Wall clock time and date at job start Wed Apr 15 2020 11:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47067 * 359.97438 * 3 2 1 5 5 H 1.48491 * 109.47135 * 239.99606 * 3 2 1 6 6 H 1.48497 * 109.47041 * 119.99483 * 3 2 1 7 7 C 1.37872 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99771 * 18.11810 * 7 2 1 9 9 C 1.50696 * 120.00356 * 198.10999 * 7 2 1 10 10 H 1.08997 * 109.50624 * 305.59953 * 9 7 2 11 11 C 1.53117 * 109.50249 * 65.68115 * 9 7 2 12 12 C 1.53127 * 109.16084 * 177.59707 * 11 9 7 13 13 C 1.53037 * 109.27590 * 302.34445 * 12 11 9 14 14 N 1.46846 * 109.52395 * 59.17726 * 13 12 11 15 15 C 1.46903 * 110.99807 * 174.16000 * 14 13 12 16 16 C 1.50698 * 109.47326 * 293.95835 * 15 14 13 17 17 C 1.38195 * 120.02513 * 259.99995 * 16 15 14 18 18 C 1.38228 * 120.11515 * 179.97438 * 17 16 15 19 19 C 1.38331 * 120.15852 * 0.02562 * 18 17 16 20 20 C 1.38234 * 120.04969 * 359.97438 * 19 18 17 21 21 F 1.35110 * 120.05574 * 180.02562 * 20 19 18 22 22 C 1.38795 * 120.02714 * 79.71817 * 16 15 14 23 23 N 1.39837 * 120.07923 * 0.02889 * 22 16 15 24 24 C 1.46847 * 111.20139 * 298.25811 * 14 13 12 25 25 H 0.96999 * 119.99781 * 174.62091 * 1 2 3 26 26 H 1.09005 * 109.51768 * 297.49625 * 11 9 7 27 27 H 1.08990 * 109.52552 * 57.62429 * 11 9 7 28 28 H 1.09003 * 109.49923 * 62.28300 * 12 11 9 29 29 H 1.08996 * 109.50141 * 182.35968 * 12 11 9 30 30 H 1.09001 * 109.46091 * 179.19769 * 13 12 11 31 31 H 1.09004 * 109.45638 * 299.16299 * 13 12 11 32 32 H 1.09008 * 109.46961 * 53.95151 * 15 14 13 33 33 H 1.08998 * 109.47027 * 173.95315 * 15 14 13 34 34 H 1.08004 * 119.94106 * 359.97438 * 17 16 15 35 35 H 1.07994 * 119.91980 * 180.02562 * 18 17 16 36 36 H 1.08002 * 119.97730 * 180.02562 * 19 18 17 37 37 H 0.97006 * 120.00052 * 359.97438 * 23 22 16 38 38 H 0.97000 * 119.99964 * 179.97438 * 23 22 16 39 39 H 1.09000 * 109.45992 * 301.72919 * 24 14 13 40 40 H 1.08996 * 109.46126 * 181.75759 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2124 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.5047 -2.1063 -0.2899 9 6 3.4555 -1.2261 0.4062 10 1 4.0180 -0.5137 -0.1972 11 6 3.5809 -0.8539 1.8861 12 6 5.0508 -0.9473 2.3051 13 6 5.5644 -2.3632 2.0340 14 7 5.4235 -2.6711 0.6051 15 6 6.0330 -3.9685 0.2836 16 6 7.5239 -3.8875 0.4877 17 6 8.3616 -3.7081 -0.5967 18 6 9.7293 -3.6330 -0.4116 19 6 10.2654 -3.7376 0.8593 20 6 9.4337 -3.9171 1.9488 21 9 9.9571 -4.0188 3.1902 22 6 8.0565 -3.9871 1.7655 23 7 7.2110 -4.1634 2.8654 24 6 4.0154 -2.6340 0.1901 25 1 -0.4850 -0.8364 -0.0788 26 1 3.2232 0.1647 2.0370 27 1 2.9856 -1.5417 2.4865 28 1 5.6389 -0.2308 1.7315 29 1 5.1410 -0.7240 3.3681 30 1 6.6147 -2.4291 2.3179 31 1 4.9847 -3.0778 2.6184 32 1 5.6182 -4.7366 0.9365 33 1 5.8217 -4.2217 -0.7553 34 1 7.9468 -3.6264 -1.5906 35 1 10.3810 -3.4923 -1.2612 36 1 11.3345 -3.6781 1.0007 37 1 6.2511 -4.2158 2.7358 38 1 7.5845 -4.2333 3.7579 39 1 3.4431 -3.3473 0.7832 40 1 3.9407 -2.8965 -0.8651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602705807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:33 Heat of formation + Delta-G solvation = -8.459789 kcal Electronic energy + Delta-G solvation = -22100.413932 eV Core-core repulsion = 18829.375625 eV Total energy + Delta-G solvation = -3271.038307 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.82403 -40.03531 -37.96445 -35.01523 -33.80110 -32.36441 -30.57684 -30.11867 -28.75621 -26.01256 -24.66022 -22.80369 -22.36806 -21.60210 -20.43286 -18.92395 -17.67204 -17.47617 -17.22351 -16.61272 -15.92927 -15.38125 -15.11139 -14.58046 -14.41122 -14.18717 -13.93682 -13.47063 -13.12195 -12.99626 -12.75597 -12.50025 -12.26676 -11.96324 -11.85649 -11.50093 -11.31427 -11.18955 -10.63487 -10.60675 -10.46241 -10.02520 -9.83188 -9.61469 -9.26516 -8.75642 -8.72454 -8.15554 -7.87697 -7.57542 -6.43689 -4.04315 1.16839 1.40127 3.41931 3.47560 3.57989 3.64940 3.69076 4.20030 4.47264 4.51923 4.68091 4.84198 5.09398 5.21064 5.27549 5.38276 5.41459 5.56972 5.61417 5.78726 5.88027 5.94243 6.00113 6.02393 6.15042 6.27775 6.30585 6.39172 6.46741 6.53475 6.66271 6.75444 6.85214 6.94568 7.25852 7.31752 7.45790 7.54274 7.57781 7.65005 8.21602 8.38734 8.92006 9.63964 10.96340 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.004426 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.568191 B = 6325.200955 C = 6468.180795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.032 3.968 3 Si 1.047 2.953 4 H -0.288 1.288 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.600 4.600 8 H 0.052 0.948 9 C 0.028 3.972 10 H 0.029 0.971 11 C -0.124 4.124 12 C -0.120 4.120 13 C 0.040 3.960 14 N -0.534 5.534 15 C 0.098 3.902 16 C -0.122 4.122 17 C -0.063 4.063 18 C -0.152 4.152 19 C -0.110 4.110 20 C 0.011 3.989 21 F -0.148 7.148 22 C 0.196 3.804 23 N -0.875 5.875 24 C 0.075 3.925 25 H 0.266 0.734 26 H 0.060 0.940 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.090 0.910 31 H 0.020 0.980 32 H 0.032 0.968 33 H 0.086 0.914 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.130 0.870 37 H 0.407 0.593 38 H 0.397 0.603 39 H 0.022 0.978 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.607 -8.517 3.003 20.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.173 4.173 3 Si 0.876 3.124 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.200 1.200 7 C -0.638 4.638 8 H 0.071 0.929 9 C 0.009 3.991 10 H 0.047 0.953 11 C -0.162 4.162 12 C -0.158 4.158 13 C -0.088 4.088 14 N -0.258 5.258 15 C -0.030 4.030 16 C -0.127 4.127 17 C -0.082 4.082 18 C -0.172 4.172 19 C -0.130 4.130 20 C -0.013 4.013 21 F -0.127 7.127 22 C 0.090 3.910 23 N -0.420 5.420 24 C -0.051 4.051 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.108 0.892 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.104 0.896 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.242 0.758 38 H 0.226 0.774 39 H 0.040 0.960 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 18.634 -6.530 2.832 19.947 hybrid contribution -0.439 -2.424 0.956 2.643 sum 18.194 -8.954 3.788 20.629 Atomic orbital electron populations 1.70871 1.07010 1.30801 1.45646 1.25748 0.96062 1.02474 0.93009 0.84005 0.75258 0.75679 0.77425 1.21458 1.20921 1.19986 1.21948 0.95115 0.96088 1.50633 0.92927 1.18976 0.96396 0.91765 0.91982 0.95298 1.22117 0.92788 1.01627 0.99685 1.21678 0.98760 0.95914 0.99417 1.22770 1.01241 0.96922 0.87862 1.62123 1.18331 1.28002 1.17381 1.20878 0.89405 0.91003 1.01721 1.19246 0.95957 1.06817 0.90667 1.20902 0.92778 0.96074 0.98433 1.20740 0.95142 1.05161 0.96206 1.20877 0.99578 1.00787 0.91748 1.17091 0.89901 1.13942 0.80320 1.91420 1.86838 1.94679 1.39741 1.17568 0.88328 0.96363 0.88747 1.43250 1.09279 1.82598 1.06839 1.22163 0.84162 0.99704 0.99104 0.92396 0.92102 0.93442 0.91913 0.93073 0.89175 0.96181 0.95035 0.89586 0.85266 0.85480 0.85220 0.75771 0.77398 0.96016 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.89 13.69 55.43 0.76 -27.13 16 2 C 0.03 0.91 5.34 -17.82 -0.10 0.82 16 3 Si 1.05 25.43 26.41 -169.99 -4.49 20.94 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.27 -6.16 5.57 56.52 0.31 -5.84 16 7 C -0.60 -16.66 8.82 -34.44 -0.30 -16.96 16 8 H 0.05 1.57 7.99 -52.48 -0.42 1.15 16 9 C 0.03 0.66 1.84 -91.69 -0.17 0.49 16 10 H 0.03 0.71 6.79 -51.93 -0.35 0.36 16 11 C -0.12 -2.70 4.97 -26.61 -0.13 -2.83 16 12 C -0.12 -2.15 6.09 -26.65 -0.16 -2.31 16 13 C 0.04 0.64 3.81 -3.83 -0.01 0.63 16 14 N -0.53 -9.05 4.65 -236.11 -1.10 -10.15 16 15 C 0.10 1.36 4.96 -4.98 -0.02 1.33 16 16 C -0.12 -1.57 5.19 -104.43 -0.54 -2.11 16 17 C -0.06 -0.72 9.66 -39.60 -0.38 -1.10 16 18 C -0.15 -1.57 10.04 -39.55 -0.40 -1.97 16 19 C -0.11 -1.20 10.02 -39.55 -0.40 -1.59 16 20 C 0.01 0.14 7.31 -39.26 -0.29 -0.15 16 21 F -0.15 -1.87 16.64 2.25 0.04 -1.83 16 22 C 0.20 2.48 5.54 -83.67 -0.46 2.02 16 23 N -0.87 -9.81 7.12 32.46 0.23 -9.58 16 24 C 0.08 1.51 4.68 -3.83 -0.02 1.50 16 25 H 0.27 8.12 8.73 -40.82 -0.36 7.77 16 26 H 0.06 1.40 4.86 -51.93 -0.25 1.15 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 29 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.09 1.34 4.35 -51.93 -0.23 1.11 16 31 H 0.02 0.31 6.90 -51.93 -0.36 -0.05 16 32 H 0.03 0.42 7.09 -51.92 -0.37 0.05 16 33 H 0.09 1.13 7.84 -51.93 -0.41 0.72 16 34 H 0.13 1.31 8.04 -52.48 -0.42 0.89 16 35 H 0.13 1.00 8.06 -52.49 -0.42 0.57 16 36 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 37 H 0.41 4.66 4.29 -40.82 -0.18 4.49 16 38 H 0.40 3.86 8.32 -40.82 -0.34 3.52 16 39 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 1.30 8.01 -51.93 -0.42 0.88 16 LS Contribution 308.48 15.07 4.65 4.65 Total: -1.00 -30.15 308.48 -8.81 -38.96 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -5.51 Total: 6.38 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -3.39 Total: -22.24 kcal Atomic # 7 Polarization: -46.75 SS G_CDS: -0.11 Total: -46.86 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 25.43 SS G_CDS: -4.49 Total: 20.94 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.15 -8.81 -38.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602705807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.496 kcal (2) G-P(sol) polarization free energy of solvation -30.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.811 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds