Wall clock time and date at job start Wed Apr 15 2020 11:43:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99971 * 2 1 4 4 H 1.48492 * 109.47420 * 270.00074 * 3 2 1 5 5 H 1.48501 * 109.47288 * 30.00077 * 3 2 1 6 6 H 1.48500 * 109.47017 * 149.99778 * 3 2 1 7 7 C 1.37876 * 120.00500 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99078 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00609 * 180.27975 * 7 2 1 10 10 N 1.46892 * 109.47275 * 179.72489 * 9 7 2 11 11 C 1.46899 * 111.00286 * 180.02562 * 10 9 7 12 12 C 1.53001 * 109.47683 * 179.97438 * 11 10 9 13 13 H 1.09002 * 110.27310 * 54.29472 * 12 11 10 14 14 C 1.54589 * 110.30787 * 292.20986 * 12 11 10 15 15 C 1.55105 * 102.84483 * 219.18445 * 14 12 11 16 16 N 1.48534 * 103.28293 * 37.30384 * 15 14 12 17 17 C 1.39849 * 110.99551 * 200.33484 * 16 15 14 18 18 C 1.38823 * 120.08250 * 352.00418 * 17 16 15 19 19 C 1.38150 * 119.94849 * 179.70014 * 18 17 16 20 20 C 1.38276 * 120.11172 * 0.57520 * 19 18 17 21 21 C 1.38291 * 120.15958 * 359.72037 * 20 19 18 22 22 C 1.38280 * 120.04686 * 359.97438 * 21 20 19 23 23 F 1.35099 * 120.05322 * 180.02562 * 22 21 20 24 24 C 1.47907 * 105.82076 * 320.84838 * 16 15 14 25 25 H 0.97007 * 120.00216 * 0.02562 * 1 2 3 26 26 H 1.09005 * 109.46438 * 299.72018 * 9 7 2 27 27 H 1.09001 * 109.47339 * 59.71774 * 9 7 2 28 28 H 1.00903 * 111.00665 * 56.04463 * 10 9 7 29 29 H 1.09000 * 109.46598 * 299.99707 * 11 10 9 30 30 H 1.08999 * 109.47511 * 59.99148 * 11 10 9 31 31 H 1.09007 * 110.72553 * 337.48142 * 14 12 11 32 32 H 1.09000 * 110.72513 * 100.76352 * 14 12 11 33 33 H 1.08999 * 110.58763 * 278.87318 * 15 14 12 34 34 H 1.08998 * 110.82612 * 155.84602 * 15 14 12 35 35 H 1.08000 * 120.02790 * 359.96689 * 18 17 16 36 36 H 1.07999 * 119.94849 * 180.30983 * 19 18 17 37 37 H 1.07997 * 119.92251 * 179.74703 * 20 19 18 38 38 H 1.07999 * 119.97203 * 180.02562 * 21 20 19 39 39 H 1.09006 * 109.91492 * 265.97633 * 24 16 15 40 40 H 1.08995 * 110.07812 * 144.77837 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0005 9 6 3.5115 -1.1940 0.0058 10 7 4.0012 -2.5789 0.0106 11 6 5.4696 -2.6182 0.0175 12 6 5.9410 -4.0738 0.0229 13 1 5.4935 -4.6188 -0.8083 14 6 5.5787 -4.7501 1.3649 15 6 6.8245 -5.6269 1.6566 16 7 7.9526 -4.7859 1.1809 17 6 9.0893 -5.5634 0.9374 18 6 9.1076 -6.9025 1.3027 19 6 10.2297 -7.6696 1.0552 20 6 11.3389 -7.1028 0.4550 21 6 11.3279 -5.7676 0.0948 22 6 10.2060 -4.9953 0.3337 23 9 10.1949 -3.6911 -0.0186 24 6 7.4772 -4.1384 -0.0610 25 1 -0.4851 0.8401 -0.0004 26 1 3.8785 -0.6819 -0.8837 27 1 3.8712 -0.6784 0.8963 28 1 3.6290 -3.0968 -0.7714 29 1 5.8506 -2.1158 -0.8717 30 1 5.8425 -2.1126 0.9082 31 1 5.4405 -4.0043 2.1478 32 1 4.6870 -5.3677 1.2573 33 1 6.7766 -6.5598 1.0949 34 1 6.9167 -5.8262 2.7242 35 1 8.2439 -7.3455 1.7761 36 1 10.2421 -8.7127 1.3348 37 1 12.2159 -7.7042 0.2666 38 1 12.1958 -5.3281 -0.3742 39 1 7.7774 -4.7294 -0.9263 40 1 7.8876 -3.1316 -0.1388 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580641171.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:11 Heat of formation + Delta-G solvation = -29.307039 kcal Electronic energy + Delta-G solvation = -21067.302892 eV Core-core repulsion = 17795.360580 eV Total energy + Delta-G solvation = -3271.942312 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.83900 -41.23281 -39.05665 -37.11350 -34.85681 -33.51144 -31.71726 -30.77829 -29.73459 -28.66595 -25.29062 -24.42955 -23.13174 -22.99415 -21.85384 -21.07717 -18.98229 -18.86093 -17.72235 -17.23376 -16.97018 -16.69883 -16.28409 -16.14981 -15.74705 -15.40849 -15.29787 -14.80870 -14.55140 -14.42072 -14.24138 -13.94064 -13.61585 -13.32990 -13.09442 -12.87360 -12.69088 -12.59112 -12.48708 -12.06372 -12.01270 -11.82718 -11.72953 -11.56144 -11.37299 -10.83632 -10.75024 -9.81524 -9.17415 -8.90396 -8.32130 -6.36361 0.20942 0.26017 1.32598 1.34866 1.46073 2.32069 2.54125 2.85413 3.01781 3.26397 3.34013 3.61321 3.67545 3.85560 3.95372 4.10156 4.22432 4.26000 4.38869 4.43469 4.47651 4.49949 4.65107 4.69825 4.76680 4.80626 4.85760 4.98405 5.00191 5.05615 5.09953 5.21592 5.29699 5.36286 5.48888 5.50532 5.73229 5.78463 5.92292 6.20612 6.53078 6.63667 6.74998 7.28755 8.84463 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.038229 B = 0.003153 C = 0.002969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 732.256161 B = 8879.229679 C = 9429.118753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C 0.009 3.991 3 Si 0.949 3.051 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.254 1.254 7 C -0.527 4.527 8 H 0.041 0.959 9 C 0.174 3.826 10 N -0.682 5.682 11 C 0.070 3.930 12 C -0.087 4.087 13 H 0.086 0.914 14 C -0.103 4.103 15 C 0.036 3.964 16 N -0.484 5.484 17 C 0.056 3.944 18 C -0.149 4.149 19 C -0.099 4.099 20 C -0.117 4.117 21 C -0.136 4.136 22 C 0.041 3.959 23 F -0.153 7.153 24 C 0.054 3.946 25 H 0.268 0.732 26 H -0.016 1.016 27 H 0.021 0.979 28 H 0.338 0.662 29 H 0.023 0.977 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.152 0.848 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.148 0.852 39 H 0.055 0.945 40 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.057 -17.225 0.845 30.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.586 5.586 2 C -0.189 4.189 3 Si 0.773 3.227 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.178 1.178 7 C -0.565 4.565 8 H 0.059 0.941 9 C 0.046 3.954 10 N -0.313 5.313 11 C -0.059 4.059 12 C -0.106 4.106 13 H 0.105 0.895 14 C -0.141 4.141 15 C -0.089 4.089 16 N -0.199 5.199 17 C -0.043 4.043 18 C -0.169 4.169 19 C -0.118 4.118 20 C -0.136 4.136 21 C -0.155 4.155 22 C 0.019 3.981 23 F -0.132 7.132 24 C -0.072 4.072 25 H 0.077 0.923 26 H 0.001 0.999 27 H 0.039 0.961 28 H 0.155 0.845 29 H 0.041 0.959 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.117 0.883 35 H 0.170 0.830 36 H 0.178 0.822 37 H 0.179 0.821 38 H 0.166 0.834 39 H 0.073 0.927 40 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 24.930 -16.679 1.911 30.056 hybrid contribution -0.234 1.247 -1.475 1.945 sum 24.696 -15.432 0.437 29.125 Atomic orbital electron populations 1.70042 1.08065 1.28236 1.52282 1.25850 0.95637 1.03197 0.94181 0.85686 0.79272 0.78611 0.79170 1.19087 1.20465 1.17795 1.21327 0.91245 0.93538 1.50405 0.94115 1.19741 0.93817 0.87341 0.94526 1.60341 1.06871 1.14366 1.49687 1.22013 0.88161 0.96097 0.99671 1.21935 0.93397 0.95618 0.99660 0.89545 1.22418 0.97143 0.98498 0.96048 1.23574 0.88075 0.95220 1.02063 1.61782 1.04101 1.27337 1.26681 1.19434 0.92413 0.92900 0.99585 1.21476 1.01318 0.90701 1.03429 1.21499 0.91990 1.01329 0.96946 1.21347 1.00054 0.93602 0.98595 1.21339 0.96904 0.95412 1.01889 1.17785 0.96353 0.78880 1.05061 1.91440 1.96955 1.34348 1.90422 1.22867 0.94604 1.00079 0.89628 0.92297 0.99883 0.96055 0.84492 0.95881 0.92218 0.91907 0.89699 0.90565 0.88324 0.83043 0.82248 0.82123 0.83375 0.92687 0.90690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.66 13.96 21.45 0.30 -59.36 16 2 C 0.01 0.54 5.47 84.66 0.46 1.00 16 3 Si 0.95 45.00 27.47 68.60 1.88 46.88 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.25 -11.44 6.54 99.48 0.65 -10.79 16 7 C -0.53 -30.99 9.87 25.60 0.25 -30.74 16 8 H 0.04 2.63 8.06 -2.91 -0.02 2.61 16 9 C 0.17 8.55 4.51 85.56 0.39 8.94 16 10 N -0.68 -27.91 6.32 -517.95 -3.27 -31.18 16 11 C 0.07 2.33 4.77 86.30 0.41 2.74 16 12 C -0.09 -2.29 3.17 -9.92 -0.03 -2.32 16 13 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 14 C -0.10 -2.56 6.46 31.86 0.21 -2.35 16 15 C 0.04 0.73 5.18 86.71 0.45 1.18 16 16 N -0.48 -11.81 5.30 -682.19 -3.61 -15.43 16 17 C 0.06 1.23 5.45 38.20 0.21 1.44 16 18 C -0.15 -2.38 8.80 22.39 0.20 -2.18 16 19 C -0.10 -1.15 10.04 22.26 0.22 -0.93 16 20 C -0.12 -1.37 10.04 22.29 0.22 -1.15 16 21 C -0.14 -2.25 10.02 22.29 0.22 -2.03 16 22 C 0.04 0.93 6.92 22.48 0.16 1.08 16 23 F -0.15 -4.15 15.45 44.97 0.69 -3.46 16 24 C 0.05 1.37 5.08 86.44 0.44 1.81 16 25 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16 26 H -0.02 -0.79 7.58 -2.38 -0.02 -0.81 16 27 H 0.02 1.07 7.19 -2.39 -0.02 1.05 16 28 H 0.34 13.32 8.72 -89.69 -0.78 12.54 16 29 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 2.10 8.03 -2.39 -0.02 2.08 16 31 H 0.06 1.83 7.79 -2.38 -0.02 1.81 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.08 1.25 6.59 -2.39 -0.02 1.23 16 34 H 0.10 1.76 8.13 -2.39 -0.02 1.74 16 35 H 0.15 1.89 5.95 -2.91 -0.02 1.87 16 36 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 37 H 0.16 0.85 8.06 -2.91 -0.02 0.83 16 38 H 0.15 1.90 8.06 -2.91 -0.02 1.87 16 39 H 0.05 1.32 7.68 -2.38 -0.02 1.30 16 40 H 0.07 2.10 7.01 -2.39 -0.02 2.09 16 Total: -1.00 -69.54 324.66 0.00 -69.54 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 0.20 Total: 16.51 kcal Atomic # 6 Polarization: -27.32 SS G_CDS: 3.81 Total: -23.51 kcal Atomic # 7 Polarization: -99.38 SS G_CDS: -6.59 Total: -105.97 kcal Atomic # 9 Polarization: -4.15 SS G_CDS: 0.69 Total: -3.46 kcal Atomic # 14 Polarization: 45.00 SS G_CDS: 1.88 Total: 46.88 kcal Total: -69.54 0.00 -69.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580641171.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.233 kcal (2) G-P(sol) polarization free energy of solvation -69.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds