Wall clock time and date at job start Wed Apr 15 2020 11:43:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 7 12 12 C 1.46956 * 110.99700 * 293.79427 * 11 10 9 13 13 C 1.53049 * 109.36630 * 176.81026 * 12 11 10 14 14 N 1.46963 * 109.36171 * 58.40184 * 13 12 11 15 15 C 1.39666 * 111.00050 * 176.81145 * 14 13 12 16 16 C 1.38952 * 120.06214 * 303.80529 * 15 14 13 17 17 C 1.38094 * 119.97623 * 180.02562 * 16 15 14 18 18 C 1.38269 * 120.09904 * 0.02562 * 17 16 15 19 19 C 1.38501 * 120.12349 * 359.97438 * 18 17 16 20 20 F 1.35097 * 119.98705 * 179.97438 * 19 18 17 21 21 C 1.38348 * 120.02082 * 359.67925 * 19 18 17 22 22 C 1.46948 * 110.88098 * 300.68193 * 14 13 12 23 23 C 1.46961 * 111.00124 * 170.00033 * 11 10 9 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.09004 * 109.47066 * 299.99797 * 10 9 7 28 28 H 1.09000 * 109.47234 * 59.99288 * 10 9 7 29 29 H 1.08999 * 109.49195 * 296.77993 * 12 11 10 30 30 H 1.09002 * 109.48564 * 56.84551 * 12 11 10 31 31 H 1.09000 * 109.49067 * 298.43979 * 13 12 11 32 32 H 1.09001 * 109.51136 * 178.38097 * 13 12 11 33 33 H 1.08004 * 120.01140 * 0.02562 * 16 15 14 34 34 H 1.08004 * 119.94688 * 179.97438 * 17 16 15 35 35 H 1.07997 * 119.93761 * 179.97438 * 18 17 16 36 36 H 1.07996 * 120.04722 * 180.32280 * 21 19 18 37 37 H 1.08999 * 109.48998 * 299.35229 * 22 14 13 38 38 H 1.09000 * 109.50650 * 179.29566 * 22 14 13 39 39 H 1.09001 * 109.48531 * 303.15255 * 23 11 10 40 40 H 1.08997 * 109.48515 * 63.19455 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 7 1.5105 -4.9343 -0.0168 12 6 0.7673 -5.1195 1.2374 13 6 -0.0453 -6.4140 1.1593 14 7 0.8616 -7.5446 0.9160 15 6 0.1632 -8.7541 0.9101 16 6 -0.6056 -9.1194 2.0084 17 6 -1.2950 -10.3160 2.0008 18 6 -1.2211 -11.1519 0.9019 19 6 -0.4560 -10.7918 -0.1951 20 9 -0.3854 -11.6109 -1.2671 21 6 0.2309 -9.5909 -0.1958 22 6 1.6048 -7.3594 -0.3380 23 6 2.4174 -6.0649 -0.2600 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 2.8718 -3.6005 -0.9002 28 1 2.8717 -3.6084 0.8798 29 1 1.4682 -5.1797 2.0700 30 1 0.0938 -4.2759 1.3889 31 1 -0.7649 -6.3431 0.3437 32 1 -0.5751 -6.5686 2.0993 33 1 -0.6640 -8.4678 2.8677 34 1 -1.8920 -10.5996 2.8549 35 1 -1.7609 -12.0872 0.8989 36 1 0.8234 -9.3074 -1.0531 37 1 0.9039 -7.2992 -1.1706 38 1 2.2783 -8.2029 -0.4899 39 1 2.9469 -5.9105 -1.2002 40 1 3.1372 -6.1355 0.5554 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603016311.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:40 Heat of formation + Delta-G solvation = -7.226412 kcal Electronic energy + Delta-G solvation = -21111.946770 eV Core-core repulsion = 17840.961946 eV Total energy + Delta-G solvation = -3270.984824 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.05525 -40.42141 -38.16582 -35.55433 -33.06020 -31.56848 -30.80823 -30.20222 -28.95179 -26.23033 -24.31863 -23.71063 -22.30585 -21.81519 -20.39236 -19.62049 -18.13860 -16.65716 -16.45166 -16.26188 -15.78973 -15.65017 -14.90145 -14.80625 -14.64528 -14.45033 -14.17550 -13.99559 -13.76211 -13.09371 -12.78691 -12.45824 -12.24999 -12.05983 -11.84341 -11.50438 -11.26738 -11.16650 -11.00249 -10.94402 -10.66299 -10.52329 -9.95331 -9.81797 -9.39452 -9.14141 -9.02690 -8.36347 -8.04999 -7.82133 -6.02618 -4.04965 1.00068 1.04436 3.29360 3.29796 3.37038 3.40841 3.65173 4.11268 4.28450 4.48886 4.54782 4.80043 4.85134 4.92917 5.10481 5.12251 5.26232 5.33726 5.34707 5.39595 5.49117 5.61318 5.71808 5.80459 5.89325 5.97280 6.03118 6.07089 6.15263 6.17412 6.32932 6.43397 6.54235 6.83494 6.91515 7.07047 7.41383 7.47853 7.74102 7.84676 8.03668 8.39957 9.02286 9.58965 11.08749 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.041480 B = 0.003018 C = 0.002933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.856151 B = 9276.003125 C = 9544.317602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.522 4.522 8 H 0.054 0.946 9 C 0.028 3.972 10 C 0.064 3.936 11 N -0.540 5.540 12 C 0.054 3.946 13 C 0.062 3.938 14 N -0.489 5.489 15 C 0.150 3.850 16 C -0.154 4.154 17 C -0.066 4.066 18 C -0.189 4.189 19 C 0.124 3.876 20 F -0.142 7.142 21 C -0.211 4.211 22 C 0.052 3.948 23 C 0.054 3.946 24 H 0.260 0.740 25 H 0.017 0.983 26 H 0.024 0.976 27 H 0.062 0.938 28 H 0.022 0.978 29 H 0.038 0.962 30 H 0.097 0.903 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.140 0.860 37 H 0.057 0.943 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.388 -20.940 2.905 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.266 5.266 12 C -0.074 4.074 13 C -0.063 4.063 14 N -0.204 5.204 15 C 0.051 3.949 16 C -0.174 4.174 17 C -0.085 4.085 18 C -0.209 4.209 19 C 0.104 3.896 20 F -0.120 7.120 21 C -0.233 4.233 22 C -0.075 4.075 23 C -0.075 4.075 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.040 0.960 29 H 0.056 0.944 30 H 0.115 0.885 31 H 0.074 0.926 32 H 0.103 0.897 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.157 0.843 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.482 -20.733 2.856 20.981 hybrid contribution 0.639 0.743 -0.120 0.987 sum -0.843 -19.990 2.737 20.194 Atomic orbital electron populations 1.69980 1.06019 1.26500 1.50700 1.24995 0.94840 0.99212 0.95280 0.86540 0.80087 0.83789 0.77594 1.19774 1.20977 1.21026 1.21223 0.93027 0.91020 1.50808 0.92736 1.19098 0.93963 0.90127 0.97752 1.22336 0.96762 0.88040 0.99147 1.62294 1.27716 1.02664 1.33878 1.22218 0.97726 0.96380 0.91070 1.22408 0.93622 0.88420 1.01823 1.59243 1.25459 1.01079 1.34581 1.18814 0.91773 0.91793 0.92517 1.20900 0.99973 0.98267 0.98273 1.20843 0.97370 0.92944 0.97294 1.21019 1.03443 1.02373 0.94024 1.17519 0.98642 0.89053 0.84397 1.91492 1.94989 1.71485 1.54054 1.21286 1.06115 0.96037 0.99833 1.22411 0.97271 0.98360 0.89409 1.22151 0.94188 0.89861 1.01265 0.93034 0.96506 0.95729 0.91966 0.95994 0.94369 0.88493 0.92592 0.89746 0.84999 0.84910 0.85091 0.84260 0.92464 0.89990 0.90071 0.94417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.89 21.46 29.54 -169.99 -5.02 16.44 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.52 -14.59 9.11 -34.44 -0.31 -14.90 16 8 H 0.05 1.48 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.71 4.91 -27.88 -0.14 0.57 16 10 C 0.06 1.31 4.90 -3.83 -0.02 1.29 16 11 N -0.54 -9.48 4.71 -234.47 -1.10 -10.59 16 12 C 0.05 0.88 5.41 -3.77 -0.02 0.86 16 13 C 0.06 0.83 5.38 -3.76 -0.02 0.81 16 14 N -0.49 -6.28 4.75 -170.97 -0.81 -7.09 16 15 C 0.15 1.78 5.64 -83.80 -0.47 1.31 16 16 C -0.15 -1.57 9.19 -39.37 -0.36 -1.93 16 17 C -0.07 -0.58 10.04 -39.62 -0.40 -0.98 16 18 C -0.19 -1.80 10.02 -39.47 -0.40 -2.20 16 19 C 0.12 1.39 7.30 -39.44 -0.29 1.11 16 20 F -0.14 -1.67 17.27 2.25 0.04 -1.64 16 21 C -0.21 -2.44 8.79 -39.32 -0.35 -2.78 16 22 C 0.05 0.66 4.29 -3.77 -0.02 0.64 16 23 C 0.05 0.78 5.61 -3.77 -0.02 0.76 16 24 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 25 H 0.02 0.44 6.49 -51.93 -0.34 0.11 16 26 H 0.02 0.68 8.14 -51.93 -0.42 0.25 16 27 H 0.06 1.26 8.03 -51.93 -0.42 0.85 16 28 H 0.02 0.45 8.12 -51.93 -0.42 0.03 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 1.73 6.34 -51.93 -0.33 1.40 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.96 6.82 -51.93 -0.35 0.61 16 33 H 0.13 1.20 7.18 -52.48 -0.38 0.82 16 34 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 35 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.14 1.51 5.81 -52.49 -0.30 1.21 16 37 H 0.06 0.74 7.57 -51.93 -0.39 0.35 16 38 H 0.08 0.89 7.18 -51.93 -0.37 0.51 16 39 H 0.08 1.09 8.07 -51.93 -0.42 0.67 16 40 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 323.26 15.07 4.87 4.87 Total: -1.00 -29.99 323.26 -10.00 -39.99 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: -5.80 Total: -2.28 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -2.91 Total: -13.90 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: -1.18 Total: -43.48 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.04 Total: -1.64 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.99 -10.00 -39.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603016311.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.759 kcal (2) G-P(sol) polarization free energy of solvation -29.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds