Wall clock time and date at job start Wed Apr 15 2020 11:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99878 * 2 1 4 4 H 1.48503 * 109.47067 * 359.97438 * 3 2 1 5 5 H 1.48491 * 109.47135 * 239.99606 * 3 2 1 6 6 H 1.48497 * 109.47041 * 119.99483 * 3 2 1 7 7 C 1.37872 * 120.00296 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99771 * 18.11810 * 7 2 1 9 9 C 1.50696 * 120.00356 * 198.10999 * 7 2 1 10 10 H 1.08997 * 109.50624 * 305.59953 * 9 7 2 11 11 C 1.53117 * 109.50249 * 65.68115 * 9 7 2 12 12 C 1.53127 * 109.16084 * 177.59707 * 11 9 7 13 13 C 1.53037 * 109.27590 * 302.34445 * 12 11 9 14 14 N 1.46846 * 109.52395 * 59.17726 * 13 12 11 15 15 C 1.46903 * 110.99807 * 174.16000 * 14 13 12 16 16 C 1.50698 * 109.47326 * 293.95835 * 15 14 13 17 17 C 1.38195 * 120.02513 * 259.99995 * 16 15 14 18 18 C 1.38228 * 120.11515 * 179.97438 * 17 16 15 19 19 C 1.38331 * 120.15852 * 0.02562 * 18 17 16 20 20 C 1.38234 * 120.04969 * 359.97438 * 19 18 17 21 21 F 1.35110 * 120.05574 * 180.02562 * 20 19 18 22 22 C 1.38795 * 120.02714 * 79.71817 * 16 15 14 23 23 N 1.39837 * 120.07923 * 0.02889 * 22 16 15 24 24 C 1.46847 * 111.20139 * 298.25811 * 14 13 12 25 25 H 0.96999 * 119.99781 * 174.62091 * 1 2 3 26 26 H 1.09005 * 109.51768 * 297.49625 * 11 9 7 27 27 H 1.08990 * 109.52552 * 57.62429 * 11 9 7 28 28 H 1.09003 * 109.49923 * 62.28300 * 12 11 9 29 29 H 1.08996 * 109.50141 * 182.35968 * 12 11 9 30 30 H 1.09001 * 109.46091 * 179.19769 * 13 12 11 31 31 H 1.09004 * 109.45638 * 299.16299 * 13 12 11 32 32 H 1.09008 * 109.46961 * 53.95151 * 15 14 13 33 33 H 1.08998 * 109.47027 * 173.95315 * 15 14 13 34 34 H 1.08004 * 119.94106 * 359.97438 * 17 16 15 35 35 H 1.07994 * 119.91980 * 180.02562 * 18 17 16 36 36 H 1.08002 * 119.97730 * 180.02562 * 19 18 17 37 37 H 0.97006 * 120.00052 * 359.97438 * 23 22 16 38 38 H 0.97000 * 119.99964 * 179.97438 * 23 22 16 39 39 H 1.09000 * 109.45992 * 301.72919 * 24 14 13 40 40 H 1.08996 * 109.46126 * 181.75759 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1029 1.6964 -1.2124 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 1.5047 -2.1063 -0.2899 9 6 3.4555 -1.2261 0.4062 10 1 4.0180 -0.5137 -0.1972 11 6 3.5809 -0.8539 1.8861 12 6 5.0508 -0.9473 2.3051 13 6 5.5644 -2.3632 2.0340 14 7 5.4235 -2.6711 0.6051 15 6 6.0330 -3.9685 0.2836 16 6 7.5239 -3.8875 0.4877 17 6 8.3616 -3.7081 -0.5967 18 6 9.7293 -3.6330 -0.4116 19 6 10.2654 -3.7376 0.8593 20 6 9.4337 -3.9171 1.9488 21 9 9.9571 -4.0188 3.1902 22 6 8.0565 -3.9871 1.7655 23 7 7.2110 -4.1634 2.8654 24 6 4.0154 -2.6340 0.1901 25 1 -0.4850 -0.8364 -0.0788 26 1 3.2232 0.1647 2.0370 27 1 2.9856 -1.5417 2.4865 28 1 5.6389 -0.2308 1.7315 29 1 5.1410 -0.7240 3.3681 30 1 6.6147 -2.4291 2.3179 31 1 4.9847 -3.0778 2.6184 32 1 5.6182 -4.7366 0.9365 33 1 5.8217 -4.2217 -0.7553 34 1 7.9468 -3.6264 -1.5906 35 1 10.3810 -3.4923 -1.2612 36 1 11.3345 -3.6781 1.0007 37 1 6.2511 -4.2158 2.7358 38 1 7.5845 -4.2333 3.7579 39 1 3.4431 -3.3473 0.7832 40 1 3.9407 -2.8965 -0.8651 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602705807.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:33 Heat of formation + Delta-G solvation = -27.997978 kcal Electronic energy + Delta-G solvation = -22101.261171 eV Core-core repulsion = 18829.375625 eV Total energy + Delta-G solvation = -3271.885547 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.73402 -41.09538 -39.27285 -36.17256 -35.23012 -34.11690 -31.86748 -31.65398 -29.64179 -27.19615 -26.51233 -24.16000 -23.39094 -22.94474 -21.70733 -20.54756 -19.63541 -18.53638 -18.20152 -17.51595 -17.10573 -16.45409 -16.24203 -15.87539 -15.72281 -15.32134 -15.27152 -15.11155 -14.45842 -14.36590 -14.15453 -14.06140 -13.58203 -13.42376 -12.93676 -12.75926 -12.59416 -12.43520 -12.27429 -12.00579 -11.83562 -11.70222 -11.51227 -11.38192 -10.86787 -10.71717 -10.33189 -9.65971 -9.20241 -8.73773 -8.46516 -6.34365 0.28322 0.54250 1.46748 1.53894 1.73578 2.49275 2.65657 2.82341 3.07721 3.19067 3.33293 3.75595 3.97173 4.05470 4.12386 4.17483 4.26838 4.39358 4.41444 4.53862 4.57280 4.68847 4.76561 4.81284 4.89440 4.96259 5.05392 5.09928 5.17391 5.20069 5.26616 5.46768 5.50797 5.66105 5.75304 5.90980 5.92630 6.05735 6.20668 6.30058 6.40781 6.61314 6.72594 7.42449 8.65719 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.029857 B = 0.004426 C = 0.004328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 937.568191 B = 6325.200955 C = 6468.180795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C -0.018 4.018 3 Si 1.084 2.916 4 H -0.292 1.292 5 H -0.266 1.266 6 H -0.244 1.244 7 C -0.601 4.601 8 H 0.016 0.984 9 C 0.025 3.975 10 H 0.026 0.974 11 C -0.121 4.121 12 C -0.115 4.115 13 C 0.043 3.957 14 N -0.537 5.537 15 C 0.100 3.900 16 C -0.139 4.139 17 C -0.067 4.067 18 C -0.149 4.149 19 C -0.108 4.108 20 C -0.007 4.007 21 F -0.152 7.152 22 C 0.187 3.813 23 N -0.872 5.872 24 C 0.087 3.913 25 H 0.251 0.749 26 H 0.047 0.953 27 H 0.034 0.966 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.109 0.891 31 H 0.027 0.973 32 H 0.037 0.963 33 H 0.091 0.909 34 H 0.141 0.859 35 H 0.155 0.845 36 H 0.152 0.848 37 H 0.405 0.595 38 H 0.404 0.596 39 H 0.010 0.990 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.882 -8.295 3.286 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.216 4.216 3 Si 0.906 3.094 4 H -0.218 1.218 5 H -0.191 1.191 6 H -0.169 1.169 7 C -0.639 4.639 8 H 0.035 0.965 9 C 0.006 3.994 10 H 0.044 0.956 11 C -0.159 4.159 12 C -0.153 4.153 13 C -0.085 4.085 14 N -0.261 5.261 15 C -0.027 4.027 16 C -0.144 4.144 17 C -0.086 4.086 18 C -0.168 4.168 19 C -0.127 4.127 20 C -0.031 4.031 21 F -0.131 7.131 22 C 0.081 3.919 23 N -0.417 5.417 24 C -0.041 4.041 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.080 0.920 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.045 0.955 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.169 0.831 37 H 0.240 0.760 38 H 0.234 0.766 39 H 0.029 0.971 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 21.937 -6.344 3.129 23.050 hybrid contribution -1.436 -2.610 0.828 3.092 sum 20.501 -8.954 3.957 22.718 Atomic orbital electron populations 1.70999 1.08284 1.29920 1.48650 1.27120 0.95983 1.06191 0.92282 0.83568 0.74781 0.71685 0.79378 1.21846 1.19136 1.16850 1.22219 0.97570 0.94570 1.49531 0.96547 1.18929 0.93448 0.93895 0.93142 0.95634 1.21967 0.95607 1.00321 0.97964 1.21652 0.95542 0.97196 1.00921 1.22824 1.02311 0.95914 0.87411 1.62067 1.15763 1.30205 1.18101 1.20882 0.90191 0.89455 1.02161 1.19191 0.95176 1.08686 0.91369 1.21160 0.93412 0.95387 0.98633 1.21060 0.94963 1.03876 0.96940 1.21218 1.00662 0.99360 0.91454 1.17324 0.90111 1.14963 0.80670 1.91407 1.86847 1.94813 1.40072 1.17684 0.88727 0.96601 0.88933 1.43207 1.09076 1.82375 1.07030 1.21846 0.86233 0.97196 0.98831 0.94012 0.93423 0.94671 0.91962 0.90599 0.87372 0.95483 0.94544 0.89042 0.84134 0.82706 0.83064 0.75970 0.76624 0.97149 0.92137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.68 13.69 21.45 0.29 -59.39 16 2 C -0.02 -1.06 5.34 84.65 0.45 -0.60 16 3 Si 1.08 50.86 26.41 68.60 1.81 52.67 16 4 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 5 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 6 H -0.24 -10.24 5.57 99.48 0.55 -9.69 16 7 C -0.60 -34.26 8.82 25.60 0.23 -34.04 16 8 H 0.02 1.02 7.99 -2.91 -0.02 0.99 16 9 C 0.03 1.18 1.84 -11.49 -0.02 1.16 16 10 H 0.03 1.22 6.79 -2.39 -0.02 1.20 16 11 C -0.12 -5.11 4.97 30.68 0.15 -4.96 16 12 C -0.12 -3.83 6.09 30.65 0.19 -3.64 16 13 C 0.04 1.28 3.81 86.33 0.33 1.61 16 14 N -0.54 -17.27 4.65 -900.91 -4.19 -21.45 16 15 C 0.10 2.61 4.96 85.56 0.42 3.03 16 16 C -0.14 -3.26 5.19 -19.74 -0.10 -3.37 16 17 C -0.07 -1.35 9.66 22.26 0.22 -1.13 16 18 C -0.15 -2.53 10.04 22.29 0.22 -2.30 16 19 C -0.11 -1.98 10.02 22.29 0.22 -1.76 16 20 C -0.01 -0.16 7.31 22.48 0.16 0.01 16 21 F -0.15 -3.52 16.64 44.97 0.75 -2.77 16 22 C 0.19 4.30 5.54 38.21 0.21 4.51 16 23 N -0.87 -17.71 7.12 -51.21 -0.36 -18.08 16 24 C 0.09 3.45 4.68 86.33 0.40 3.85 16 25 H 0.25 16.10 8.73 -92.71 -0.81 15.29 16 26 H 0.05 2.12 4.86 -2.38 -0.01 2.10 16 27 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 29 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 30 H 0.11 2.90 4.35 -2.39 -0.01 2.89 16 31 H 0.03 0.78 6.90 -2.39 -0.02 0.76 16 32 H 0.04 0.92 7.09 -2.38 -0.02 0.90 16 33 H 0.09 2.25 7.84 -2.39 -0.02 2.23 16 34 H 0.14 2.45 8.04 -2.91 -0.02 2.42 16 35 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 36 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 37 H 0.41 8.47 4.29 -92.70 -0.40 8.07 16 38 H 0.40 7.05 8.32 -92.71 -0.77 6.28 16 39 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 40 H 0.06 2.42 8.01 -2.39 -0.02 2.40 16 Total: -1.00 -66.12 308.48 1.10 -65.01 By element: Atomic # 1 Polarization: 21.93 SS G_CDS: -0.29 Total: 21.64 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 3.09 Total: -37.63 kcal Atomic # 7 Polarization: -94.66 SS G_CDS: -4.26 Total: -98.92 kcal Atomic # 9 Polarization: -3.52 SS G_CDS: 0.75 Total: -2.77 kcal Atomic # 14 Polarization: 50.86 SS G_CDS: 1.81 Total: 52.67 kcal Total: -66.12 1.10 -65.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602705807.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.016 kcal (2) G-P(sol) polarization free energy of solvation -66.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.102 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds