Wall clock time and date at job start Wed Apr 15 2020 11:43:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99849 * 2 1 4 4 H 1.48494 * 109.47005 * 240.00473 * 3 2 1 5 5 H 1.48498 * 109.46885 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47135 * 119.99957 * 3 2 1 7 7 C 1.37879 * 120.00270 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99973 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99783 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47169 * 179.97438 * 9 7 2 11 11 C 1.39993 * 120.00424 * 180.02562 * 10 9 7 12 12 C 1.38849 * 119.99515 * 179.97438 * 11 10 9 13 13 C 1.38144 * 120.03793 * 179.97438 * 12 11 10 14 14 C 1.38778 * 120.02009 * 0.03125 * 13 12 11 15 15 N 1.40175 * 120.00644 * 179.97438 * 14 13 12 16 16 C 1.46850 * 110.99947 * 64.20692 * 15 14 13 17 17 C 1.53038 * 109.52265 * 174.15927 * 16 15 14 18 18 C 1.53124 * 109.27498 * 59.17825 * 17 16 15 19 19 C 1.53116 * 109.16261 * 302.34691 * 18 17 16 20 20 C 1.46846 * 111.00014 * 299.99349 * 15 14 13 21 21 C 1.39044 * 119.98804 * 0.24574 * 14 13 12 22 22 F 1.35102 * 120.01606 * 179.70590 * 21 14 13 23 23 C 1.38258 * 119.95863 * 359.42915 * 21 14 13 24 24 H 0.97001 * 120.00264 * 359.97438 * 1 2 3 25 25 H 1.09005 * 109.47157 * 60.00128 * 9 7 2 26 26 H 1.08999 * 109.47255 * 299.99903 * 9 7 2 27 27 H 0.97002 * 120.00055 * 359.97438 * 10 9 7 28 28 H 1.08000 * 119.98354 * 0.02562 * 12 11 10 29 29 H 1.07996 * 119.99275 * 180.02562 * 13 12 11 30 30 H 1.08997 * 109.46121 * 294.17767 * 16 15 14 31 31 H 1.08998 * 109.45908 * 54.14335 * 16 15 14 32 32 H 1.08997 * 109.50584 * 299.24135 * 17 16 15 33 33 H 1.08993 * 109.53535 * 179.13880 * 17 16 15 34 34 H 1.08998 * 109.51864 * 182.43673 * 18 17 16 35 35 H 1.09004 * 109.57244 * 62.28490 * 18 17 16 36 36 H 1.09004 * 109.50037 * 297.71201 * 19 18 17 37 37 H 1.08995 * 109.53474 * 177.61934 * 19 18 17 38 38 H 1.09000 * 109.46467 * 305.85963 * 20 15 14 39 39 H 1.09005 * 109.45639 * 65.83473 * 20 15 14 40 40 H 1.08000 * 120.00874 * 180.27655 * 23 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7366 -4.9325 -0.0025 12 6 2.6390 -5.9877 -0.0042 13 6 2.1796 -7.2905 -0.0045 14 6 0.8155 -7.5457 -0.0037 15 7 0.3497 -8.8678 -0.0044 16 6 0.7383 -9.5634 1.2291 17 6 0.0925 -10.9505 1.2591 18 6 0.5508 -11.7482 0.0350 19 6 0.1770 -10.9788 -1.2349 20 6 0.8202 -9.5909 -1.1927 21 6 -0.0891 -6.4897 -0.0078 22 9 -1.4172 -6.7375 -0.0130 23 6 0.3714 -5.1861 -0.0007 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6248 -2.5571 0.8897 27 1 3.1568 -3.4354 -0.0028 28 1 3.7008 -5.7899 -0.0046 29 1 2.8822 -8.1107 -0.0054 30 1 1.8229 -9.6670 1.2613 31 1 0.4028 -8.9878 2.0917 32 1 -0.9924 -10.8474 1.2409 33 1 0.3931 -11.4729 2.1673 34 1 0.0595 -12.7211 0.0295 35 1 1.6315 -11.8860 0.0726 36 1 -0.9067 -10.8760 -1.2924 37 1 0.5380 -11.5208 -2.1090 38 1 0.5443 -9.0352 -2.0890 39 1 1.9045 -9.6944 -1.1490 40 1 -0.3305 -4.3653 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000905446027.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 15 2020 11:43:43 Heat of formation + Delta-G solvation = -27.923587 kcal Electronic energy + Delta-G solvation = -21220.124946 eV Core-core repulsion = 17948.242626 eV Total energy + Delta-G solvation = -3271.882321 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 278.149 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.28255 -39.79793 -38.07408 -35.18527 -33.27422 -32.11201 -30.89492 -30.14245 -28.39823 -26.29607 -24.01495 -23.13177 -23.07547 -21.70771 -20.93244 -19.52609 -17.75831 -16.94769 -16.30075 -15.86432 -15.29953 -14.90827 -14.75171 -14.65584 -14.55015 -14.13280 -13.72357 -13.56732 -13.47643 -13.26049 -13.19103 -12.48054 -12.32952 -12.16233 -11.72290 -11.57487 -11.29907 -11.15679 -10.95050 -10.91742 -10.84638 -10.54936 -10.41970 -10.19520 -9.48580 -9.37769 -8.58582 -8.37997 -8.34579 -6.72290 -6.25717 -4.32074 1.66586 1.81970 3.20914 3.26031 3.27404 3.88504 4.08298 4.15712 4.37732 4.70959 4.79214 4.79848 4.87034 5.11359 5.15084 5.16787 5.32249 5.44733 5.46853 5.54062 5.62486 5.75362 5.77947 5.83344 5.86322 5.96435 6.01305 6.12659 6.22550 6.30771 6.41545 6.67214 6.70285 6.98252 7.08761 7.14965 7.33705 7.51997 7.68085 7.86979 8.12837 8.52889 8.80238 9.34520 10.84697 Molecular weight = 278.15amu Principal moments of inertia in cm(-1) A = 0.044351 B = 0.003253 C = 0.003145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 631.180013 B = 8606.281988 C = 8901.165055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.065 3.935 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.248 3.752 10 N -0.721 5.721 11 C 0.260 3.740 12 C -0.217 4.217 13 C -0.069 4.069 14 C -0.041 4.041 15 N -0.487 5.487 16 C 0.062 3.938 17 C -0.117 4.117 18 C -0.120 4.120 19 C -0.117 4.117 20 C 0.061 3.939 21 C 0.176 3.824 22 F -0.134 7.134 23 C -0.239 4.239 24 H 0.267 0.733 25 H 0.023 0.977 26 H 0.024 0.976 27 H 0.395 0.605 28 H 0.119 0.881 29 H 0.117 0.883 30 H 0.033 0.967 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.057 0.943 36 H 0.071 0.929 37 H 0.064 0.936 38 H 0.074 0.926 39 H 0.033 0.967 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 -19.859 0.050 20.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.127 3.873 10 N -0.342 5.342 11 C 0.148 3.852 12 C -0.241 4.241 13 C -0.090 4.090 14 C -0.138 4.138 15 N -0.208 5.208 16 C -0.065 4.065 17 C -0.155 4.155 18 C -0.158 4.158 19 C -0.155 4.155 20 C -0.066 4.066 21 C 0.155 3.845 22 F -0.112 7.112 23 C -0.263 4.263 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.041 0.959 27 H 0.229 0.771 28 H 0.137 0.863 29 H 0.135 0.865 30 H 0.051 0.949 31 H 0.093 0.907 32 H 0.090 0.910 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.076 0.924 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.093 0.907 39 H 0.051 0.949 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 1.796 -19.508 0.033 19.591 hybrid contribution 1.443 1.022 0.024 1.769 sum 3.239 -18.486 0.058 18.767 Atomic orbital electron populations 1.69932 1.06090 1.27610 1.48831 1.24932 0.94947 0.99490 0.94536 0.86454 0.79441 0.82180 0.78760 1.20030 1.20984 1.20035 1.21128 0.93319 0.90335 1.53338 0.91962 1.19192 0.88671 0.82573 0.96908 1.45683 1.09871 1.02283 1.76379 1.17773 0.91716 0.85945 0.89747 1.20440 0.98757 0.91446 1.13412 1.20974 0.94395 0.96279 0.97351 1.18194 0.91029 0.88988 1.15579 1.59387 1.59841 0.99390 1.02186 1.22123 0.97470 0.94555 0.92382 1.21603 1.01563 0.94706 0.97647 1.21574 1.00684 0.98441 0.95109 1.21602 1.01740 0.94784 0.97399 1.22124 0.96937 0.94315 0.93192 1.17192 0.76775 0.91984 0.98518 1.91451 1.31301 1.95115 1.93381 1.20586 0.95471 0.95494 1.14786 0.92280 0.95869 0.95859 0.77148 0.86254 0.86507 0.94866 0.90747 0.91030 0.91692 0.92015 0.92427 0.91036 0.91694 0.90730 0.94857 0.84262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.27 13.29 55.43 0.74 -24.53 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.58 29.54 -169.99 -5.02 15.56 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -14.40 9.28 -34.44 -0.32 -14.72 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.14 4.67 -5.20 -0.02 6.11 16 10 N -0.72 -14.68 5.74 -59.75 -0.34 -15.02 16 11 C 0.26 4.83 6.66 -83.68 -0.56 4.27 16 12 C -0.22 -3.38 9.89 -39.39 -0.39 -3.77 16 13 C -0.07 -1.00 8.70 -39.42 -0.34 -1.34 16 14 C -0.04 -0.64 4.70 -83.54 -0.39 -1.03 16 15 N -0.49 -6.69 4.46 -170.99 -0.76 -7.45 16 16 C 0.06 0.72 5.17 -3.83 -0.02 0.70 16 17 C -0.12 -1.12 6.09 -26.65 -0.16 -1.29 16 18 C -0.12 -1.04 6.00 -26.61 -0.16 -1.20 16 19 C -0.12 -1.12 6.09 -26.66 -0.16 -1.28 16 20 C 0.06 0.72 5.12 -3.84 -0.02 0.70 16 21 C 0.18 3.16 7.31 -39.27 -0.29 2.87 16 22 F -0.13 -2.48 17.07 2.25 0.04 -2.44 16 23 C -0.24 -4.58 9.29 -39.35 -0.37 -4.95 16 24 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.02 0.62 7.95 -51.93 -0.41 0.21 16 26 H 0.02 0.63 7.95 -51.93 -0.41 0.21 16 27 H 0.39 7.35 8.34 -40.82 -0.34 7.01 16 28 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.12 1.42 7.13 -52.49 -0.37 1.05 16 30 H 0.03 0.37 7.56 -51.93 -0.39 -0.02 16 31 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.93 8.11 -51.93 -0.42 0.51 16 39 H 0.03 0.37 7.34 -51.93 -0.38 -0.01 16 40 H 0.14 2.88 6.73 -52.49 -0.35 2.53 16 LS Contribution 327.85 15.07 4.94 4.94 Total: -1.00 -27.90 327.85 -9.71 -37.61 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.00 Total: 4.61 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.30 Total: -13.26 kcal Atomic # 7 Polarization: -46.64 SS G_CDS: -0.37 Total: -47.01 kcal Atomic # 9 Polarization: -2.48 SS G_CDS: 0.04 Total: -2.44 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -27.90 -9.71 -37.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905446027.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.686 kcal (2) G-P(sol) polarization free energy of solvation -27.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds