Wall clock time and date at job start Wed Apr 15 2020 11:43:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86801 * 120.00393 * 2 1 4 4 H 1.48499 * 109.47204 * 179.97438 * 3 2 1 5 5 H 1.48490 * 109.47065 * 299.99891 * 3 2 1 6 6 H 1.48503 * 109.46938 * 60.00044 * 3 2 1 7 7 C 1.37880 * 119.99840 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00086 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.53119 * 109.51728 * 179.97438 * 9 7 2 11 11 C 1.53044 * 109.27589 * 182.37636 * 10 9 7 12 12 N 1.46847 * 109.51335 * 59.18419 * 11 10 9 13 13 C 1.46899 * 110.99862 * 174.15436 * 12 11 10 14 14 C 1.50705 * 109.46990 * 170.00184 * 13 12 11 15 15 C 1.38194 * 120.02518 * 259.72240 * 14 13 12 16 16 C 1.38227 * 120.10942 * 179.78640 * 15 14 13 17 17 C 1.38330 * 120.16243 * 0.47082 * 16 15 14 18 18 C 1.38233 * 120.04938 * 359.78843 * 17 16 15 19 19 F 1.35098 * 120.05629 * 179.97438 * 18 17 16 20 20 C 1.38786 * 120.02777 * 80.00089 * 14 13 12 21 21 N 1.39848 * 120.07856 * 0.02562 * 20 14 13 22 22 C 1.46847 * 111.20163 * 298.24410 * 12 11 10 23 23 C 1.53041 * 109.51486 * 61.75514 * 22 12 11 24 24 H 0.97004 * 119.99580 * 359.97438 * 1 2 3 25 25 H 1.08993 * 109.52260 * 300.12099 * 9 7 2 26 26 H 1.09000 * 109.50507 * 62.44301 * 10 9 7 27 27 H 1.08999 * 109.54263 * 302.33234 * 10 9 7 28 28 H 1.09002 * 109.46396 * 179.19729 * 11 10 9 29 29 H 1.08994 * 109.46485 * 299.17654 * 11 10 9 30 30 H 1.09002 * 109.47485 * 289.99621 * 13 12 11 31 31 H 1.08997 * 109.47251 * 50.00559 * 13 12 11 32 32 H 1.08000 * 119.94444 * 0.02562 * 15 14 13 33 33 H 1.08007 * 119.91869 * 180.23273 * 16 15 14 34 34 H 1.08005 * 119.97489 * 179.76006 * 17 16 15 35 35 H 0.97003 * 119.99987 * 359.97438 * 21 20 14 36 36 H 0.96998 * 120.00030 * 180.02562 * 21 20 14 37 37 H 1.09005 * 109.46836 * 301.74653 * 22 12 11 38 38 H 1.08995 * 109.45748 * 181.76188 * 22 12 11 39 39 H 1.08996 * 109.50341 * 180.87808 * 23 22 12 40 40 H 1.09004 * 109.53393 * 60.77542 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8906 2.3963 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2508 -2.4992 0.0005 10 6 2.2448 -3.6639 0.0005 11 6 1.4749 -4.9852 -0.0594 12 7 0.6532 -5.0194 -1.2760 13 6 0.0068 -6.3285 -1.4380 14 6 -1.0109 -6.2524 -2.5469 15 6 -2.3523 -6.1118 -2.2458 16 6 -3.2869 -6.0374 -3.2616 17 6 -2.8847 -6.1130 -4.5830 18 6 -1.5452 -6.2590 -4.8916 19 9 -1.1523 -6.3334 -6.1820 20 6 -0.6024 -6.3292 -3.8710 21 7 0.7537 -6.4778 -4.1787 22 6 -0.3407 -3.9383 -1.2761 23 6 0.3751 -2.5858 -1.2525 24 1 -0.4850 0.8401 0.0004 25 1 0.6219 -2.5566 0.8889 26 1 2.8426 -3.6321 0.9114 27 1 2.8994 -3.5846 -0.8674 28 1 2.1801 -5.8162 -0.0739 29 1 0.8312 -5.0704 0.8161 30 1 0.7593 -7.0770 -1.6864 31 1 -0.4892 -6.6064 -0.5081 32 1 -2.6706 -6.0562 -1.2153 33 1 -4.3341 -5.9238 -3.0229 34 1 -3.6179 -6.0584 -5.3742 35 1 1.4101 -6.5270 -3.4661 36 1 1.0380 -6.5310 -5.1045 37 1 -0.9757 -4.0285 -0.3948 38 1 -0.9539 -4.0090 -2.1744 39 1 -0.3629 -1.7838 -1.2369 40 1 0.9997 -2.4885 -2.1405 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602596401.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:29 Heat of formation + Delta-G solvation = -43.972548 kcal Electronic energy + Delta-G solvation = -21994.168803 eV Core-core repulsion = 18721.590547 eV Total energy + Delta-G solvation = -3272.578256 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.71941 -40.82003 -39.16337 -35.92714 -35.35453 -33.59395 -31.61407 -31.23742 -29.53897 -28.12446 -26.07329 -23.78070 -23.38098 -23.20200 -21.82883 -20.29831 -18.56293 -18.44495 -18.06351 -17.51424 -16.95980 -16.52036 -16.22408 -15.93350 -15.65259 -15.40251 -15.06461 -14.82116 -14.47147 -14.29841 -14.09365 -13.55516 -13.52612 -13.13605 -12.90912 -12.82044 -12.66298 -12.48274 -12.27374 -12.03880 -11.87852 -11.76019 -11.59756 -11.32369 -10.78347 -10.62539 -10.36460 -9.63143 -9.11642 -8.38874 -8.07269 -6.20338 0.26805 0.58831 1.39190 1.41321 1.52318 2.43866 2.68034 2.98157 3.19274 3.25297 3.34427 3.81235 4.04311 4.19632 4.27912 4.31702 4.37686 4.46760 4.52198 4.66506 4.68638 4.81956 4.93961 4.96398 5.01982 5.12551 5.15001 5.16068 5.26027 5.36131 5.46459 5.59444 5.62641 5.64839 5.94863 6.02302 6.05441 6.30858 6.36435 6.42494 6.53696 6.92170 6.92533 7.47450 8.97311 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.022254 B = 0.004511 C = 0.004301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.891342 B = 6204.939971 C = 6508.702705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.012 3.988 3 Si 0.951 3.049 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.280 1.280 7 C -0.532 4.532 8 H 0.050 0.950 9 C 0.044 3.956 10 C -0.099 4.099 11 C 0.065 3.935 12 N -0.531 5.531 13 C 0.101 3.899 14 C -0.148 4.148 15 C -0.078 4.078 16 C -0.156 4.156 17 C -0.107 4.107 18 C -0.016 4.016 19 F -0.154 7.154 20 C 0.204 3.796 21 N -0.859 5.859 22 C 0.077 3.923 23 C -0.093 4.093 24 H 0.259 0.741 25 H -0.012 1.012 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.093 0.907 29 H 0.024 0.976 30 H 0.093 0.907 31 H 0.050 0.950 32 H 0.134 0.866 33 H 0.151 0.849 34 H 0.149 0.851 35 H 0.411 0.589 36 H 0.402 0.598 37 H 0.014 0.986 38 H 0.065 0.935 39 H 0.056 0.944 40 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.788 -15.979 -6.213 17.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.206 1.206 7 C -0.570 4.570 8 H 0.068 0.932 9 C 0.026 3.974 10 C -0.136 4.136 11 C -0.063 4.063 12 N -0.257 5.257 13 C -0.025 4.025 14 C -0.153 4.153 15 C -0.097 4.097 16 C -0.176 4.176 17 C -0.127 4.127 18 C -0.040 4.040 19 F -0.133 7.133 20 C 0.096 3.904 21 N -0.398 5.398 22 C -0.051 4.051 23 C -0.131 4.131 24 H 0.068 0.932 25 H 0.006 0.994 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.112 0.888 29 H 0.042 0.958 30 H 0.112 0.888 31 H 0.068 0.932 32 H 0.152 0.848 33 H 0.169 0.831 34 H 0.167 0.833 35 H 0.242 0.758 36 H 0.231 0.769 37 H 0.032 0.968 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.585 -15.798 -6.635 17.506 hybrid contribution 0.200 1.200 0.361 1.269 sum -3.385 -14.598 -6.274 16.246 Atomic orbital electron populations 1.70028 1.07134 1.26886 1.51712 1.25731 0.95653 1.02298 0.94969 0.85615 0.79165 0.80013 0.77527 1.19180 1.20815 1.20596 1.21638 0.92965 0.92366 1.50018 0.93168 1.18663 0.93187 0.92696 0.92904 1.21527 0.97892 0.94084 1.00146 1.22084 0.96155 0.98300 0.89719 1.62115 1.23099 1.02422 1.38023 1.20937 0.95024 0.91357 0.95223 1.19212 0.95154 1.09209 0.91771 1.21172 0.91729 0.96387 1.00430 1.20987 1.00888 1.04724 0.91042 1.21181 0.93273 0.99437 0.98790 1.17386 0.93621 1.15714 0.77313 1.91391 1.91735 1.95024 1.35117 1.17653 0.85419 0.95065 0.92245 1.42416 1.03696 1.82330 1.11388 1.21943 0.92989 0.91403 0.98728 1.21391 0.98977 0.94926 0.97820 0.93174 0.99364 0.92832 0.93117 0.88846 0.95813 0.88848 0.93168 0.84780 0.83118 0.83302 0.75785 0.76896 0.96790 0.91679 0.92575 0.95807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.92 11.37 21.45 0.24 -53.68 16 2 C 0.01 0.66 5.31 84.66 0.45 1.11 16 3 Si 0.95 44.40 29.54 68.60 2.03 46.42 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 6 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 7 C -0.53 -29.87 8.57 25.60 0.22 -29.65 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.04 2.23 2.16 -11.46 -0.02 2.21 16 10 C -0.10 -4.01 5.32 30.65 0.16 -3.84 16 11 C 0.06 2.09 5.43 86.33 0.47 2.56 16 12 N -0.53 -17.00 4.80 -900.91 -4.32 -21.32 16 13 C 0.10 2.52 4.71 85.56 0.40 2.92 16 14 C -0.15 -3.79 3.68 -19.74 -0.07 -3.87 16 15 C -0.08 -1.84 8.66 22.26 0.19 -1.65 16 16 C -0.16 -3.34 10.04 22.29 0.22 -3.12 16 17 C -0.11 -2.44 10.02 22.29 0.22 -2.22 16 18 C -0.02 -0.43 7.31 22.48 0.16 -0.27 16 19 F -0.15 -4.16 16.64 44.97 0.75 -3.41 16 20 C 0.20 5.37 6.74 38.20 0.26 5.62 16 21 N -0.86 -19.57 9.00 -51.21 -0.46 -20.03 16 22 C 0.08 3.00 4.81 86.33 0.42 3.41 16 23 C -0.09 -4.52 5.12 30.65 0.16 -4.37 16 24 H 0.26 14.47 8.31 -92.71 -0.77 13.70 16 25 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 26 H 0.05 2.09 8.14 -2.39 -0.02 2.08 16 27 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 28 H 0.09 2.39 8.12 -2.39 -0.02 2.37 16 29 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.09 1.94 7.09 -2.39 -0.02 1.93 16 31 H 0.05 1.18 7.94 -2.39 -0.02 1.16 16 32 H 0.13 2.83 8.03 -2.91 -0.02 2.81 16 33 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 34 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.41 8.80 7.06 -92.71 -0.65 8.15 16 36 H 0.40 8.22 8.32 -92.71 -0.77 7.45 16 37 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 38 H 0.06 2.48 6.04 -2.39 -0.01 2.46 16 39 H 0.06 3.12 6.17 -2.39 -0.01 3.10 16 40 H 0.02 1.19 8.14 -2.38 -0.02 1.17 16 Total: -1.00 -63.13 320.35 1.10 -62.03 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: -0.37 Total: 21.13 kcal Atomic # 6 Polarization: -34.38 SS G_CDS: 3.24 Total: -31.14 kcal Atomic # 7 Polarization: -90.49 SS G_CDS: -4.54 Total: -95.04 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.75 Total: -3.41 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Total: -63.13 1.10 -62.03 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602596401.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.059 kcal (2) G-P(sol) polarization free energy of solvation -63.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds