Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48499 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47065 * 299.99891 * 3 2 1 6 6 H 1.48503 * 109.46938 * 60.00044 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.51728 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.27589 * 182.37636 * 10 9 7 12 12 N 1.46847 * 109.51335 * 59.18419 * 11 10 9 13 13 C 1.46899 * 110.99862 * 174.15436 * 12 11 10 14 14 C 1.50705 * 109.46990 * 170.00184 * 13 12 11 15 15 C 1.38194 * 120.02518 * 259.72240 * 14 13 12 16 16 C 1.38227 * 120.10942 * 179.78640 * 15 14 13 17 17 C 1.38330 * 120.16243 * 0.47082 * 16 15 14 18 18 C 1.38233 * 120.04938 * 359.78843 * 17 16 15 19 19 F 1.35098 * 120.05629 * 179.97438 * 18 17 16 20 20 C 1.38786 * 120.02777 * 80.00089 * 14 13 12 21 21 N 1.39848 * 120.07856 * 0.02562 * 20 14 13 22 22 C 1.46847 * 111.20163 * 298.24410 * 12 11 10 23 23 C 1.53041 * 109.51486 * 61.75514 * 22 12 11 24 24 H 0.97004 * 119.99580 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.52260 * 300.12099 * 9 7 2 26 26 H 1.09000 * 109.50507 * 62.44301 * 10 9 7 27 27 H 1.08999 * 109.54263 * 302.33234 * 10 9 7 28 28 H 1.09002 * 109.46396 * 179.19729 * 11 10 9 29 29 H 1.08994 * 109.46485 * 299.17654 * 11 10 9 30 30 H 1.09002 * 109.47485 * 289.99621 * 13 12 11 31 31 H 1.08997 * 109.47251 * 50.00559 * 13 12 11 32 32 H 1.08000 * 119.94444 * 0.02562 * 15 14 13 33 33 H 1.08007 * 119.91869 * 180.23273 * 16 15 14 34 34 H 1.08005 * 119.97489 * 179.76006 * 17 16 15 35 35 H 0.97003 * 119.99987 * 359.97438 * 21 20 14 36 36 H 0.96998 * 120.00030 * 180.02562 * 21 20 14 37 37 H 1.09005 * 109.46836 * 301.74653 * 22 12 11 38 38 H 1.08995 * 109.45748 * 181.76188 * 22 12 11 39 39 H 1.08996 * 109.50341 * 180.87808 * 23 22 12 40 40 H 1.09004 * 109.53393 * 60.77542 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2448 -3.6639 0.0005 11 6 1.4749 -4.9852 -0.0594 12 7 0.6532 -5.0194 -1.2760 13 6 0.0068 -6.3285 -1.4380 14 6 -1.0109 -6.2524 -2.5469 15 6 -2.3523 -6.1118 -2.2458 16 6 -3.2869 -6.0374 -3.2616 17 6 -2.8847 -6.1130 -4.5830 18 6 -1.5452 -6.2590 -4.8916 19 9 -1.1523 -6.3334 -6.1820 20 6 -0.6024 -6.3292 -3.8710 21 7 0.7537 -6.4778 -4.1787 22 6 -0.3407 -3.9383 -1.2761 23 6 0.3751 -2.5858 -1.2525 24 1 -0.4850 0.8401 0.0004 25 1 0.6219 -2.5566 0.8889 26 1 2.8426 -3.6321 0.9114 27 1 2.8994 -3.5846 -0.8674 28 1 2.1801 -5.8162 -0.0739 29 1 0.8312 -5.0704 0.8161 30 1 0.7593 -7.0770 -1.6864 31 1 -0.4892 -6.6064 -0.5081 32 1 -2.6706 -6.0562 -1.2153 33 1 -4.3341 -5.9238 -3.0229 34 1 -3.6179 -6.0584 -5.3742 35 1 1.4101 -6.5270 -3.4661 36 1 1.0380 -6.5310 -5.1045 37 1 -0.9757 -4.0285 -0.3948 38 1 -0.9539 -4.0090 -2.1744 39 1 -0.3629 -1.7838 -1.2369 40 1 0.9997 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602596401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = -26.348846 kcal Electronic energy + Delta-G solvation = -21993.404582 eV Core-core repulsion = 18721.590547 eV Total energy + Delta-G solvation = -3271.814035 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.68561 -39.70643 -37.73846 -34.64215 -33.94555 -31.91140 -30.14885 -29.69726 -28.53858 -26.56914 -24.47594 -22.25361 -22.17344 -21.81804 -20.59070 -18.57417 -17.56197 -17.08575 -16.53395 -16.34013 -15.60702 -15.17089 -14.92311 -14.46594 -14.40873 -14.29961 -13.80307 -13.30807 -12.89083 -12.78025 -12.66223 -12.19768 -12.10958 -11.89602 -11.55010 -11.34433 -10.97186 -10.88222 -10.74196 -10.63516 -10.39106 -10.19053 -9.94867 -9.40942 -8.96067 -8.72977 -8.54075 -8.27009 -7.77299 -7.40152 -5.94982 -4.00169 1.26419 1.55806 3.31621 3.39777 3.43615 3.69513 3.92047 4.33737 4.46818 4.54685 4.80500 4.99131 5.21500 5.31128 5.35529 5.54244 5.57065 5.72886 5.87546 5.92238 6.08434 6.11407 6.13215 6.25268 6.34970 6.42276 6.58843 6.64747 6.67730 6.86653 6.88553 7.08579 7.18163 7.46003 7.49841 7.63017 7.69589 7.82108 7.85514 8.07639 8.19549 8.51001 9.03750 9.64196 11.11188 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.004511 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.891342 B = 6204.939971 C = 6508.702705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.061 3.939 3 Si 0.888 3.112 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.048 3.952 10 C -0.105 4.105 11 C 0.059 3.941 12 N -0.530 5.530 13 C 0.097 3.903 14 C -0.132 4.132 15 C -0.072 4.072 16 C -0.155 4.155 17 C -0.107 4.107 18 C 0.007 3.993 19 F -0.148 7.148 20 C 0.215 3.785 21 N -0.862 5.862 22 C 0.058 3.942 23 C -0.103 4.103 24 H 0.258 0.742 25 H 0.020 0.980 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.025 0.975 30 H 0.071 0.929 31 H 0.040 0.960 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.409 0.591 36 H 0.397 0.603 37 H 0.020 0.980 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.905 -14.815 -6.084 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.143 4.143 11 C -0.069 4.069 12 N -0.255 5.255 13 C -0.030 4.030 14 C -0.137 4.137 15 C -0.091 4.091 16 C -0.176 4.176 17 C -0.127 4.127 18 C -0.017 4.017 19 F -0.127 7.127 20 C 0.107 3.893 21 N -0.401 5.401 22 C -0.069 4.069 23 C -0.141 4.141 24 H 0.068 0.932 25 H 0.038 0.962 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.075 0.925 29 H 0.043 0.957 30 H 0.090 0.910 31 H 0.058 0.942 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.147 0.853 35 H 0.240 0.760 36 H 0.225 0.775 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.717 -14.615 -6.503 16.423 hybrid contribution 0.267 0.846 0.332 0.947 sum -3.451 -13.768 -6.171 15.478 Atomic orbital electron populations 1.69889 1.05857 1.26148 1.51173 1.24965 0.94822 0.98980 0.95243 0.86596 0.80184 0.84077 0.77492 1.19859 1.21098 1.21147 1.21247 0.92873 0.90705 1.49971 0.92774 1.18688 0.92689 0.91709 0.94011 1.21666 0.98678 0.93746 1.00212 1.22143 0.95797 0.99273 0.89641 1.62208 1.23557 1.01548 1.38180 1.20886 0.94363 0.93107 0.94653 1.19135 0.94695 1.08001 0.91854 1.20917 0.91750 0.96930 0.99531 1.20673 0.99720 1.05680 0.91502 1.20865 0.93396 1.00583 0.97850 1.17106 0.92787 1.14438 0.77401 1.91410 1.91610 1.94864 1.34835 1.17486 0.84817 0.94972 0.92034 1.42424 1.04129 1.82656 1.10937 1.22303 0.93089 0.92605 0.98881 1.21644 1.00108 0.93192 0.99152 0.93183 0.96216 0.93233 0.92569 0.92524 0.95704 0.91033 0.94195 0.85782 0.85584 0.85272 0.76042 0.77478 0.96142 0.92061 0.89088 0.94077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 11.37 55.43 0.63 -24.94 16 2 C 0.06 1.69 5.31 -17.82 -0.09 1.59 16 3 Si 0.89 21.44 29.54 -169.99 -5.02 16.42 16 4 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.51 -14.05 8.57 -34.44 -0.29 -14.34 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 10 C -0.11 -2.17 5.32 -26.65 -0.14 -2.31 16 11 C 0.06 1.02 5.43 -3.83 -0.02 1.00 16 12 N -0.53 -8.94 4.80 -236.11 -1.13 -10.07 16 13 C 0.10 1.34 4.71 -4.97 -0.02 1.32 16 14 C -0.13 -1.81 3.68 -104.43 -0.38 -2.19 16 15 C -0.07 -0.92 8.66 -39.60 -0.34 -1.26 16 16 C -0.16 -1.83 10.04 -39.55 -0.40 -2.23 16 17 C -0.11 -1.32 10.02 -39.55 -0.40 -1.72 16 18 C 0.01 0.09 7.31 -39.26 -0.29 -0.20 16 19 F -0.15 -2.07 16.64 2.25 0.04 -2.03 16 20 C 0.21 2.97 6.74 -83.67 -0.56 2.41 16 21 N -0.86 -10.45 9.00 32.46 0.29 -10.16 16 22 C 0.06 1.14 4.81 -3.83 -0.02 1.12 16 23 C -0.10 -2.45 5.12 -26.65 -0.14 -2.58 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 25 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 28 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.87 7.09 -51.93 -0.37 0.50 16 31 H 0.04 0.53 7.94 -51.93 -0.41 0.12 16 32 H 0.12 1.45 8.03 -52.49 -0.42 1.02 16 33 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 34 H 0.13 1.31 8.06 -52.48 -0.42 0.89 16 35 H 0.41 4.78 7.06 -40.82 -0.29 4.49 16 36 H 0.40 4.28 8.32 -40.82 -0.34 3.94 16 37 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.06 1.18 6.04 -51.93 -0.31 0.87 16 39 H 0.09 2.43 6.17 -51.93 -0.32 2.11 16 40 H 0.04 1.02 8.14 -51.93 -0.42 0.59 16 LS Contribution 320.35 15.07 4.83 4.83 Total: -1.00 -28.96 320.35 -9.48 -38.43 By element: Atomic # 1 Polarization: 11.75 SS G_CDS: -5.81 Total: 5.94 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: -3.30 Total: -18.42 kcal Atomic # 7 Polarization: -44.95 SS G_CDS: -0.21 Total: -45.17 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.04 Total: -2.03 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.96 -9.48 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602596401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.084 kcal (2) G-P(sol) polarization free energy of solvation -28.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds