Wall clock time and date at job start Wed Apr 15 2020 11:43:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86792 * 120.00052 * 2 1 4 4 H 1.48503 * 109.47362 * 270.00044 * 3 2 1 5 5 H 1.48504 * 109.47213 * 29.99600 * 3 2 1 6 6 H 1.48497 * 109.47562 * 149.99805 * 3 2 1 7 7 C 1.38811 * 119.99896 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00116 * 163.37551 * 7 2 1 9 9 N 1.36938 * 120.00176 * 343.37237 * 7 2 1 10 10 C 1.46498 * 119.99774 * 319.24648 * 9 7 2 11 11 C 1.50701 * 109.47516 * 264.16897 * 10 9 7 12 12 C 1.38193 * 120.02335 * 260.68222 * 11 10 9 13 13 C 1.38233 * 120.10681 * 179.74379 * 12 11 10 14 14 C 1.38323 * 120.16253 * 0.55192 * 13 12 11 15 15 C 1.38234 * 120.05062 * 359.70325 * 14 13 12 16 16 F 1.35099 * 120.06072 * 180.02562 * 15 14 13 17 17 C 1.38786 * 120.02137 * 80.95178 * 11 10 9 18 18 N 1.39842 * 120.08285 * 0.02562 * 17 11 10 19 19 C 1.46497 * 120.00050 * 139.24944 * 9 7 2 20 20 C 1.55234 * 110.58561 * 55.54119 * 19 9 7 21 21 C 1.54881 * 102.59175 * 203.34063 * 20 19 9 22 22 C 1.54273 * 104.31357 * 37.93121 * 21 20 19 23 23 C 1.53876 * 106.59772 * 336.32180 * 22 21 20 24 24 H 0.96993 * 119.99816 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.47286 * 24.17156 * 10 9 7 26 26 H 1.09005 * 109.47229 * 144.16613 * 10 9 7 27 27 H 1.08007 * 119.94613 * 359.97438 * 12 11 10 28 28 H 1.08000 * 119.91737 * 180.27528 * 13 12 11 29 29 H 1.08004 * 119.97935 * 179.72272 * 14 13 12 30 30 H 0.96991 * 119.99634 * 7.13587 * 18 17 11 31 31 H 0.96999 * 119.99805 * 187.13143 * 18 17 11 32 32 H 1.09008 * 110.43373 * 178.13314 * 19 9 7 33 33 H 1.09004 * 110.89645 * 85.04097 * 20 19 9 34 34 H 1.09004 * 110.76411 * 321.57313 * 20 19 9 35 35 H 1.09005 * 110.48656 * 279.19057 * 21 20 19 36 36 H 1.08997 * 110.48655 * 156.67607 * 21 20 19 37 37 H 1.09000 * 110.03097 * 95.60959 * 22 21 20 38 38 H 1.09002 * 110.03241 * 216.99485 * 22 21 20 39 39 H 1.08999 * 110.02897 * 119.28304 * 23 22 21 40 40 H 1.08991 * 110.03426 * 240.66978 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4402 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 3.0564 -1.2219 -0.2670 9 7 1.3685 -2.3631 0.3404 10 6 0.4156 -2.3746 1.4530 11 6 1.1126 -2.8366 2.7068 12 6 0.9836 -4.1468 3.1268 13 6 1.6265 -4.5738 4.2737 14 6 2.3920 -3.6891 5.0117 15 6 2.5213 -2.3756 4.6005 16 9 3.2693 -1.5115 5.3208 17 6 1.8799 -1.9451 3.4434 18 7 2.0072 -0.6171 3.0241 19 6 1.6350 -3.5936 -0.4086 20 6 3.1537 -3.9149 -0.4080 21 6 3.3116 -4.8022 -1.6677 22 6 2.3541 -4.1723 -2.7003 23 6 1.2880 -3.4039 -1.8998 24 1 -0.4849 0.8400 -0.0004 25 1 0.0226 -1.3694 1.6052 26 1 -0.4047 -3.0542 1.2219 27 1 0.3826 -4.8393 2.5561 28 1 1.5272 -5.5995 4.5967 29 1 2.8894 -4.0247 5.9097 30 1 1.4788 -0.2910 2.2790 31 1 2.6240 -0.0221 3.4785 32 1 1.0692 -4.4251 0.0119 33 1 3.4343 -4.4654 0.4900 34 1 3.7419 -3.0021 -0.5023 35 1 3.0166 -5.8289 -1.4506 36 1 4.3389 -4.7700 -2.0306 37 1 2.9013 -3.4867 -3.3473 38 1 1.8829 -4.9530 -3.2974 39 1 1.3179 -2.3455 -2.1583 40 1 0.2988 -3.8112 -2.1084 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602476986.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:25 Heat of formation + Delta-G solvation = -25.816421 kcal Electronic energy + Delta-G solvation = -22752.019867 eV Core-core repulsion = 19480.228920 eV Total energy + Delta-G solvation = -3271.790947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.63597 -40.30255 -38.94461 -36.29260 -35.00436 -33.33553 -31.58339 -29.42298 -29.30872 -28.24516 -27.25505 -24.53005 -23.03714 -21.98345 -21.26244 -20.69205 -18.55992 -18.22829 -17.79782 -17.36755 -16.89395 -16.56435 -16.38522 -15.90237 -15.78001 -15.19312 -15.12102 -14.61598 -14.23035 -14.04434 -13.99346 -13.42185 -13.18488 -12.86297 -12.82798 -12.67110 -12.49199 -12.26691 -11.88514 -11.81026 -11.76507 -11.71883 -11.63151 -11.43210 -11.13925 -11.05518 -10.50863 -9.44730 -8.42000 -8.25272 -7.81672 -5.42364 0.46406 0.76516 1.34929 1.43070 1.48161 2.44780 2.91416 3.14828 3.25548 3.52239 3.76754 4.02312 4.04903 4.10498 4.24248 4.35093 4.55166 4.61000 4.71402 4.79120 4.86859 4.94475 4.96895 5.01791 5.04889 5.24439 5.26639 5.28721 5.35984 5.39536 5.54565 5.57891 5.65140 5.67299 5.71653 5.80450 5.89839 6.14661 6.52807 6.73582 7.01311 7.20675 7.88817 8.44745 9.14102 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.012814 B = 0.009022 C = 0.006211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.587548 B = 3102.875267 C = 4506.954357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.026 4.026 3 Si 0.917 3.083 4 H -0.289 1.289 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.221 4.221 8 H 0.044 0.956 9 N -0.578 5.578 10 C 0.190 3.810 11 C -0.154 4.154 12 C -0.082 4.082 13 C -0.152 4.152 14 C -0.115 4.115 15 C -0.023 4.023 16 F -0.159 7.159 17 C 0.193 3.807 18 N -0.871 5.871 19 C 0.168 3.832 20 C -0.127 4.127 21 C -0.112 4.112 22 C -0.114 4.114 23 C -0.130 4.130 24 H 0.252 0.748 25 H 0.069 0.931 26 H 0.038 0.962 27 H 0.136 0.864 28 H 0.157 0.843 29 H 0.150 0.850 30 H 0.410 0.590 31 H 0.389 0.611 32 H 0.064 0.936 33 H 0.053 0.947 34 H 0.042 0.958 35 H 0.077 0.923 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.073 0.927 39 H 0.040 0.960 40 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.960 -9.825 4.162 11.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.223 4.223 3 Si 0.745 3.255 4 H -0.216 1.216 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.353 4.353 8 H 0.062 0.938 9 N -0.297 5.297 10 C 0.064 3.936 11 C -0.161 4.161 12 C -0.102 4.102 13 C -0.172 4.172 14 C -0.135 4.135 15 C -0.047 4.047 16 F -0.138 7.138 17 C 0.085 3.915 18 N -0.412 5.412 19 C 0.062 3.938 20 C -0.166 4.166 21 C -0.150 4.150 22 C -0.152 4.152 23 C -0.169 4.169 24 H 0.061 0.939 25 H 0.087 0.913 26 H 0.056 0.944 27 H 0.154 0.846 28 H 0.174 0.826 29 H 0.168 0.832 30 H 0.245 0.755 31 H 0.216 0.784 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.824 -9.640 4.145 10.866 hybrid contribution 0.546 2.178 -0.168 2.251 sum 3.371 -7.462 3.977 9.103 Atomic orbital electron populations 1.70065 1.05925 1.25689 1.54015 1.25565 0.95413 0.99945 1.01335 0.86085 0.79191 0.82277 0.77897 1.21591 1.21321 1.19694 1.18839 0.91642 0.85370 1.39446 0.93841 1.43906 1.49261 1.05371 1.31114 1.19613 0.89986 1.00630 0.83342 1.20569 1.02894 0.94158 0.98467 1.21096 0.98687 0.93865 0.96525 1.20978 0.99755 1.00520 0.95897 1.21064 1.00562 0.90365 1.01490 1.17472 1.03222 0.90016 0.94032 1.91347 1.75274 1.70045 1.77155 1.17894 0.95377 0.86471 0.91775 1.42927 1.49142 1.08976 1.40184 1.21466 0.93907 0.88039 0.90434 1.22776 0.98117 0.98377 0.97373 1.22241 0.99123 0.98917 0.94692 1.22025 0.96677 0.98916 0.97589 1.22446 0.97651 0.99570 0.97255 0.93860 0.91290 0.94398 0.84628 0.82568 0.83216 0.75489 0.78377 0.91798 0.92802 0.93883 0.90401 0.91563 0.93134 0.90820 0.94077 0.93532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.03 11.49 21.65 0.25 -48.78 16 2 C -0.03 -1.31 3.28 84.86 0.28 -1.03 16 3 Si 0.92 42.04 29.11 68.60 2.00 44.04 16 4 H -0.29 -13.46 7.11 99.48 0.71 -12.75 16 5 H -0.29 -13.12 7.11 99.48 0.71 -12.42 16 6 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 7 C -0.22 -11.10 6.97 84.03 0.59 -10.52 16 8 H 0.04 2.31 6.50 -2.91 -0.02 2.29 16 9 N -0.58 -26.29 2.43 -675.70 -1.64 -27.93 16 10 C 0.19 8.42 4.84 85.63 0.41 8.84 16 11 C -0.15 -6.01 5.47 -19.74 -0.11 -6.11 16 12 C -0.08 -2.58 9.66 22.26 0.22 -2.37 16 13 C -0.15 -4.05 10.04 22.29 0.22 -3.82 16 14 C -0.12 -3.37 10.02 22.29 0.22 -3.15 16 15 C -0.02 -0.84 7.31 22.48 0.16 -0.68 16 16 F -0.16 -5.76 16.66 44.97 0.75 -5.01 16 17 C 0.19 7.76 6.74 38.21 0.26 8.02 16 18 N -0.87 -36.66 8.65 -51.21 -0.44 -37.11 16 19 C 0.17 6.57 3.38 46.19 0.16 6.73 16 20 C -0.13 -4.53 6.44 32.00 0.21 -4.33 16 21 C -0.11 -3.15 6.82 31.67 0.22 -2.94 16 22 C -0.11 -3.46 6.80 31.32 0.21 -3.25 16 23 C -0.13 -4.97 6.42 31.32 0.20 -4.77 16 24 H 0.25 13.32 8.31 -92.71 -0.77 12.55 16 25 H 0.07 3.48 4.61 -2.39 -0.01 3.46 16 26 H 0.04 1.61 7.95 -2.38 -0.02 1.59 16 27 H 0.14 3.69 8.04 -2.91 -0.02 3.66 16 28 H 0.16 2.96 8.06 -2.91 -0.02 2.94 16 29 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 30 H 0.41 18.79 3.71 -92.72 -0.34 18.45 16 31 H 0.39 15.10 8.35 -92.71 -0.77 14.33 16 32 H 0.06 2.32 7.94 -2.38 -0.02 2.30 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 34 H 0.04 1.76 6.41 -2.38 -0.02 1.75 16 35 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 37 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.04 1.90 7.10 -2.39 -0.02 1.89 16 40 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -55.87 317.75 4.10 -51.77 By element: Atomic # 1 Polarization: 42.46 SS G_CDS: -0.05 Total: 42.40 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 3.25 Total: -19.38 kcal Atomic # 7 Polarization: -111.98 SS G_CDS: -1.84 Total: -113.82 kcal Atomic # 9 Polarization: -5.76 SS G_CDS: 0.75 Total: -5.01 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 2.00 Total: 44.04 kcal Total: -55.87 4.10 -51.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602476986.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.950 kcal (2) G-P(sol) polarization free energy of solvation -55.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds