Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99971 * 2 1 4 4 H 1.48492 * 109.47420 * 270.00074 * 3 2 1 5 5 H 1.48501 * 109.47288 * 30.00077 * 3 2 1 6 6 H 1.48500 * 109.47017 * 149.99778 * 3 2 1 7 7 C 1.37876 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99078 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00609 * 180.27975 * 7 2 1 10 10 N 1.46892 * 109.47275 * 179.72489 * 9 7 2 11 11 C 1.46899 * 111.00286 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47683 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.27310 * 54.29472 * 12 11 10 14 14 C 1.54589 * 110.30787 * 292.20986 * 12 11 10 15 15 C 1.55105 * 102.84483 * 219.18445 * 14 12 11 16 16 N 1.48534 * 103.28293 * 37.30384 * 15 14 12 17 17 C 1.39849 * 110.99551 * 200.33484 * 16 15 14 18 18 C 1.38823 * 120.08250 * 352.00418 * 17 16 15 19 19 C 1.38150 * 119.94849 * 179.70014 * 18 17 16 20 20 C 1.38276 * 120.11172 * 0.57520 * 19 18 17 21 21 C 1.38291 * 120.15958 * 359.72037 * 20 19 18 22 22 C 1.38280 * 120.04686 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.05322 * 180.02562 * 22 21 20 24 24 C 1.47907 * 105.82076 * 320.84838 * 16 15 14 25 25 H 0.97007 * 120.00216 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46438 * 299.72018 * 9 7 2 27 27 H 1.09001 * 109.47339 * 59.71774 * 9 7 2 28 28 H 1.00903 * 111.00665 * 56.04463 * 10 9 7 29 29 H 1.09000 * 109.46598 * 299.99707 * 11 10 9 30 30 H 1.08999 * 109.47511 * 59.99148 * 11 10 9 31 31 H 1.09007 * 110.72553 * 337.48142 * 14 12 11 32 32 H 1.09000 * 110.72513 * 100.76352 * 14 12 11 33 33 H 1.08999 * 110.58763 * 278.87318 * 15 14 12 34 34 H 1.08998 * 110.82612 * 155.84602 * 15 14 12 35 35 H 1.08000 * 120.02790 * 359.96689 * 18 17 16 36 36 H 1.07999 * 119.94849 * 180.30983 * 19 18 17 37 37 H 1.07997 * 119.92251 * 179.74703 * 20 19 18 38 38 H 1.07999 * 119.97203 * 180.02562 * 21 20 19 39 39 H 1.09006 * 109.91492 * 265.97633 * 24 16 15 40 40 H 1.08995 * 110.07812 * 144.77837 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0058 10 7 4.0012 -2.5789 0.0106 11 6 5.4696 -2.6182 0.0175 12 6 5.9410 -4.0738 0.0229 13 1 5.4935 -4.6188 -0.8083 14 6 5.5787 -4.7501 1.3649 15 6 6.8245 -5.6269 1.6566 16 7 7.9526 -4.7859 1.1809 17 6 9.0893 -5.5634 0.9374 18 6 9.1076 -6.9025 1.3027 19 6 10.2297 -7.6696 1.0552 20 6 11.3389 -7.1028 0.4550 21 6 11.3279 -5.7676 0.0948 22 6 10.2060 -4.9953 0.3337 23 9 10.1949 -3.6911 -0.0186 24 6 7.4772 -4.1384 -0.0610 25 1 -0.4851 0.8401 -0.0004 26 1 3.8785 -0.6819 -0.8837 27 1 3.8712 -0.6784 0.8963 28 1 3.6290 -3.0968 -0.7714 29 1 5.8506 -2.1158 -0.8717 30 1 5.8425 -2.1126 0.9082 31 1 5.4405 -4.0043 2.1478 32 1 4.6870 -5.3677 1.2573 33 1 6.7766 -6.5598 1.0949 34 1 6.9167 -5.8262 2.7242 35 1 8.2439 -7.3455 1.7761 36 1 10.2421 -8.7127 1.3348 37 1 12.2159 -7.7042 0.2666 38 1 12.1958 -5.3281 -0.3742 39 1 7.7774 -4.7294 -0.9263 40 1 7.8876 -3.1316 -0.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580641171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = -8.122204 kcal Electronic energy + Delta-G solvation = -21066.384249 eV Core-core repulsion = 17795.360580 eV Total energy + Delta-G solvation = -3271.023668 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.96098 -40.38567 -38.19359 -35.61254 -33.13319 -31.95787 -31.01549 -29.58814 -28.79279 -27.04859 -23.86957 -23.64654 -22.21942 -21.18170 -20.94001 -19.96522 -18.08849 -16.91595 -16.85462 -16.38350 -15.97449 -15.38967 -15.22931 -14.74268 -14.58914 -14.26015 -13.89888 -13.68380 -13.55955 -13.27302 -12.75746 -12.43908 -12.32996 -12.28335 -12.00085 -11.83193 -11.44856 -11.33509 -11.16953 -10.90390 -10.66371 -10.47323 -10.21999 -9.95525 -9.76230 -9.27875 -9.12492 -8.60039 -8.10613 -7.48870 -6.06145 -4.04094 0.90747 0.93640 3.24257 3.28919 3.36576 3.39999 3.63940 4.08065 4.34204 4.42339 4.52371 4.59821 4.69562 4.82907 4.95885 5.02427 5.11019 5.23713 5.27631 5.35742 5.46422 5.51637 5.62237 5.68474 5.75123 5.81898 5.89140 5.91245 6.06657 6.10816 6.14170 6.33637 6.38678 6.43008 6.68581 6.78672 6.98492 7.01928 7.60936 7.88325 8.32475 8.64579 9.01581 9.56003 11.07120 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.038229 B = 0.003153 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.256161 B = 8879.229679 C = 9429.118753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.516 4.516 8 H 0.079 0.921 9 C 0.164 3.836 10 N -0.678 5.678 11 C 0.066 3.934 12 C -0.094 4.094 13 H 0.076 0.924 14 C -0.103 4.103 15 C 0.028 3.972 16 N -0.467 5.467 17 C 0.079 3.921 18 C -0.145 4.145 19 C -0.104 4.104 20 C -0.124 4.124 21 C -0.132 4.132 22 C 0.074 3.926 23 F -0.134 7.134 24 C 0.045 3.955 25 H 0.264 0.736 26 H -0.021 1.021 27 H 0.026 0.974 28 H 0.333 0.667 29 H 0.019 0.981 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.138 0.862 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.135 0.865 39 H 0.050 0.950 40 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.590 -15.875 0.822 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.211 1.211 6 H -0.191 1.191 7 C -0.554 4.554 8 H 0.097 0.903 9 C 0.036 3.964 10 N -0.308 5.308 11 C -0.064 4.064 12 C -0.113 4.113 13 H 0.095 0.905 14 C -0.141 4.141 15 C -0.098 4.098 16 N -0.181 5.181 17 C -0.021 4.021 18 C -0.165 4.165 19 C -0.123 4.123 20 C -0.143 4.143 21 C -0.151 4.151 22 C 0.052 3.948 23 F -0.113 7.113 24 C -0.081 4.081 25 H 0.074 0.926 26 H -0.004 1.004 27 H 0.044 0.956 28 H 0.150 0.850 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.099 0.901 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.156 0.844 36 H 0.146 0.854 37 H 0.147 0.853 38 H 0.153 0.847 39 H 0.068 0.932 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 22.438 -15.300 1.889 27.224 hybrid contribution 0.506 0.981 -1.476 1.843 sum 22.944 -14.319 0.414 27.049 Atomic orbital electron populations 1.69899 1.06165 1.26892 1.51016 1.24908 0.94756 0.98980 0.94720 0.86817 0.80368 0.83827 0.78450 1.20364 1.21142 1.19130 1.21062 0.88957 0.94789 1.50589 0.90309 1.19999 0.96596 0.85010 0.94757 1.60466 1.04466 1.16643 1.49271 1.22002 0.90711 0.93665 1.00036 1.22024 0.92713 0.97838 0.98766 0.90512 1.22473 0.95789 0.98609 0.97259 1.23589 0.89827 0.95281 1.01140 1.61783 1.03271 1.26178 1.26855 1.19262 0.92838 0.91882 0.98116 1.21219 1.00044 0.91538 1.03737 1.21078 0.92866 1.00022 0.98362 1.20918 0.99015 0.94193 1.00174 1.21053 0.97254 0.94716 1.02101 1.17356 0.94987 0.79161 1.03307 1.91496 1.96778 1.32992 1.90005 1.23051 0.95620 1.00572 0.88828 0.92646 1.00368 0.95566 0.84962 0.96274 0.91230 0.89734 0.90090 0.92397 0.89395 0.84438 0.85376 0.85258 0.84745 0.93156 0.89152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.85 13.96 55.43 0.77 -27.08 16 2 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 3 Si 0.88 21.87 27.47 -169.99 -4.67 17.20 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.44 6.54 56.52 0.37 -6.07 16 7 C -0.52 -14.85 9.87 -34.44 -0.34 -15.19 16 8 H 0.08 2.44 8.06 -52.49 -0.42 2.02 16 9 C 0.16 4.03 4.51 -4.98 -0.02 4.00 16 10 N -0.68 -13.81 6.32 -115.06 -0.73 -14.54 16 11 C 0.07 1.10 4.77 -3.82 -0.02 1.08 16 12 C -0.09 -1.26 3.17 -89.27 -0.28 -1.55 16 13 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 14 C -0.10 -1.31 6.46 -24.78 -0.16 -1.47 16 15 C 0.03 0.30 5.18 -1.81 -0.01 0.29 16 16 N -0.47 -5.86 5.30 -166.98 -0.88 -6.74 16 17 C 0.08 0.91 5.45 -83.67 -0.46 0.46 16 18 C -0.14 -1.34 8.80 -39.40 -0.35 -1.69 16 19 C -0.10 -0.80 10.04 -39.60 -0.40 -1.20 16 20 C -0.12 -0.94 10.04 -39.55 -0.40 -1.34 16 21 C -0.13 -1.21 10.02 -39.55 -0.40 -1.61 16 22 C 0.07 0.86 6.92 -39.26 -0.27 0.59 16 23 F -0.13 -1.79 15.45 2.25 0.03 -1.75 16 24 C 0.04 0.57 5.08 -2.75 -0.01 0.56 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H -0.02 -0.52 7.58 -51.93 -0.39 -0.91 16 27 H 0.03 0.67 7.19 -51.93 -0.37 0.29 16 28 H 0.33 6.54 8.72 -39.29 -0.34 6.19 16 29 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 1.22 8.03 -51.93 -0.42 0.80 16 31 H 0.08 1.22 7.79 -51.93 -0.40 0.82 16 32 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.54 6.59 -51.93 -0.34 0.20 16 34 H 0.09 0.86 8.13 -51.93 -0.42 0.44 16 35 H 0.14 1.07 5.95 -52.49 -0.31 0.76 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 39 H 0.05 0.62 7.68 -51.93 -0.40 0.22 16 40 H 0.09 1.24 7.01 -51.93 -0.36 0.88 16 LS Contribution 324.66 15.07 4.89 4.89 Total: -1.00 -31.54 324.66 -9.69 -41.23 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -5.90 Total: 1.94 kcal Atomic # 6 Polarization: -11.94 SS G_CDS: -3.21 Total: -15.15 kcal Atomic # 7 Polarization: -47.52 SS G_CDS: -0.84 Total: -48.36 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.03 Total: -1.75 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.67 Total: 17.20 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.54 -9.69 -41.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580641171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.108 kcal (2) G-P(sol) polarization free energy of solvation -31.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds