.4834 35 1 0.9322 -2.6861 -1.1660 36 1 3.9914 -2.3858 -1.7874 37 1 2.8323 -3.5720 -2.5938 38 1 1.4213 -1.6325 -3.4209 39 1 2.5804 -0.4455 -2.6148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331284822.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:21 Heat of formation + Delta-G solvation = 57.352078 kcal Electronic energy + Delta-G solvation = -22325.123609 eV Core-core repulsion = 19076.859081 eV Total energy + Delta-G solvation = -3248.264529 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.148 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.19128 -40.93358 -38.61688 -36.67652 -35.79439 -33.73130 -33.16461 -31.05509 -29.60665 -27.76559 -26.13591 -24.59447 -23.24679 -22.98342 -22.44209 -21.66721 -20.62382 -19.19764 -19.06385 -17.89379 -17.11743 -16.91485 -16.61871 -16.15097 -15.60407 -15.33552 -15.17399 -15.01774 -14.74084 -14.55490 -14.47830 -13.96368 -13.50512 -13.23455 -13.17224 -12.80529 -12.66698 -12.40760 -12.21864 -12.10176 -11.82936 -11.55806 -11.28780 -11.16971 -11.07509 -10.96028 -10.78319 -9.72814 -9.40857 -9.01565 -7.94684 -5.24640 0.38658 1.44610 1.47252 1.50481 1.55721 1.72666 2.39539 2.42526 2.54722 3.00870 3.25757 3.38441 3.51755 3.94137 4.00509 4.08908 4.14037 4.27751 4.38848 4.43870 4.48548 4.49835 4.57649 4.77993 4.86806 4.91643 4.95548 5.02601 5.08210 5.23253 5.27385 5.30393 5.46291 5.53544 5.78567 6.18960 6.24483 6.30679 6.78165 7.08099 7.31068 8.05938 8.30017 9.28655 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.012195 B = 0.007145 C = 0.005034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.534560 B = 3917.703284 C = 5560.328828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.564 5.564 3 C 0.593 3.407 4 O -0.587 6.587 5 C 0.112 3.888 6 N -0.447 5.447 7 C -0.055 4.055 8 C 0.000 4.000 9 N -0.522 5.522 10 H 0.434 0.566 11 C 0.170 3.830 12 H 0.071 0.929 13 C 0.146 3.854 14 N -0.741 5.741 15 C -0.242 4.242 16 H 0.081 0.919 17 C -0.079 4.079 18 N -0.971 5.971 19 Si 0.977 3.023 20 H -0.288 1.288 21 H -0.297 1.297 22 H -0.265 1.265 23 C -0.165 4.165 24 C -0.160 4.160 25 C -0.162 4.162 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.207 0.793 30 H 0.233 0.767 31 H 0.038 0.962 32 H 0.037 0.963 33 H 0.369 0.631 34 H 0.248 0.752 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.585 4.696 -15.316 16.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.293 5.293 3 C 0.381 3.619 4 O -0.468 6.468 5 C -0.147 4.147 6 N -0.171 5.171 7 C -0.208 4.208 8 C -0.140 4.140 9 N -0.124 5.124 10 H 0.274 0.726 11 C 0.067 3.933 12 H 0.089 0.911 13 C 0.019 3.981 14 N -0.383 5.383 15 C -0.374 4.374 16 H 0.098 0.902 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.806 3.194 20 H -0.215 1.215 21 H -0.224 1.224 22 H -0.190 1.190 23 C -0.185 4.185 24 C -0.197 4.197 25 C -0.199 4.199 26 H 0.089 0.911 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.224 0.776 30 H 0.250 0.750 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.201 0.799 34 H 0.057 0.943 35 H 0.145 0.855 36 H 0.101 0.899 37 H 0.141 0.859 38 H 0.136 0.864 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.580 3.808 -15.325 16.748 hybrid contribution 1.207 0.996 1.413 2.109 sum -4.373 4.803 -13.912 15.353 Atomic orbital electron populations 1.22143 0.77024 1.03743 1.02752 1.47362 1.08553 1.04023 1.69356 1.16897 0.85563 0.82890 0.76571 1.90755 1.14280 1.87539 1.54253 1.22335 0.89781 0.87459 1.15137 1.70318 1.09654 1.21037 1.16083 1.23250 1.00795 0.88404 1.08356 1.23790 0.86659 0.98425 1.05147 1.43062 1.11679 1.06116 1.51567 0.72562 1.20833 0.96106 0.82194 0.94214 0.91067 1.21143 0.98519 0.93347 0.85089 1.42483 1.78754 1.15562 1.01536 1.19668 1.34723 0.98274 0.84711 0.90161 1.25625 1.02880 0.96739 1.01799 1.69883 1.53140 1.10311 1.28816 0.85086 0.77928 0.76921 0.79493 1.21531 1.22362 1.19005 1.22462 1.02192 1.03571 0.90241 1.23078 0.95133 0.99236 1.02281 1.22816 1.03631 0.96916 0.96508 0.91076 0.91499 0.89259 0.77577 0.75026 0.94437 0.94552 0.79933 0.94326 0.85498 0.89859 0.85870 0.86429 0.91371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.80 8.93 127.77 1.14 3.94 16 2 N -0.56 -21.07 2.12 -826.50 -1.76 -22.82 16 3 C 0.59 24.30 7.37 86.66 0.64 24.94 16 4 O -0.59 -27.06 16.43 -4.05 -0.07 -27.13 16 5 C 0.11 3.96 7.67 136.27 1.04 5.01 16 6 N -0.45 -14.34 7.69 -189.53 -1.46 -15.80 16 7 C -0.06 -1.31 11.85 83.88 0.99 -0.32 16 8 C 0.00 -0.01 12.00 83.52 1.00 0.99 16 9 N -0.52 -14.39 6.15 -188.02 -1.16 -15.54 16 10 H 0.43 10.67 8.96 -92.71 -0.83 9.84 16 11 C 0.17 6.23 2.37 44.99 0.11 6.33 16 12 H 0.07 3.04 6.66 -2.38 -0.02 3.02 16 13 C 0.15 6.12 5.50 86.38 0.48 6.59 16 14 N -0.74 -40.07 5.43 -343.47 -1.87 -41.93 16 15 C -0.24 -14.02 9.99 84.03 0.84 -13.18 16 16 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 17 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 18 N -0.97 -62.42 13.06 21.65 0.28 -62.14 16 19 Si 0.98 47.61 29.55 68.60 2.03 49.64 16 20 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 21 H -0.30 -14.56 7.11 99.48 0.71 -13.86 16 22 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 23 C -0.17 -4.45 4.83 -10.79 -0.05 -4.50 16 24 C -0.16 -3.70 10.18 30.62 0.31 -3.39 16 25 C -0.16 -3.89 10.13 30.62 0.31 -3.58 16 26 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 27 H 0.07 2.14 6.54 -2.39 -0.02 2.13 16 28 H 0.09 3.26 5.34 -2.39 -0.01 3.25 16 29 H 0.21 3.31 8.06 -2.91 -0.02 3.28 16 30 H 0.23 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.04 1.49 6.87 -2.39 -0.02 1.47 16 32 H 0.04 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.37 22.11 7.06 -92.71 -0.65 21.46 16 34 H 0.25 15.45 8.31 -92.70 -0.77 14.68 16 35 H 0.13 2.97 8.11 -2.39 -0.02 2.95 16 36 H 0.08 2.14 8.05 -2.39 -0.02 2.13 16 37 H 0.12 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.12 2.22 8.14 -2.38 -0.02 2.20 16 39 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -77.96 328.65 2.89 -75.07 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: -0.40 Total: 42.03 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.28 Total: 18.62 kcal Atomic # 7 Polarization: -152.28 SS G_CDS: -5.95 Total: -158.24 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.07 Total: -27.13 kcal Atomic # 14 Polarization: 47.61 SS G_CDS: 2.03 Total: 49.64 kcal Total: -77.96 2.89 -75.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331284822.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.424 kcal (2) G-P(sol) polarization free energy of solvation -77.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds