Wall clock time and date at job start Wed Apr 15 2020 11:43:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 120.00132 * 2 1 4 4 H 1.48494 * 109.47237 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46695 * 299.99405 * 3 2 1 6 6 H 1.48494 * 109.47363 * 59.99176 * 3 2 1 7 7 C 1.37881 * 119.99826 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99752 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00103 * 0.02562 * 7 2 1 10 10 N 1.46905 * 109.47066 * 179.97438 * 9 7 2 11 11 C 1.46901 * 110.99870 * 180.02562 * 10 9 7 12 12 H 1.08999 * 109.50529 * 35.07487 * 11 10 9 13 13 C 1.53119 * 109.50140 * 275.00100 * 11 10 9 14 14 C 1.53121 * 109.16210 * 182.40809 * 13 11 10 15 15 C 1.53034 * 109.27856 * 57.64846 * 14 13 11 16 16 N 1.46845 * 109.52557 * 300.82568 * 15 14 13 17 17 C 1.39843 * 111.00180 * 185.83860 * 16 15 14 18 18 C 1.38833 * 120.08306 * 296.04612 * 17 16 15 19 19 C 1.38152 * 119.95198 * 180.02562 * 18 17 16 20 20 C 1.38268 * 120.11175 * 359.97438 * 19 18 17 21 21 C 1.38285 * 120.16055 * 359.97438 * 20 19 18 22 22 C 1.38276 * 120.05272 * 359.76462 * 21 20 19 23 23 F 1.35104 * 120.06027 * 180.27388 * 22 21 20 24 24 C 1.46849 * 111.20089 * 61.73959 * 16 15 14 25 25 H 0.96997 * 120.00392 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47558 * 59.99825 * 9 7 2 27 27 H 1.08998 * 109.47216 * 299.99488 * 9 7 2 28 28 H 1.00901 * 110.99869 * 56.04737 * 10 9 7 29 29 H 1.09010 * 109.52253 * 302.30537 * 13 11 10 30 30 H 1.08996 * 109.53015 * 62.49782 * 13 11 10 31 31 H 1.08998 * 109.50614 * 177.59387 * 14 13 11 32 32 H 1.09002 * 109.50126 * 297.67389 * 14 13 11 33 33 H 1.09006 * 109.46034 * 60.84188 * 15 14 13 34 34 H 1.08999 * 109.46188 * 180.80719 * 15 14 13 35 35 H 1.08001 * 120.02221 * 0.02562 * 18 17 16 36 36 H 1.07998 * 119.93898 * 179.97438 * 19 18 17 37 37 H 1.08002 * 119.91651 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.97406 * 180.02562 * 21 20 19 39 39 H 1.08993 * 109.46409 * 178.24074 * 24 16 15 40 40 H 1.09005 * 109.45640 * 58.27307 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2127 6 1 1.8903 2.3965 1.2123 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2056 -3.6158 0.0005 11 6 1.5053 -4.9071 -0.0001 12 1 0.5928 -4.8260 -0.5908 13 6 1.1505 -5.2969 1.4375 14 6 0.4750 -6.6710 1.4336 15 6 1.4125 -7.6931 0.7868 16 7 1.7213 -7.2755 -0.5867 17 6 2.4691 -8.2525 -1.2514 18 6 3.7425 -8.5781 -0.8043 19 6 4.4791 -9.5433 -1.4634 20 6 3.9501 -10.1862 -2.5673 21 6 2.6818 -9.8663 -3.0160 22 6 1.9365 -8.9051 -2.3582 23 9 0.6952 -8.5963 -2.7931 24 6 2.4130 -5.9803 -0.6052 25 1 -0.4850 0.8400 -0.0004 26 1 0.6246 -2.5572 -0.8896 27 1 0.6240 -2.5568 0.8903 28 1 2.8405 -3.5487 0.7819 29 1 2.0592 -5.3395 2.0382 30 1 0.4692 -4.5573 1.8580 31 1 0.2585 -6.9731 2.4583 32 1 -0.4540 -6.6182 0.8658 33 1 2.3354 -7.7553 1.3637 34 1 0.9287 -8.6697 0.7695 35 1 4.1569 -8.0772 0.0581 36 1 5.4698 -9.7961 -1.1156 37 1 4.5289 -10.9400 -3.0804 38 1 2.2713 -10.3706 -3.8783 39 1 2.6558 -5.7129 -1.6336 40 1 3.3311 -6.0506 -0.0219 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000584405444.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:15 Heat of formation + Delta-G solvation = -36.597978 kcal Electronic energy + Delta-G solvation = -21441.017034 eV Core-core repulsion = 18168.758564 eV Total energy + Delta-G solvation = -3272.258471 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.74193 -41.14595 -39.16993 -36.84300 -34.86026 -33.63741 -31.49873 -31.02617 -29.98407 -27.78277 -25.61430 -24.10637 -23.71736 -23.13154 -22.36606 -20.83885 -18.82297 -18.48024 -17.69569 -17.27195 -16.85140 -16.58782 -16.07264 -15.89676 -15.69297 -15.44066 -15.10622 -14.94180 -14.76260 -14.33224 -14.08361 -13.84500 -13.61850 -13.50275 -13.05794 -12.87636 -12.77095 -12.60903 -12.30895 -12.26243 -12.14586 -11.88749 -11.64602 -11.54680 -11.21758 -10.67843 -9.91829 -9.59316 -9.51858 -9.09577 -8.23268 -6.34987 0.16205 0.23986 1.40511 1.41664 1.55541 2.38550 2.58160 2.64282 3.09961 3.37331 3.62481 3.77070 3.80363 3.89590 3.98976 4.10209 4.28817 4.31084 4.35622 4.38574 4.46800 4.53742 4.64675 4.75286 4.82458 4.89102 5.00978 5.03368 5.09730 5.17099 5.21295 5.28883 5.33173 5.37092 5.45080 5.60758 5.80167 5.88854 6.01430 6.34646 6.43373 6.70985 6.88846 7.36147 8.88611 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.026166 B = 0.003583 C = 0.003479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.852559 B = 7813.385373 C = 8047.061620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.000 4.000 3 Si 0.975 3.025 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.276 1.276 7 C -0.535 4.535 8 H 0.066 0.934 9 C 0.214 3.786 10 N -0.683 5.683 11 C 0.092 3.908 12 H 0.047 0.953 13 C -0.142 4.142 14 C -0.107 4.107 15 C 0.068 3.932 16 N -0.519 5.519 17 C 0.040 3.960 18 C -0.126 4.126 19 C -0.116 4.116 20 C -0.088 4.088 21 C -0.153 4.153 22 C 0.088 3.912 23 F -0.149 7.149 24 C 0.094 3.906 25 H 0.265 0.735 26 H -0.009 1.009 27 H -0.035 1.035 28 H 0.337 0.663 29 H 0.074 0.926 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.082 0.918 35 H 0.136 0.864 36 H 0.158 0.842 37 H 0.167 0.833 38 H 0.154 0.846 39 H 0.059 0.941 40 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.905 -23.424 -0.185 25.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.198 4.198 3 Si 0.799 3.201 4 H -0.185 1.185 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.573 4.573 8 H 0.084 0.916 9 C 0.087 3.913 10 N -0.313 5.313 11 C -0.019 4.019 12 H 0.065 0.935 13 C -0.181 4.181 14 C -0.145 4.145 15 C -0.058 4.058 16 N -0.241 5.241 17 C -0.055 4.055 18 C -0.146 4.146 19 C -0.135 4.135 20 C -0.106 4.106 21 C -0.172 4.172 22 C 0.068 3.932 23 F -0.128 7.128 24 C -0.033 4.033 25 H 0.074 0.926 26 H 0.010 0.990 27 H -0.017 1.017 28 H 0.155 0.845 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.071 0.929 34 H 0.101 0.899 35 H 0.154 0.846 36 H 0.176 0.824 37 H 0.185 0.815 38 H 0.171 0.829 39 H 0.078 0.922 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.334 -23.199 -1.126 24.676 hybrid contribution -0.265 1.264 1.072 1.678 sum 8.069 -21.935 -0.054 23.372 Atomic orbital electron populations 1.70107 1.07904 1.27965 1.51542 1.25989 0.95788 1.03512 0.94545 0.85247 0.78960 0.78114 0.77735 1.18480 1.20501 1.20191 1.21583 0.93866 0.91340 1.50559 0.91577 1.19156 0.90511 0.88697 0.92985 1.60461 1.20379 1.01100 1.49339 1.21467 0.95809 0.89202 0.95442 0.93458 1.22234 1.01072 0.97787 0.97003 1.21513 0.98298 0.93288 1.01391 1.22159 0.99037 0.98609 0.85969 1.59302 1.45488 1.01465 1.17855 1.18983 0.93679 0.96505 0.96343 1.21752 0.93394 0.98592 1.00888 1.21486 1.01056 0.95355 0.95584 1.21450 0.93813 0.99391 0.95925 1.21422 0.96088 0.97931 1.01736 1.18103 0.81104 0.98598 0.95423 1.91455 1.40036 1.92385 1.88892 1.21810 0.94535 0.86444 1.00474 0.92620 0.99048 1.01722 0.84506 0.90773 0.93703 0.88897 0.92497 0.92871 0.89945 0.84647 0.82405 0.81526 0.82877 0.92238 0.93115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.74 13.29 21.45 0.28 -57.46 16 2 C 0.00 -0.02 5.46 84.66 0.46 0.45 16 3 Si 0.98 44.90 29.54 68.60 2.03 46.93 16 4 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 6 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 7 C -0.54 -31.17 9.32 25.60 0.24 -30.93 16 8 H 0.07 3.72 7.81 -2.91 -0.02 3.70 16 9 C 0.21 11.89 5.24 85.55 0.45 12.34 16 10 N -0.68 -30.32 6.24 -495.31 -3.09 -33.41 16 11 C 0.09 3.47 2.63 44.97 0.12 3.58 16 12 H 0.05 2.09 7.80 -2.39 -0.02 2.07 16 13 C -0.14 -4.51 5.25 30.67 0.16 -4.35 16 14 C -0.11 -2.75 6.09 30.65 0.19 -2.57 16 15 C 0.07 1.62 5.17 86.33 0.45 2.07 16 16 N -0.52 -14.98 4.46 -695.14 -3.10 -18.08 16 17 C 0.04 1.01 4.69 38.21 0.18 1.19 16 18 C -0.13 -2.45 8.70 22.39 0.19 -2.26 16 19 C -0.12 -1.62 10.04 22.26 0.22 -1.40 16 20 C -0.09 -1.14 10.04 22.29 0.22 -0.92 16 21 C -0.15 -2.75 10.02 22.29 0.22 -2.52 16 22 C 0.09 2.26 7.31 22.48 0.16 2.42 16 23 F -0.15 -4.62 17.08 44.97 0.77 -3.85 16 24 C 0.09 3.02 4.73 86.32 0.41 3.43 16 25 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 26 H -0.01 -0.53 8.06 -2.39 -0.02 -0.55 16 27 H -0.03 -2.06 7.49 -2.39 -0.02 -2.07 16 28 H 0.34 13.88 8.44 -89.69 -0.76 13.13 16 29 H 0.07 2.10 8.10 -2.38 -0.02 2.08 16 30 H 0.04 1.63 7.52 -2.39 -0.02 1.62 16 31 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.05 1.10 7.54 -2.38 -0.02 1.08 16 34 H 0.08 1.81 8.11 -2.39 -0.02 1.79 16 35 H 0.14 2.37 7.14 -2.91 -0.02 2.35 16 36 H 0.16 1.23 8.06 -2.91 -0.02 1.21 16 37 H 0.17 0.97 8.06 -2.91 -0.02 0.95 16 38 H 0.15 2.10 8.06 -2.91 -0.02 2.08 16 39 H 0.06 2.14 8.11 -2.39 -0.02 2.12 16 40 H 0.05 1.45 7.35 -2.38 -0.02 1.44 16 Total: -1.00 -69.37 328.84 0.84 -68.53 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.27 Total: 16.81 kcal Atomic # 6 Polarization: -23.15 SS G_CDS: 3.68 Total: -19.47 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -5.91 Total: -108.96 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 0.77 Total: -3.85 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.93 kcal Total: -69.37 0.84 -68.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000584405444.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.937 kcal (2) G-P(sol) polarization free energy of solvation -69.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds