Wall clock time and date at job start Wed Apr 15 2020 11:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86793 * 120.00303 * 2 1 4 4 H 1.48502 * 109.47495 * 240.00496 * 3 2 1 5 5 H 1.48502 * 109.46925 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47310 * 120.00159 * 3 2 1 7 7 C 1.37881 * 119.99951 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99988 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99771 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.53933 * 60.10218 * 9 7 2 11 11 C 1.53113 * 109.50566 * 299.99990 * 9 7 2 12 12 C 1.53119 * 109.16276 * 182.40492 * 11 9 7 13 13 C 1.53037 * 109.27801 * 57.65669 * 12 11 9 14 14 N 1.46851 * 109.52068 * 300.81970 * 13 12 11 15 15 C 1.46908 * 110.99660 * 185.83931 * 14 13 12 16 16 C 1.50691 * 109.47104 * 66.04885 * 15 14 13 17 17 C 1.38204 * 120.02668 * 260.24872 * 16 15 14 18 18 C 1.38226 * 120.11063 * 180.25501 * 17 16 15 19 19 C 1.38321 * 120.16520 * 359.74903 * 18 17 16 20 20 C 1.38242 * 120.04918 * 359.97438 * 19 18 17 21 21 F 1.35103 * 120.05591 * 179.97438 * 20 19 18 22 22 C 1.38789 * 120.02788 * 79.99769 * 16 15 14 23 23 N 1.39845 * 120.08009 * 0.02562 * 22 16 15 24 24 C 1.46849 * 111.19663 * 61.74428 * 14 13 12 25 25 H 0.96999 * 119.99930 * 359.97438 * 1 2 3 26 26 H 1.09004 * 109.52299 * 62.50367 * 11 9 7 27 27 H 1.09006 * 109.57788 * 302.34294 * 11 9 7 28 28 H 1.08996 * 109.50648 * 297.71392 * 12 11 9 29 29 H 1.09002 * 109.50315 * 177.59293 * 12 11 9 30 30 H 1.09002 * 109.46262 * 180.80711 * 13 12 11 31 31 H 1.09000 * 109.46514 * 60.83853 * 13 12 11 32 32 H 1.09003 * 109.46958 * 306.04448 * 15 14 13 33 33 H 1.09003 * 109.46725 * 186.04904 * 15 14 13 34 34 H 1.07996 * 119.94040 * 359.97438 * 17 16 15 35 35 H 1.08003 * 119.91218 * 179.72254 * 18 17 16 36 36 H 1.08006 * 119.97721 * 179.97438 * 19 18 17 37 37 H 0.96999 * 120.00098 * 179.72486 * 23 22 16 38 38 H 0.97005 * 119.99793 * 359.72212 * 23 22 16 39 39 H 1.08996 * 109.46452 * 58.27237 * 24 14 13 40 40 H 1.09003 * 109.45992 * 178.23998 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6176 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0005 10 1 0.6249 -2.5586 -0.8908 11 6 0.3708 -2.5813 1.2497 12 6 -0.3449 -3.9347 1.2724 13 6 0.6951 -5.0569 1.2399 14 7 1.5110 -4.9348 0.0250 15 6 2.4284 -6.0742 -0.1098 16 6 1.6341 -7.3345 -0.3365 17 6 1.3915 -8.1978 0.7151 18 6 0.6676 -9.3570 0.5080 19 6 0.1786 -9.6554 -0.7511 20 6 0.4124 -8.7939 -1.8066 21 9 -0.0647 -9.0855 -3.0365 22 6 1.1411 -7.6268 -1.6006 23 7 1.3808 -6.7530 -2.6657 24 6 2.2447 -3.6629 0.0038 25 1 -0.4850 0.8400 0.0004 26 1 -0.3672 -1.7794 1.2290 27 1 0.9914 -2.4824 2.1404 28 1 -0.9961 -4.0168 0.4022 29 1 -0.9400 -4.0164 2.1820 30 1 0.1883 -6.0220 1.2415 31 1 1.3372 -4.9826 2.1176 32 1 3.0183 -6.1754 0.8012 33 1 3.0938 -5.9067 -0.9568 34 1 1.7721 -7.9685 1.6995 35 1 0.4838 -10.0315 1.3311 36 1 -0.3863 -10.5622 -0.9096 37 1 1.0391 -6.9603 -3.5495 38 1 1.8889 -5.9394 -2.5207 39 1 2.8796 -3.5951 0.8872 40 1 2.8635 -3.6155 -0.8924 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602705808.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:36 Heat of formation + Delta-G solvation = -45.244522 kcal Electronic energy + Delta-G solvation = -21883.920799 eV Core-core repulsion = 18611.287386 eV Total energy + Delta-G solvation = -3272.633413 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.69543 -40.69402 -39.21173 -35.80006 -35.32472 -33.72245 -31.86918 -31.23462 -29.49180 -27.10935 -26.88179 -23.85596 -23.30175 -23.08729 -21.85235 -20.31882 -18.57706 -18.40864 -18.02283 -17.48937 -16.78741 -16.54830 -16.24550 -15.90695 -15.63732 -15.38057 -15.00176 -14.89672 -14.50640 -14.28017 -13.97310 -13.68541 -13.45238 -13.24798 -12.84506 -12.79277 -12.60813 -12.52328 -12.43069 -11.91862 -11.82207 -11.68059 -11.56075 -11.35772 -10.84630 -10.64905 -10.35965 -9.61182 -9.07693 -8.38421 -8.06280 -6.20660 0.30514 0.62675 1.42633 1.43362 1.50963 2.43515 2.71698 2.98706 3.20780 3.29840 3.37047 3.86761 4.06210 4.22051 4.26750 4.28131 4.39638 4.45892 4.57394 4.65419 4.67307 4.78988 4.92632 4.95070 5.01042 5.12533 5.18081 5.20530 5.21600 5.40250 5.49580 5.54471 5.64633 5.65869 5.98328 5.99466 6.14425 6.23802 6.36061 6.48039 6.54995 6.88265 6.92853 7.47472 8.97811 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.030183 B = 0.004106 C = 0.003946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.450772 B = 6817.094100 C = 7093.784916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.055 3.945 10 H -0.006 1.006 11 C -0.103 4.103 12 C -0.110 4.110 13 C 0.070 3.930 14 N -0.539 5.539 15 C 0.101 3.899 16 C -0.142 4.142 17 C -0.074 4.074 18 C -0.153 4.153 19 C -0.106 4.106 20 C -0.018 4.018 21 F -0.156 7.156 22 C 0.203 3.797 23 N -0.863 5.863 24 C 0.081 3.919 25 H 0.259 0.741 26 H 0.054 0.946 27 H 0.023 0.977 28 H 0.043 0.957 29 H 0.066 0.934 30 H 0.082 0.918 31 H 0.030 0.970 32 H 0.052 0.948 33 H 0.078 0.922 34 H 0.141 0.859 35 H 0.156 0.844 36 H 0.150 0.850 37 H 0.401 0.599 38 H 0.407 0.593 39 H 0.018 0.982 40 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.646 -18.403 0.965 18.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.196 1.196 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.012 0.988 11 C -0.141 4.141 12 C -0.148 4.148 13 C -0.057 4.057 14 N -0.263 5.263 15 C -0.026 4.026 16 C -0.148 4.148 17 C -0.093 4.093 18 C -0.173 4.173 19 C -0.126 4.126 20 C -0.042 4.042 21 F -0.135 7.135 22 C 0.094 3.906 23 N -0.402 5.402 24 C -0.046 4.046 25 H 0.068 0.932 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.100 0.900 31 H 0.048 0.952 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.159 0.841 35 H 0.173 0.827 36 H 0.167 0.833 37 H 0.230 0.770 38 H 0.238 0.762 39 H 0.036 0.964 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.179 -18.287 0.520 18.424 hybrid contribution 0.650 1.564 -0.112 1.697 sum 2.829 -16.723 0.408 16.966 Atomic orbital electron populations 1.70036 1.07229 1.27030 1.51267 1.25706 0.95583 1.02285 0.94855 0.85703 0.78408 0.79257 0.78813 1.19642 1.21189 1.19663 1.21512 0.93033 0.92143 1.50704 0.92864 1.18551 0.92940 0.91365 0.93524 0.98756 1.21456 0.99095 0.96030 0.97559 1.21569 0.97623 0.95173 1.00415 1.21976 0.95054 0.98706 0.90010 1.61983 1.24149 1.01379 1.38819 1.20833 0.92920 0.87448 1.01363 1.19204 1.05524 0.98342 0.91724 1.21172 0.96542 0.93335 0.98250 1.21003 1.01042 0.98497 0.96789 1.21188 1.00149 0.99283 0.91939 1.17421 1.07159 0.97985 0.81633 1.91389 1.87328 1.93519 1.41246 1.17746 0.94052 0.89139 0.89615 1.42477 1.62783 1.25579 1.09327 1.22000 0.95251 0.88605 0.98785 0.93182 0.92703 0.95787 0.93845 0.91572 0.89962 0.95206 0.93009 0.90347 0.84096 0.82681 0.83261 0.77019 0.76235 0.96387 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.39 11.35 21.45 0.24 -53.15 16 2 C 0.01 0.80 5.30 84.66 0.45 1.25 16 3 Si 0.95 43.49 29.54 68.60 2.03 45.51 16 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.54 -29.31 8.56 25.60 0.22 -29.09 16 8 H 0.05 2.83 7.74 -2.91 -0.02 2.81 16 9 C 0.06 2.76 2.26 -11.49 -0.03 2.73 16 10 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 11 C -0.10 -4.94 5.02 30.67 0.15 -4.78 16 12 C -0.11 -4.27 6.09 30.65 0.19 -4.08 16 13 C 0.07 2.30 5.26 86.32 0.45 2.76 16 14 N -0.54 -18.17 4.65 -900.89 -4.19 -22.36 16 15 C 0.10 2.71 4.39 85.55 0.38 3.09 16 16 C -0.14 -3.55 4.61 -19.74 -0.09 -3.64 16 17 C -0.07 -1.51 8.55 22.26 0.19 -1.32 16 18 C -0.15 -2.76 10.04 22.29 0.22 -2.53 16 19 C -0.11 -2.17 10.02 22.29 0.22 -1.95 16 20 C -0.02 -0.46 7.31 22.48 0.16 -0.30 16 21 F -0.16 -4.18 16.64 44.97 0.75 -3.43 16 22 C 0.20 5.37 6.74 38.21 0.26 5.62 16 23 N -0.86 -21.82 9.00 -51.21 -0.46 -22.28 16 24 C 0.08 3.26 4.68 86.33 0.40 3.66 16 25 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 26 H 0.05 3.00 6.15 -2.39 -0.01 2.99 16 27 H 0.02 1.13 8.14 -2.38 -0.02 1.11 16 28 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.08 2.40 6.30 -2.39 -0.02 2.39 16 31 H 0.03 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.05 1.28 7.99 -2.39 -0.02 1.26 16 33 H 0.08 2.01 6.94 -2.39 -0.02 2.00 16 34 H 0.14 2.36 8.04 -2.91 -0.02 2.33 16 35 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.15 2.34 8.06 -2.91 -0.02 2.32 16 37 H 0.40 9.18 8.32 -92.71 -0.77 8.41 16 38 H 0.41 10.53 7.06 -92.70 -0.65 9.88 16 39 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 2.38 8.01 -2.39 -0.02 2.36 16 Total: -1.00 -61.65 321.17 1.19 -60.47 By element: Atomic # 1 Polarization: 24.19 SS G_CDS: -0.37 Total: 23.82 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.18 Total: -28.59 kcal Atomic # 7 Polarization: -93.38 SS G_CDS: -4.40 Total: -97.79 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 0.75 Total: -3.43 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.51 kcal Total: -61.65 1.19 -60.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602705808.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.224 kcal (2) G-P(sol) polarization free energy of solvation -61.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds